2QKWA

Structural basis for activation of plant immunity by bacterial effector protein avrpto
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
101
structure length
101
Chain Sequence
DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDDMRSAITDWSDMREALQHAMGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Avirulence protein
publication title The structural basis for activation of plant immunity by bacterial effector protein AvrPto
pubmed doi rcsb
source organism Pseudomonas syringae
total genus 36
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 2007-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11592 AvrPto Central core of the bacterial effector protein AvrPto
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.140 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 AvrPto 2qkwA00
1R5EA 2QKWA
chains in the Genus database with same CATH superfamily
3T46A 3RPMA 3I04A 3VEAA 1QWUA 2WINM 2KHOA 1SU6A 3O3MB 3Q84A 3D52A 3EJPA 3BUBA 4I1QA 3DX0A 1E9VA 3EJUA 2X3VA 3SYVA 4EZOA 4EZVA 1O7DC 4AZ7A 1JQKA 2F7QA 3D50A 1HTYA 1Y2OA 5FLEX 2F1BA 4R5JA 4KIKA 4H6IA 4M0MA 3B53X 3I39X 3ER9B 1SUFA 1GNLA 1I4LA 4EZNA 2F7PA 2YL6A 3QNIA 1E2UA 3BVXA 3ZEDA 1URUA 4JNFA 1X03A 1OA1A 3CAZA 2OW7A 4FZPA 2EWFA 4DCNC 3CZSA 3RV1A 2F7RA 2YL9A 1TQTA 4G6QA 4AZIA 4UDXX 4E3CA 3DPOA 3UITA 2OW6A 3DX2A 3GI7A 4IWPA 1OA0A 4AZ5A 2YLLA 4AZGA 3KAWA 4HY9A 4IWOA 1GN9A 3BLBA 1QX1A 3EJSA 4EZSA 3D4YA 2EFKA 2QKWA 4JN4A 2YI9A 4F00A 4NSWA 2ND1A 3KDRA 2D4CA 3T47A 1I4DA 4AZCB 5E84A 1TQWA 4HR1A 5TKYA 3EJRA 4HYBA 2WYIA 2RT6A 3D4ZA 4EZZA 2ZXQA 2OBMA 4IM3A 3T49A 3OHXM 4PO2A 2JNSA 2YLAA 4F01A 1DKXA 4IM2A 2C08A 4IWQA 3CVRA 4R5KA 3L3OM 4JWCA 4JL9A 1HXKA 3T4AG 3OK8A 4AZBA 3Q0KA 1PS3A 2V0OA 1ZYLA 2QXLA 1I4TA 3BVVA 3QNJA 4HR1B 3RV0A 4EZQA 3QWEA 2QFFA 3DPQA 4FZOA 3SOGA 1OAOA 4EZRA 4D8JA 2LXYA 2X3WA 2YI8A 1R33A 2RAJA 4AZCA 1TQUA 4AZHA 1SU8A 2F1AA 1UPXA 3DYTA 1YWMA 3BUPA 3LMFA 2Q13A 3BUQA 4NQIA 3KAVA 3ERCC 2ND0A 3G9GA 3DX3A 3EJQA 2X3XA 2Z8YA 4EZUA 4AVMA 3LLLA 4IW0A 2WYHA 1ZWWA 2Z0OA 4JWDA 3CKDA 1X04A 4R5GA 1U00A 4H8SA 3BUIA 3HAIA 2OBLA 4DYLA 3D2EA 2YIVX 3O3OB 4H6HA 1SU7A 3T48A 1I49A 4AKVA 4EZWA 3CV5A 3DDFA 2RAIA 3M3WA 2N3KA 1O7DB 2YL5A 4ATMA 4B9QA 2RAKA 3VEBA 3EJTA 2GA9D 4JWIA 4EZPA 5C5BA 4WPEA 2D1LA 2Z0VA 2F7OA 1DKZA 3LVTA 3FD9A 4NPHA 1MJGA 4EZYA 2O0I1 3BVUA 2Z0NA 1LQ7A 3QA8A 3ACOA 2YKTA 4AZ6A 1R5EA 1QWNA 1WDZA 3BVTA 4FM3A 3L3PA 2Q12A 3C7NA 2OZNB 4FZSA 1W9MA 2X5CA 2GAFD 3F7WA 3O3NB 3I01A 2YIAA 3A98A 2FICA 1DKYA 1HWWA 5FIGA 2ALWA 3HAHA 3DDGA 2MI7A 5C5BB 2GF4A 3I2WA 3BVWA 3HAJA 2EX3B 2JNKA 3D2FA 3D51A 4UDYX 1R34A 3DX1A 2YL8A 2LM0A 3BUDA 4BNEA 3DPPA 2EFLA 4R5LA 5KBPA 2OO2A 2FYVA 4E81A 1TQSA 3VKHA 2PMRA 4WPCA 4EZTA 3ER8C 4R5IA 2F18A 1TQVA 3DX4A 4JNEA 2NCZA 3PLTA 3B52X 2PY6A 3B51X 2ELBA 4JWEA 3OWGA 1E1DA 1GNTA 4JLCA 3QE6A 3CZNA 4EZXA 2YIBA 4KIKB 3ABHA 4IM0A
chains in the Genus database with same CATH topology
1R5EA 2QKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R5E A;  2QKW A; 
#chains in the Genus database with same CATH topology
