2QKNA

Crystal structure of maize cytokinin oxidase/dehydrogenase complexed with phenylurea inhibitor cppu
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
502
structure length
496
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Phenyl- and benzylurea cytokinins as competitive inhibitors of cytokinin oxidase/dehydrogenase: a structural study.
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
total genus 171
structure length 496
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2007-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2qknA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2qknA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 2qknA03
2VFVA 4ML8A 3S1FA 3NVZB 2NQWA 3D2DA 5HHZA 3HRDC 4BC7A 3BW7A 4JAYA 1W1SA 1T3QC 2RK5A 1AHUA 1AHVA 3GSYA 1RM6B 1E8GA 1F0XA 5FXEA 5AE1A 2E3TA 3C0PA 2O3GA 1E8HA 4UD8A 2PLIA 4BCAA 2Q85A 1MBTA 2BVFA 3DQ0A 2QPMA 2R2ZA 1AHZA 4MLAA 1N60C 2MBRA 1UXYA 4PWCA 3S1EA 1W1KA 4BC9A 3NVVB 1E8FA 1W1OA 3AM9A 5ADZA 2Q4WA 4BBYA 1E0YA 4DNSA 1I19A 1W1MA 4PVKA 3NRZB 2GQTA 3W8ZA 1FO4A 1DZNA 1W1RA 5FXFA 1N63C 3PM9A 2W3SA 3VTEA 1VAOA 1WYGA 1MBBA 2W54A 4XLOA 1V97A 1FIQB 3FWAA 3I99A 4ZOHB 3FW8A 3SR6B 3D2HA 4EC3A 3ETRB 1JRPA 2PLSA 4HG0A 2VFRA 4PYTA 2BVGA 3FW9A 1N62C 1HSKA 3S1CA 2GQUA 4PZFA 1DIIA 1FFVC 3B9JB 2I0KA 4PVHA 3W8WA 3FW7A 1VDVA 1SB3B 3TX1A 2VFSA 4JB1A 5HQXA 3NVYB 2VFTA 1ZR6A 3NS1B 4O95A 5AE2A 2W3RA 3AMZA 3W8XA 1N5WC 2YVSA 2AXRA 2P3HA 1WVFA 2P13A 2EXRA 3TSHA 2QKNA 3LAEA 1QLTA 1W1LA 4PVEA 3D2JA 2P4PA 2R8DA 2OAIA 3NVWB 1W1JA 3LLBA 5G5GB 3S1DA 1JROA 5AE3A 2VFUA 2W55A 3EUB3 3TSJA 5HMRA 1QLUA 1WVEA 2BVHA 3KJMA 1ZXIC 2VAOA 4PVJA 5D79A 4PWBA 1N61C 1W1QA 5FXDA 1FFUC 1N5XA 5FXPA 3JS8A 5G5HB 3DEDA 1DIQA 4OALA 3AN1A
chains in the Genus database with same CATH superfamily
2VFVA 4ML8A 3S1FA 3NVZB 2NQWA 3D2DA 5I1VA 5HHZA 3HRDC 4BC7A 3BW7A 4JAYA 1W1SA 1T3QC 2RK5A 1AHUA 1AHVA 3GSYA 1RM6B 1E8GA 2UUVA 1F0XA 5FXEA 5AE1A 2E3TA 3C0PA 2O3GA 5K8EA 1E8HA 4UD8A 2PLIA 4BCAA 2Q85A 1MBTA 2BVFA 3DQ0A 2QPMA 2R2ZA 3POPA 1AHZA 4MLAA 1N60C 2Y3RA 3RJAA 5L6GA 2MBRA 1UXYA 4PWCA 3S1EA 1W1KA 4BC9A 3NVVB 1E8FA 5I1WA 1W1OA 3AM9A 5ADZA 2Q4WA 4BBYA 1E0YA 4DNSA 1I19A 1W1MA 4PVKA 3NRZB 2GQTA 3W8ZA 1FO4A 1DZNA 1W1RA 5FXFA 1N63C 2UUUA 3EJBB 3PM9A 2W3SA 3VTEA 1VAOA 2IPIA 1WYGA 3EJEB 1MBBA 2W54A 4XLOA 1V97A 1FIQB 3FWAA 3I99A 4ZOHB 3FW8A 3SR6B 3HSUA 