2QL0A

Zinc-substituted rubredoxin from desulfovibrio vulgaris
Total Genus 3
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
52
structure length
52
Chain Sequence
MKKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Electron transport
molecule keywords Rubredoxin
source organism Desulfovibrio vulgaris
total genus 3
structure length 52
sequence length 52
ec nomenclature
pdb deposition date 2007-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 2ql0A00
2QL0A 2V3BB 1BE7A 1IRNA 3KYUA 2HR5A 2DSXA 1SMUA 1B2JA 4RXNA 4TPUA 4AR6A 1T9PA 2GMGA 1B2OA 2LCQA 3RZ6A 1RDGA 8RXNA 1FHHA 4POFA 1SMMA 4YWLA 1R0GA 4POGA 1B13A 2VL6A 3PWFA 2MS3A 1FHMA 2KN9A 3A44A 1T9QA 2PYAA 1RDVA 4ME3A 1BRFA 1LKOA 2PVEA 1JYBA 1S24A 1LKMA 3RZTA 3MPSA 1NNQA 3RYGA 1R0FA 4YWMA 1R0IA 6RXNA 1QCVA 1RYTA 7RXNA 4AR5A 3SS2A 1CAAA 1IU5A 1DX8A 1R0HA 1DVBA 4AR3A 1RWDA 3KYYA 5AI2A 5IY0A 1YUXA 1VCXA 3QVDA 4K9FA 1LTLA 1S2ZA 3KYWA 1C09A 1T9OA 1S30A 1YUZA 4AR4A 1IROA 1BQ8A 3KYVA 2PVXA 2KKDA 1YV1A 1H7VA 1ZRPA 1SMWA 2K2DA 3KYXA 1RB9A 1YK4A 1CADA 5RXNA 1LKPA 3PZAA 2M4YA 1BQ9A 1R0JA 1QYBA 5AI3A 1IU6A 1YK5A 2RDVA 1BFYA 1B71A 1E8JA
chains in the Genus database with same CATH superfamily
2B5ID 2AYJA 1WCML 1TWGL 2R92L 2Y0SP 1SMUA 4TVMA 5MF6A 1PFVA 4AR6A 2LCQA 1RDGA 3H9BA 4A93L 1FHHA 1R0GA 3HOYL 3HOZL 3WWNB 2MS3A 2H12A 4Y52L 1K83L 3LPEB 2RFKB 1VZHA 5C44L 2JI2A 3HOUL 1NNQA 3K35A 2O5JD 1TWHL 3GTOL 4A3DL 3S14L 4A3BL 5IYCL 3PO3L 4LHNA 3HKZP 3S1NL 1IU5A 4U671 4A3LL 5GAGc 1RWDA 3P2AA 4AI3A 3VPBE 4BBRL 1VCXA 4X6AL 1R9TL 5M3ML 4AHZA 1S2ZA 3S2DL 3PKJA 3ZG6A 1SFOL 3S2HL 1YUZA 2XJTA 3NFPI 2XJSA 4AR4A 3S16L 1BQ8A 3KYVA 5GADc 3PIP1 3FDJA 1RB9A 1YK4A 4AI1A 2JI1A 3HOVL 1R0JA 5AI3A 1IU6A 1PZXA 2E2HL 1B71A 1E8JA 3HJWB 4C2M1 4V196 2ERSA 3S1RL 2QL0A 2NVYL 4GS7D 1IW7D 1TWAL 1BE7A 5FJ8L 4AHYA 3KYUA 3H97A 5IP7L 2WB1P 1B2JA 3I4ML 1I3QL 5IP9L 2GMGA 3JR7A 3S17L 4POFA 3P8BA 4YWLA 2PSMC 4C3IL 3HOXL 5IYBL 1Z92B 1PFUA 4BY7L 3GTPL 4A3ML 3A44A 2APOB 2A6ED 2CKCA 1RDVA 4ME3A 2B63L 2PVEA 1S24A 2V0EA 3PO2L 3S15L 3RZDL 3RZTA 3MPSA 1TWFL 3B08B 2ERJA 1RYTA 5EIOC 4AR5A 5JVG1 5MFZA 1F4LA 2NVXL 1R0HA 4AR3A 2BE5D 2R93L 1Y1WL 5AI2A 5EINC 4A3GL 3QVDA 1LTLA 4Y7NL 4A3IL 3HOWL 1IROA 2KKDA 1H7VA 2ZIXA 4A3KL 1PFYA 2K2DA 5JVH1 2PPTA 1LKPA 3PZAA 1BQ9A 5MFPA 2C6AA 4QIWP 