2QKNA

Crystal structure of maize cytokinin oxidase/dehydrogenase complexed with phenylurea inhibitor cppu
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
502
structure length
496
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Phenyl- and benzylurea cytokinins as competitive inhibitors of cytokinin oxidase/dehydrogenase: a structural study.
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
total genus 171
structure length 496
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2007-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2qknA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2qknA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 2qknA03
3C0PA 2O3GA 2GQTA 1E8HA 2P4PA 3W8WA 3S1DA 3BW7A 2Q85A 2OAIA 3NVWB 3B9JB 4BBYA 2I0KA 5HHZA 2AXRA 5HMRA 2NQWA 3DQ0A 1W1LA 1N63C 3AN1A 2BVFA 5FXFA 1W1RA 1VDVA 4DNSA 3D2DA 4EC3A 1MBBA 3NVVB 1SB3B 4BC7A 2VFRA 4ML8A 1WVFA 1RM6B 4JB1A 4HG0A 2VFVA 1WVEA 4PVEA 5HQXA 1W1JA 3D2JA 2W3SA 1N5WC 3NS1B 1HSKA 3FW9A 4O95A 3NVZB 3FW7A 1QLTA 1W1MA 3W8XA 3GSYA 5D79A 2MBRA 2QPMA 5FXEA 5ADZA 3JS8A 3AMZA 2QKNA 3NVYB 2EXRA 1ZXIC 5AE2A 1AHZA 3W8ZA 1DZNA 1W1OA 1E8FA 3PM9A 1WYGA 1DIQA 3TX1A 3KJMA 2R8DA 1JROA 1FO4A 1N62C 5FXPA 2Q4WA 4BC9A 1FFUC 4PVHA 2VFSA 2VAOA 2W54A 4PYTA 1N60C 3I99A 1W1SA 1N61C 3ETRB 4ZOHB 5AE1A 3S1CA 3VTEA 5G5HB 2R2ZA 3HRDC 2W3RA 1E0YA 1F0XA 1FIQB 5G5GB 4PWBA 4BCAA 1W1QA 4PVKA 2PLIA 3S1FA 3AM9A 3NRZB 3TSHA 2P3HA 2VFUA 3FWAA 3EUB3 1VAOA 1FFVC 4JAYA 2BVHA 1QLUA 3S1EA 1UXYA 3DEDA 1V97A 2P13A 3D2HA 2YVSA 1JRPA 2W55A 3FW8A 2BVGA 5FXDA 1E8GA 1DIIA 4OALA 2RK5A 1W1KA 1MBTA 2GQUA 4UD8A 3SR6B 3TSJA 1ZR6A 4MLAA 5AE3A 1AHUA 4XLOA 2PLSA 4PWCA 1I19A 1T3QC 4PZFA 1AHVA 4PVJA 2VFTA 1N5XA 2E3TA 3LLBA 3LAEA
chains in the Genus database with same CATH superfamily
3C0PA 2O3GA 2GQTA 1E8HA 3RJ8A 2P4PA 3W8WA 3S1DA 3BW7A 2Q85A 3NVWB 2OAIA 5L6FA 2UUUA 3B9JB 4BBYA 2I0KA 5HHZA 2AXRA 5HMRA 2NQWA 2Y3RA 3DQ0A 5I1WA 1W1LA 1N63C 3AN1A 2BVFA 5FXFA 3EJDB 1W1RA 1VDVA 4DNSA 3D2DA 4EC3A 1MBBA 3NVVB 1SB3B 4BC7A 2VFRA 4ML8A 1WVFA 1RM6B 4JB1A 4HG0A 2VFVA 1WVEA 4PVEA 5HQXA 2IPIA 1W1JA 3D2JA 2W3SA 2Y3SA 1N5WC 3NS1B 1HSKA 3FW9A 4O95A 3NVZB 3FW7A 1QLTA 1W1MA 3W8XA 3GSYA 5D79A 2MBRA 2QPMA 5FXEA 5ADZA 3JS8A 3AMZA 2QKNA 2UUVA 3NVYB 2EXRA 1ZXIC 5AE2A 1AHZA 3W8ZA 1DZNA 1W1OA 3EJBB 1E8FA 3PM9A 1WYGA 1DIQA 3TX1A 3KJMA 3EJEB 2R8DA 1JROA 