3D2HA 4EC3A 3ETRB 1JRPA 2PLSA 2Y4GA 4HG0A 2VFRA 4PYTA 2BVGA 3FW9A 1N62C 1HSKA 3RJ8A 3S1CA 2GQUA 4PZFA 1DIIA 1FFVC 3B9JB 2I0KA 4PVHA 3W8WA 3FW7A 1VDVA 1SB3B 3TX1A 3EJDB 2VFSA 4JB1A 3NVYB 5HQXA 2VFTA 1ZR6A 3NS1B 4O95A 5AE2A 2W3RA 3AMZA 3W8XA 1N5WC 2YVSA 2AXRA 2P3HA 5L6FA 1WVFA 2P13A 2EXRA 3TSHA 2QKNA 3LAEA 1QLTA 1W1LA 4PVEA 3D2JA 2P4PA 2R8DA 3NVWB 2OAIA 2Y08A 1W1JA 3LLBA 5G5GB 3S1DA 1JROA 5AE3A 3PQBA 2VFUA 2W55A 3EUB3 3TSJA 5HMRA 1QLUA 1WVEA 2BVHA 3KJMA 1ZXIC 2VAOA 4PVJA 2WDWA 5AWVA 5D79A 4PWBA 1N61C 1W1QA 5FXDA 1FFUC 1N5XA 5FXPA 3JS8A 5G5HB 2Y3SA 3DEDA 1DIQA 4OALA 3AN1A
chains in the Genus database with same CATH topology
2VFVA 4ML8A 3S1FA 3NVZB 2NQWA 3D2DA 5I1VA 5HHZA 3HRDC 4BC7A 3BW7A 4JAYA 1W1SA 1T3QC 2RK5A 1AHUA 1AHVA 3GSYA 1RM6B 1E8GA 2UUVA 1F0XA 5FXEA 5AE1A 2E3TA 3C0PA 2O3GA 5K8EA 1E8HA 4UD8A 2PLIA 4BCAA 2Q85A 1MBTA 2BVFA 3DQ0A 2QPMA 2R2ZA 3POPA 1AHZA 4MLAA 1N60C 2Y3RA 3RJAA 5L6GA 2MBRA 1UXYA 4PWCA 3S1EA 1W1KA 4BC9A 3NVVB 1E8FA 5I1WA 1W1OA 3AM9A 5ADZA 2Q4WA 4BBYA 1E0YA 4DNSA 1I19A 1W1MA 4PVKA 3NRZB 2GQTA 3W8ZA 1FO4A 1DZNA 1W1RA 5FXFA 1N63C 2UUUA 3PM9A 2W3SA 3VTEA 1VAOA 2IPIA 1WYGA 1MBBA 2W54A 4XLOA 1V97A 1FIQB 3FWAA 3I99A 4ZOHB 3FW8A 3SR6B 3HSUA 3D2HA 4EC3A 3ETRB 1JRPA 2PLSA 2Y4GA 4HG0A 2VFRA 4PYTA 2BVGA 3FW9A 1N62C 1HSKA 3RJ8A 3S1CA 2GQUA 4PZFA 1DIIA 1FFVC 3B9JB 2I0KA 4PVHA 3W8WA 3FW7A 1VDVA 1SB3B 3TX1A 2VFSA 4JB1A 5HQXA 3NVYB 2VFTA 1ZR6A 3NS1B 4O95A 5AE2A 2W3RA 3AMZA 3W8XA 1N5WC 2YVSA 2AXRA 2P3HA 5L6FA 1WVFA 2P13A 2EXRA 3TSHA 2QKNA 3LAEA 1QLTA 1W1LA 4PVEA 3D2JA 2P4PA 2R8DA 2OAIA 2Y08A 3NVWB 1W1JA 3LLBA 5G5GB 3S1DA 1JROA 5AE3A 3PQBA 2VFUA 2W55A 3EUB3 3TSJA 5HMRA 1QLUA 1WVEA 2BVHA 3KJMA 1ZXIC 2VAOA 4PVJA 2WDWA 5AWVA 5D79A 4PWBA 1N61C 1W1QA 5FXDA 1FFUC 1N5XA 5FXPA 3JS8A 5G5HB 2Y3SA 3DEDA 1DIQA 4OALA 3AN1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFV A;  4ML8 A;  3S1F A;  3NVZ B;  2NQW A;  3D2D A;  5HHZ A;  3HRD C;  4BC7 A;  3BW7 A;  4JAY A;  1W1S A;  1T3Q C;  2RK5 A;  1AHU A;  1AHV A;  3GSY A;  1RM6 B;  1E8G A;  1F0X A;  5FXE A;  5AE1 A;  2E3T A;  3C0P A;  2O3G A;  1E8H A;  4UD8 A;  2PLI A;  4BCA A;  2Q85 A;  1MBT A;  2BVF A;  3DQ0 A;  2QPM A;  2R2Z A;  1AHZ A;  4MLA A;  1N60 C;  2MBR A;  1UXY A;  4PWC A;  3S1E A;  1W1K A;  4BC9 A;  3NVV B;  1E8F A;  1W1O A;  3AM9 A;  5ADZ A;  2Q4W A;  4BBY A;  1E0Y A;  4DNS A;  1I19 A;  1W1M A;  