 3T46 A;  3RPM A;  3I04 A;  3VEA A;  1QWU A;  2WIN M;  2KHO A;  1SU6 A;  3O3M B;  3Q84 A;  3D52 A;  3EJP A;  3BUB A;  4I1Q A;  3DX0 A;  1E9V A;  3EJU A;  2X3V A;  3SYV A;  4EZO A;  4EZV A;  1O7D C;  4AZ7 A;  1JQK A;  2F7Q A;  3D50 A;  1HTY A;  1Y2O A;  5FLE X;  2F1B A;  4R5J A;  4KIK A;  4H6I A;  4M0M A;  3B53 X;  3I39 X;  3ER9 B;  1SUF A;  1GNL A;  1I4L A;  4EZN A;  2F7P A;  2YL6 A;  3QNI A;  1E2U A;  3BVX A;  3ZED A;  1URU A;  4JNF A;  1X03 A;  1OA1 A;  3CAZ A;  2OW7 A;  4FZP A;  2EWF A;  4DCN C;  3CZS A;  3RV1 A;  2F7R A;  2YL9 A;  1TQT A;  4G6Q A;  4AZI A;  4UDX X;  4E3C A;  3DPO A;  3UIT A;  2OW6 A;  3DX2 A;  3GI7 A;  4IWP A;  1OA0 A;  4AZ5 A;  2YLL A;  4AZG A;  3KAW A;  4HY9 A;  4IWO A;  1GN9 A;  3BLB A;  1QX1 A;  3EJS A;  4EZS A;  3D4Y A;  2EFK A;  2QKW A;  4JN4 A;  2YI9 A;  4F00 A;  4NSW A;  2ND1 A;  3KDR A;  2D4C A;  3T47 A;  1I4D A;  4AZC B;  5E84 A;  1TQW A;  4HR1 A;  5TKY A;  3EJR A;  4HYB A;  2WYI A;  2RT6 A;  3D4Z A;  4EZZ A;  2ZXQ A;  2OBM A;  4IM3 A;  3T49 A;  3OHX M;  4PO2 A;  2JNS A;  2YLA A;  4F01 A;  1DKX A;  4IM2 A;  2C08 A;  4IWQ A;  3CVR A;  4R5K A;  3L3O M;  4JWC A;  4JL9 A;  1HXK A;  3T4A G;  3OK8 A;  4AZB A;  3Q0K A;  1PS3 A;  2V0O A;  1ZYL A;  2QXL A;  1I4T A;  3BVV A;  3QNJ A;  4HR1 B;  3RV0 A;  4EZQ A;  3QWE A;  2QFF A;  3DPQ A;  4FZO A;  3SOG A;  1OAO A;  4EZR A;  4D8J A;  2LXY A;  2X3W A;  2YI8 A;  1R33 A;  2RAJ A;  4AZC A;  1TQU A;  4AZH A;  1SU8 A;  2F1A A;  1UPX A;  3DYT A;  1YWM A;  3BUP A;  3LMF A;  2Q13 A;  3BUQ A;  4NQI A;  3KAV A;  3ERC C;  2ND0 A;  3G9G A;  3DX3 A;  3EJQ A;  2X3X A;  2Z8Y A;  4EZU A;  4AVM A;  3LLL A;  4IW0 A;  2WYH A;  1ZWW A;  2Z0O A;  4JWD A;  3CKD A;  1X04 A;  4R5G A;  1U00 A;  4H8S A;  3BUI A;  3HAI A;  2OBL A;  4DYL A;  3D2E A;  2YIV X;  3O3O B;  4H6H A;  1SU7 A;  3T48 A;  1I49 A;  4AKV A;  4EZW A;  3CV5 A;  3DDF A;  2RAI A;  3M3W A;  2N3K A;  1O7D B;  2YL5 A;  4ATM A;  4B9Q A;  2RAK A;  3VEB A;  3EJT A;  2GA9 D;  4JWI A;  4EZP A;  5C5B A;  4WPE A;  2D1L A;  2Z0V A;  2F7O A;  1DKZ A;  3LVT A;  3FD9 A;  4NPH A;  1MJG A;  4EZY A;  2O0I 1;  3BVU A;  2Z0N A;  1LQ7 A;  3QA8 A;  3ACO A;  2YKT A;  4AZ6 A;  1R5E A;  1QWN A;  1WDZ A;  3BVT A;  4FM3 A;  3L3P A;  2Q12 A;  3C7N A;  2OZN B;  4FZS A;  1W9M A;  2X5C A;  2GAF D;  3F7W A;  3O3N B;  3I01 A;  2YIA A;  3A98 A;  2FIC A;  1DKY A;  1HWW A;  5FIG A;  2ALW A;  3HAH A;  3DDG A;  2MI7 A;  5C5B B;  2GF4 A;  3I2W A;  3BVW A;  3HAJ A;  2EX3 B;  2JNK A;  3D2F A;  3D51 A;  4UDY X;  1R34 A;  3DX1 A;  2YL8 A;  2LM0 A;  3BUD A;  4BNE A;  3DPP A;  2EFL A;  4R5L A;  5KBP A;  2OO2 A;  2FYV A;  4E81 A;  1TQS A;  3VKH A;  2PMR A;  4WPC A;  4EZT A;  3ER8 C;  4R5I A;  2F18 A;  1TQV A;  3DX4 A;  4JNE A;  2NCZ A;  3PLT A;  3B52 X;  2PY6 A;  3B51 X;  2ELB A;  4JWE A;  3OWG A;  1E1D A;  1GNT A;  4JLC A;  3QE6 A;  3CZN A;  4EZX A;  2YIB A;  4KIK B;  3ABH A;  4IM0 A; 
#chains in the Genus database with same CATH homology
 1R5E A;  2QKW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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