1FO4A 1N62C 5FXPA 2Q4WA 4BC9A 1FFUC 3HSUA 4PVHA 2VFSA 2VAOA 2W54A 2Y08A 2WDWA 4PYTA 1N60C 5I1VA 3I99A 1W1SA 1N61C 3ETRB 4ZOHB 5AE1A 3S1CA 3VTEA 5AWVA 5G5HB 2R2ZA 3HRDC 2W3RA 3PQBA 1E0YA 1F0XA 1FIQB 5G5GB 4PWBA 4BCAA 1W1QA 3RJAA 4PVKA 2PLIA 3S1FA 3AM9A 3NRZB 3TSHA 2P3HA 2VFUA 3FWAA 3EUB3 1VAOA 1FFVC 4JAYA 2BVHA 3POPA 1QLUA 3S1EA 1UXYA 5K8EA 3DEDA 1V97A 2P13A 3D2HA 2YVSA 1JRPA 2W55A 3FW8A 2BVGA 5FXDA 2Y4GA 1E8GA 1DIIA 4OALA 2RK5A 1W1KA 1MBTA 2GQUA 4UD8A 3SR6B 3TSJA 1ZR6A 4MLAA 5AE3A 1AHUA 4XLOA 2PLSA 4PWCA 1I19A 1T3QC 4PZFA 1AHVA 4PVJA 2VFTA 1N5XA 5L6GA 2E3TA 3LLBA 3LAEA
chains in the Genus database with same CATH topology
3C0PA 2O3GA 2GQTA 1E8HA 3RJ8A 2P4PA 3W8WA 3S1DA 3BW7A 2Q85A 2OAIA 3NVWB 5L6FA 2UUUA 3B9JB 4BBYA 2I0KA 5HHZA 2AXRA 5HMRA 2NQWA 2Y3RA 3DQ0A 5I1WA 1W1LA 1N63C 3AN1A 2BVFA 5FXFA 1W1RA 1VDVA 4DNSA 3D2DA 4EC3A 1MBBA 3NVVB 1SB3B 4BC7A 2VFRA 4ML8A 1WVFA 1RM6B 4JB1A 4HG0A 2VFVA 1WVEA 4PVEA 5HQXA 2IPIA 1W1JA 3D2JA 2W3SA 2Y3SA 1N5WC 3NS1B 1HSKA 3FW9A 4O95A 3NVZB 3FW7A 1QLTA 1W1MA 3W8XA 3GSYA 5D79A 2MBRA 2QPMA 5FXEA 5ADZA 3JS8A 3AMZA 2QKNA 2UUVA 3NVYB 2EXRA 1ZXIC 5AE2A 1AHZA 3W8ZA 1DZNA 1W1OA 1E8FA 3PM9A 1WYGA 1DIQA 3TX1A 3KJMA 2R8DA 1JROA 1FO4A 1N62C 5FXPA 2Q4WA 4BC9A 1FFUC 3HSUA 4PVHA 2VFSA 2VAOA 2W54A 2Y08A 2WDWA 4PYTA 1N60C 5I1VA 3I99A 1W1SA 1N61C 3ETRB 4ZOHB 5AE1A 3S1CA 3VTEA 5AWVA 5G5HB 2R2ZA 3HRDC 2W3RA 3PQBA 1E0YA 1F0XA 1FIQB 5G5GB 4PWBA 4BCAA 1W1QA 3RJAA 4PVKA 2PLIA 3S1FA 3AM9A 3NRZB 3TSHA 2P3HA 2VFUA 3FWAA 3EUB3 1VAOA 1FFVC 4JAYA 2BVHA 3POPA 1QLUA 3S1EA 1UXYA 5K8EA 3DEDA 1V97A 2P13A 3D2HA 2YVSA 1JRPA 2W55A 3FW8A 2BVGA 5FXDA 2Y4GA 1E8GA 1DIIA 4OALA 2RK5A 1W1KA 1MBTA 2GQUA 4UD8A 3SR6B 3TSJA 1ZR6A 4MLAA 5AE3A 1AHUA 4XLOA 2PLSA 4PWCA 1I19A 1T3QC 4PZFA 1AHVA 4PVJA 2VFTA 1N5XA 5L6GA 2E3TA 3LLBA 3LAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C0P A;  2O3G A;  2GQT A;  1E8H A;  2P4P A;  3W8W A;  3S1D A;  3BW7 A;  2Q85 A;  2OAI A;  3NVW B;  3B9J B;  4BBY A;  2I0K A;  5HHZ A;  2AXR A;  5HMR A;  2NQW A;  3DQ0 A;  1W1L A;  1N63 C;  3AN1 A;  2BVF A;  5FXF A;  1W1R A;  1VDV A;  4DNS A;  3D2D A;  4EC3 A;  1MBB A;  3NVV B;  1SB3 B;  4BC7 A;  2VFR A;  4ML8 A;  1WVF A;  1RM6 B;  4JB1 A;  4HG0 A;  2VFV A;  1WVE A;  4PVE A;  5HQX A;  1W1J A;  3D2J A;  2W3S A;  1N5W C;  3NS1 B;  1HSK A;  3FW9 A;  4O95 A;  3NVZ B;  3FW7 A;  1QLT A;  1W1M A;  