4PVK A;  3NRZ B;  2GQT A;  3W8Z A;  1FO4 A;  1DZN A;  1W1R A;  5FXF A;  1N63 C;  3PM9 A;  2W3S A;  3VTE A;  1VAO A;  1WYG A;  1MBB A;  2W54 A;  4XLO A;  1V97 A;  1FIQ B;  3FWA A;  3I99 A;  4ZOH B;  3FW8 A;  3SR6 B;  3D2H A;  4EC3 A;  3ETR B;  1JRP A;  2PLS A;  4HG0 A;  2VFR A;  4PYT A;  2BVG A;  3FW9 A;  1N62 C;  1HSK A;  3S1C A;  2GQU A;  4PZF A;  1DII A;  1FFV C;  3B9J B;  2I0K A;  4PVH A;  3W8W A;  3FW7 A;  1VDV A;  1SB3 B;  3TX1 A;  2VFS A;  4JB1 A;  5HQX A;  3NVY B;  2VFT A;  1ZR6 A;  3NS1 B;  4O95 A;  5AE2 A;  2W3R A;  3AMZ A;  3W8X A;  1N5W C;  2YVS A;  2AXR A;  2P3H A;  1WVF A;  2P13 A;  2EXR A;  3TSH A;  2QKN A;  3LAE A;  1QLT A;  1W1L A;  4PVE A;  3D2J A;  2P4P A;  2R8D A;  2OAI A;  3NVW B;  1W1J A;  3LLB A;  5G5G B;  3S1D A;  1JRO A;  5AE3 A;  2VFU A;  2W55 A;  3EUB 3;  3TSJ A;  5HMR A;  1QLU A;  1WVE A;  2BVH A;  3KJM A;  1ZXI C;  2VAO A;  4PVJ A;  5D79 A;  4PWB A;  1N61 C;  1W1Q A;  5FXD A;  1FFU C;  1N5X A;  5FXP A;  3JS8 A;  5G5H B;  3DED A;  1DIQ A;  4OAL A;  3AN1 A; 
#chains in the Genus database with same CATH topology
 2VFV A;  4ML8 A;  3S1F A;  3NVZ B;  2NQW A;  3D2D A;  5I1V A;  5HHZ A;  3HRD C;  4BC7 A;  3BW7 A;  4JAY A;  1W1S A;  1T3Q C;  2RK5 A;  1AHU A;  1AHV A;  3GSY A;  1RM6 B;  1E8G A;  2UUV A;  1F0X A;  5FXE A;  5AE1 A;  2E3T A;  3C0P A;  2O3G A;  5K8E A;  1E8H A;  4UD8 A;  2PLI A;  4BCA A;  2Q85 A;  1MBT A;  2BVF A;  3DQ0 A;  2QPM A;  2R2Z A;  3POP A;  1AHZ A;  4MLA A;  1N60 C;  2Y3R A;  3RJA A;  5L6G A;  2MBR A;  1UXY A;  4PWC A;  3S1E A;  1W1K A;  4BC9 A;  3NVV B;  1E8F A;  5I1W A;  1W1O A;  3AM9 A;  5ADZ A;  2Q4W A;  4BBY A;  1E0Y A;  4DNS A;  1I19 A;  1W1M A;  4PVK A;  3NRZ B;  2GQT A;  3W8Z A;  1FO4 A;  1DZN A;  1W1R A;  5FXF A;  1N63 C;  2UUU A;  3EJB B;  3PM9 A;  2W3S A;  3VTE A;  1VAO A;  2IPI A;  1WYG A;  3EJE B;  1MBB A;  2W54 A;  4XLO A;  1V97 A;  1FIQ B;  3FWA A;  3I99 A;  4ZOH B;  3FW8 A;  3SR6 B;  3HSU A;  3D2H A;  4EC3 A;  3ETR B;  1JRP A;  2PLS A;  2Y4G A;  4HG0 A;  2VFR A;  4PYT A;  2BVG A;  3FW9 A;  1N62 C;  1HSK A;  3RJ8 A;  3S1C A;  2GQU A;  4PZF A;  1DII A;  1FFV C;  3B9J B;  2I0K A;  4PVH A;  3W8W A;  3FW7 A;  1VDV A;  1SB3 B;  3TX1 A;  3EJD B;  2VFS A;  4JB1 A;  3NVY B;  5HQX A;  2VFT A;  1ZR6 A;  3NS1 B;  4O95 A;  5AE2 A;  2W3R A;  3AMZ A;  3W8X A;  1N5W C;  2YVS A;  2AXR A;  2P3H A;  5L6F