3W8X A;  3GSY A;  5D79 A;  2MBR A;  2QPM A;  5FXE A;  5ADZ A;  3JS8 A;  3AMZ A;  2QKN A;  3NVY B;  2EXR A;  1ZXI C;  5AE2 A;  1AHZ A;  3W8Z A;  1DZN A;  1W1O A;  1E8F A;  3PM9 A;  1WYG A;  1DIQ A;  3TX1 A;  3KJM A;  2R8D A;  1JRO A;  1FO4 A;  1N62 C;  5FXP A;  2Q4W A;  4BC9 A;  1FFU C;  4PVH A;  2VFS A;  2VAO A;  2W54 A;  4PYT A;  1N60 C;  3I99 A;  1W1S A;  1N61 C;  3ETR B;  4ZOH B;  5AE1 A;  3S1C A;  3VTE A;  5G5H B;  2R2Z A;  3HRD C;  2W3R A;  1E0Y A;  1F0X A;  1FIQ B;  5G5G B;  4PWB A;  4BCA A;  1W1Q A;  4PVK A;  2PLI A;  3S1F A;  3AM9 A;  3NRZ B;  3TSH A;  2P3H A;  2VFU A;  3FWA A;  3EUB 3;  1VAO A;  1FFV C;  4JAY A;  2BVH A;  1QLU A;  3S1E A;  1UXY A;  3DED A;  1V97 A;  2P13 A;  3D2H A;  2YVS A;  1JRP A;  2W55 A;  3FW8 A;  2BVG A;  5FXD A;  1E8G A;  1DII A;  4OAL A;  2RK5 A;  1W1K A;  1MBT A;  2GQU A;  4UD8 A;  3SR6 B;  3TSJ A;  1ZR6 A;  4MLA A;  5AE3 A;  1AHU A;  4XLO A;  2PLS A;  4PWC A;  1I19 A;  1T3Q C;  4PZF A;  1AHV A;  4PVJ A;  2VFT A;  1N5X A;  2E3T A;  3LLB A;  3LAE A; 
#chains in the Genus database with same CATH topology
 3C0P A;  2O3G A;  2GQT A;  1E8H A;  3RJ8 A;  2P4P A;  3W8W A;  3S1D A;  3BW7 A;  2Q85 A;  3NVW B;  2OAI A;  5L6F A;  2UUU A;  3B9J B;  4BBY A;  2I0K A;  5HHZ A;  2AXR A;  5HMR A;  2NQW A;  2Y3R A;  3DQ0 A;  5I1W A;  1W1L A;  1N63 C;  3AN1 A;  2BVF A;  5FXF A;  3EJD B;  1W1R A;  1VDV A;  4DNS A;  3D2D A;  4EC3 A;  1MBB A;  3NVV B;  1SB3 B;  4BC7 A;  2VFR A;  4ML8 A;  1WVF A;  1RM6 B;  4JB1 A;  4HG0 A;  2VFV A;  1WVE A;  4PVE A;  5HQX A;  2IPI A;  1W1J A;  3D2J A;  2W3S A;  2Y3S A;  1N5W C;  3NS1 B;  1HSK A;  3FW9 A;  4O95 A;  3NVZ B;  3FW7 A;  1QLT A;  1W1M A;  3W8X A;  3GSY A;  5D79 A;  2MBR A;  2QPM A;  5FXE A;  5ADZ A;  3JS8 A;  3AMZ A;  2QKN A;  2UUV A;  3NVY B;  2EXR A;  1ZXI C;  5AE2 A;  1AHZ A;  3W8Z A;  1DZN A;  1W1O A;  3EJB B;  1E8F A;  3PM9 A;  1WYG A;  1DIQ A;  3TX1 A;  3KJM A;  3EJE B;  2R8D A;  1JRO A;  1FO4 A;  1N62 C;  5FXP A;  2Q4W A;  4BC9 A;  1FFU C;  3HSU A;  4PVH A;  2VFS A;  2VAO A;  2W54 A;  2Y08 A;  2WDW A;  4PYT A;  1N60 C;  5I1V A;  3I99 A;  1W1S A;  1N61 C;  3ETR B;  4ZOH B;  5AE1 A;  3S1C A;  3VTE A;  5AWV A;  5G5H B;  2R2Z A;  3HRD C;  2W3R A;  3PQB A;  1E0Y A;  1F0X A;  1FIQ B;  5G5G B;  4PWB A;  4BCA A;  1W1Q A;  3RJA A;  4PVK A;  2PLI A;  3S1F A;  3AM9 A;  3NRZ B;  3TSH A;  2P3H