A;  1WVF A;  2P13 A;  2EXR A;  3TSH A;  2QKN A;  3LAE A;  1QLT A;  1W1L A;  4PVE A;  3D2J A;  2P4P A;  2R8D A;  3NVW B;  2OAI A;  2Y08 A;  1W1J A;  3LLB A;  5G5G B;  3S1D A;  1JRO A;  5AE3 A;  3PQB A;  2VFU A;  2W55 A;  3EUB 3;  3TSJ A;  5HMR A;  1QLU A;  1WVE A;  2BVH A;  3KJM A;  1ZXI C;  2VAO A;  4PVJ A;  2WDW A;  5AWV A;  5D79 A;  4PWB A;  1N61 C;  1W1Q A;  5FXD A;  1FFU C;  1N5X A;  5FXP A;  3JS8 A;  5G5H B;  2Y3S A;  3DED A;  1DIQ A;  4OAL A;  3AN1 A; 
#chains in the Genus database with same CATH homology
 2VFV A;  4ML8 A;  3S1F A;  3NVZ B;  2NQW A;  3D2D A;  5I1V A;  5HHZ A;  3HRD C;  4BC7 A;  3BW7 A;  4JAY A;  1W1S A;  1T3Q C;  2RK5 A;  1AHU A;  1AHV A;  3GSY A;  1RM6 B;  1E8G A;  2UUV A;  1F0X A;  5FXE A;  5AE1 A;  2E3T A;  3C0P A;  2O3G A;  5K8E A;  1E8H A;  4UD8 A;  2PLI A;  4BCA A;  2Q85 A;  1MBT A;  2BVF A;  3DQ0 A;  2QPM A;  2R2Z A;  3POP A;  1AHZ A;  4MLA A;  1N60 C;  2Y3R A;  3RJA A;  5L6G A;  2MBR A;  1UXY A;  4PWC A;  3S1E A;  1W1K A;  4BC9 A;  3NVV B;  1E8F A;  5I1W A;  1W1O A;  3AM9 A;  5ADZ A;  2Q4W A;  4BBY A;  1E0Y A;  4DNS A;  1I19 A;  1W1M A;  4PVK A;  3NRZ B;  2GQT A;  3W8Z A;  1FO4 A;  1DZN A;  1W1R A;  5FXF A;  1N63 C;  2UUU A;  3PM9 A;  2W3S A;  3VTE A;  1VAO A;  2IPI A;  1WYG A;  1MBB A;  2W54 A;  4XLO A;  1V97 A;  1FIQ B;  3FWA A;  3I99 A;  4ZOH B;  3FW8 A;  3SR6 B;  3HSU A;  3D2H A;  4EC3 A;  3ETR B;  1JRP A;  2PLS A;  2Y4G A;  4HG0 A;  2VFR A;  4PYT A;  2BVG A;  3FW9 A;  1N62 C;  1HSK A;  3RJ8 A;  3S1C A;  2GQU A;  4PZF A;  1DII A;  1FFV C;  3B9J B;  2I0K A;  4PVH A;  3W8W A;  3FW7 A;  1VDV A;  1SB3 B;  3TX1 A;  2VFS A;  4JB1 A;  5HQX A;  3NVY B;  2VFT A;  1ZR6 A;  3NS1 B;  4O95 A;  5AE2 A;  2W3R A;  3AMZ A;  3W8X A;  1N5W C;  2YVS A;  2AXR A;  2P3H A;  5L6F A;  1WVF A;  2P13 A;  2EXR A;  3TSH A;  2QKN A;  3LAE A;  1QLT A;  1W1L A;  4PVE A;  3D2J A;  2P4P A;  2R8D A;  2OAI A;  2Y08 A;  3NVW B;  1W1J A;  3LLB A;  5G5G B;  3S1D A;  1JRO A;  5AE3 A;  3PQB A;  2VFU A;  2W55 A;  3EUB 3;  3TSJ A;  5HMR A;  1QLU A;  1WVE A;  2BVH A;  3KJM A;  1ZXI C;  2VAO A;  4PVJ A;  2WDW A;  5AWV A;  5D79 A;  4PWB A;  1N61 C;  1W1Q A;  5FXD A;  1FFU C;  1N5X A;  5FXP A;  3JS8 A;  5G5H B;  2Y3S A;  3DED A;  1DIQ A;  4OAL A;  3AN1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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