A;  2VFU A;  3FWA A;  3EUB 3;  1VAO A;  1FFV C;  4JAY A;  2BVH A;  3POP A;  1QLU A;  3S1E A;  1UXY A;  5K8E A;  3DED A;  1V97 A;  2P13 A;  3D2H A;  2YVS A;  1JRP A;  2W55 A;  3FW8 A;  2BVG A;  5FXD A;  2Y4G A;  1E8G A;  1DII A;  4OAL A;  2RK5 A;  1W1K A;  1MBT A;  2GQU A;  4UD8 A;  3SR6 B;  3TSJ A;  1ZR6 A;  4MLA A;  5AE3 A;  1AHU A;  4XLO A;  2PLS A;  4PWC A;  1I19 A;  1T3Q C;  4PZF A;  1AHV A;  4PVJ A;  2VFT A;  1N5X A;  5L6G A;  2E3T A;  3LLB A;  3LAE A; 
#chains in the Genus database with same CATH homology
 3C0P A;  2O3G A;  2GQT A;  1E8H A;  3RJ8 A;  2P4P A;  3W8W A;  3S1D A;  3BW7 A;  2Q85 A;  2OAI A;  3NVW B;  5L6F A;  2UUU A;  3B9J B;  4BBY A;  2I0K A;  5HHZ A;  2AXR A;  5HMR A;  2NQW A;  2Y3R A;  3DQ0 A;  5I1W A;  1W1L A;  1N63 C;  3AN1 A;  2BVF A;  5FXF A;  1W1R A;  1VDV A;  4DNS A;  3D2D A;  4EC3 A;  1MBB A;  3NVV B;  1SB3 B;  4BC7 A;  2VFR A;  4ML8 A;  1WVF A;  1RM6 B;  4JB1 A;  4HG0 A;  2VFV A;  1WVE A;  4PVE A;  5HQX A;  2IPI A;  1W1J A;  3D2J A;  2W3S A;  2Y3S A;  1N5W C;  3NS1 B;  1HSK A;  3FW9 A;  4O95 A;  3NVZ B;  3FW7 A;  1QLT A;  1W1M A;  3W8X A;  3GSY A;  5D79 A;  2MBR A;  2QPM A;  5FXE A;  5ADZ A;  3JS8 A;  3AMZ A;  2QKN A;  2UUV A;  3NVY B;  2EXR A;  1ZXI C;  5AE2 A;  1AHZ A;  3W8Z A;  1DZN A;  1W1O A;  1E8F A;  3PM9 A;  1WYG A;  1DIQ A;  3TX1 A;  3KJM A;  2R8D A;  1JRO A;  1FO4 A;  1N62 C;  5FXP A;  2Q4W A;  4BC9 A;  1FFU C;  3HSU A;  4PVH A;  2VFS A;  2VAO A;  2W54 A;  2Y08 A;  2WDW A;  4PYT A;  1N60 C;  5I1V A;  3I99 A;  1W1S A;  1N61 C;  3ETR B;  4ZOH B;  5AE1 A;  3S1C A;  3VTE A;  5AWV A;  5G5H B;  2R2Z A;  3HRD C;  2W3R A;  3PQB A;  1E0Y A;  1F0X A;  1FIQ B;  5G5G B;  4PWB A;  4BCA A;  1W1Q A;  3RJA A;  4PVK A;  2PLI A;  3S1F A;  3AM9 A;  3NRZ B;  3TSH A;  2P3H A;  2VFU A;  3FWA A;  3EUB 3;  1VAO A;  1FFV C;  4JAY A;  2BVH A;  3POP A;  1QLU A;  3S1E A;  1UXY A;  5K8E A;  3DED A;  1V97 A;  2P13 A;  3D2H A;  2YVS A;  1JRP A;  2W55 A;  3FW8 A;  2BVG A;  5FXD A;  2Y4G A;  1E8G A;  1DII A;  4OAL A;  2RK5 A;  1W1K A;  1MBT A;  2GQU A;  4UD8 A;  3SR6 B;  3TSJ A;  1ZR6 A;  4MLA A;  5AE3 A;  1AHU A;  4XLO A;  2PLS A;  4PWC A;  1I19 A;  1T3Q C;  4PZF A;  1AHV A;  4PVJ A;  2VFT A;  1N5X A;  5L6G A;  2E3T A;  3LLB A;  3LAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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