1BFYA 3K7AL 2A68D 1WJVA 3RZOL 5DM71 5AN9H 2AQCA 2V3BB 2XJRA 2HR5A 2DSXA 4RXNA 4B8CD 4LHLA 3GTML 2CKAA 3MSUA 1B2OA 2PMZP 3I4NL 4AI0A 1NXGA 5C4XL 8RXNA 2C6BA 1OWCA 1OWBA 4JAEA 2JA6L 4JAGA 3GTJL 5C4JL 3WWLA 2HVYC 3PWFA 3M3YL 3S1ML 2R7ZL 3M4OL 5M5YL 1LKMA 3S1QL 4XXBB 2A6HD 3RYGA 4ZN1B 4YWMA 3PKIA 3CQZL 2V0FA 4BBSL 7RXNA 3LWRB 4BXXL 2XJUA 3SS2A 3MQKB 3PL5A 3LWVB 3H0GL 1DVBA 1P7PA 2JA8L 3H9CA 5M5WL 5IYDL 4WFN1 5M5XL 1YUXA 2M6PA 4A3FL 1I50L 3IU3I 1TWCL 1C09A 1T9OA 5DM61 4G6BA 1Y1VL 3GTQL 2NYDA 2Z3QB 1ZRPA 1SMWA 2E2JL 1CADA 2M4YA 3GTLL 3GTKL 1QYBA 1YK5A 3HAXC 3LWQB 2XJVA 2J9UB 4AI2A 2NVTL 2NVQL 3J7Y1 1I6HL 2E2IL 2M4VA 2L0ZA 1IRNA 1NXEA 2AUSB 4JADA 4TPUA 2JA5L 1T9PA 1VZIA 3FKIL 4AYBP 5FLML 3RZ6A 1SMMA 4E6YA 4ZN3B 5H1Sc 4POGA 1B13A 3PIO1 2VL6A 5MLC3 1FHMA 2KN9A 1T9QA 2PYAA 3H3VM 1BRFA 1LKOA 2JI3A 1JYBA 4A3JL 5GAEc 3H99A 4AHWA 2JA7L 4BY1L 3GTGL 3QQCE 5GAHc 1R0FA 1R0IA 4XGHA 6RXNA 1ODHA 1QCVA 4C3JL 1PFWA 2M6OA 1QQTA 2VUML 1CAAA 3B0AB 4UY81 1DX8A 2A69D 5C3EL 4C3HL 3KYYA 5IY0A 2EY4E 4K9FA 4JAFA 3LWOB 4A3CL 2YU9L 2CR8A 3LWPB 3KYWA 2WAQP 1S30A 5MGNA 1VZGA 4A3EL 2PVXA 1YV1A 5M3FL 3J7Z1 5K2ME 2XJQA 2XJPA 3KYXA 5RXNA 4AHXA 3LNLA 2RDVA 1RYQA 3HJYB 2Z3RB
chains in the Genus database with same CATH topology
2XJVA 2J9UB 4AI2A 1E8JA 2B5ID 1WJVA 4V196 2AYJA 2ERSA 2QL0A 3J7Y1 5DM71 4GS7D 5AN9H 1IW7D 2V3BB 1BE7A 2M4VA 2XJRA 2L0ZA 1IRNA 4AHYA 3KYUA 2HR5A 2DSXA 1SMUA 4TVMA 1NXEA 1B2JA 5MF6A 4RXNA 4B8CD 4JADA 4TPUA 4LHLA 2CKAA 4AR6A 1T9PA 2GMGA 1B2OA 1VZIA 3MSUA 2LCQA 4AI0A 3RZ6A 1NXGA 1RDGA 8RXNA 1FHHA 2C6BA 4POFA 1SMMA 3P8BA 1OWCA 1OWBA 2PSMC 4JAEA 4YWLA 1R0GA 4E6YA 4ZN3B 5H1Sc 4JAGA 4POGA 1B13A 1Z92B 3WWLA 3PIO1 2VL6A 3WWNB 3PWFA 2MS3A 2H12A 5MLC3 1FHMA 2KN9A 3LPEB 3A44A 1T9QA 2PYAA 2A6ED 2CKCA 1RDVA 4ME3A 1BRFA 1LKOA 1VZHA 2PVEA 2JI3A 1JYBA 1S24A 5GAEc 2V0EA 2JI2A 4AHWA 1LKMA 3RZTA 3MPSA 3QQCE 1NNQA 3K35A 4XXBB 5GAHc 2A6HD 3RYGA 4ZN1B 1R0FA 4YWMA 2O5JD 3PKIA 2V0FA 3B08B 2ERJA 4XGHA 1R0IA 1QCVA 1RYTA 6RXNA 1ODHA 7RXNA 5EIOC 2XJUA 4AR5A 4LHNA 5JVG1 2M6OA 3SS2A 1CAAA 1IU5A 3B0AB 5MFZA 4UY81 1DX8A 1R0HA 4U671 1DVBA 4AR3A 2BE5D 5GAGc 1RWDA 2A69D 3P2AA 4AI3A 3KYYA 3VPBE 4WFN1 5AI2A 5EINC 5IY0A 1YUXA 2M6PA 1VCXA 3QVDA 4K9FA 1LTLA 4JAFA 3IU3I 4AHZA 1S2ZA 2CR8A 3PKJA 3ZG6A 3KYWA 1C09A 1T9OA 1S30A 1YUZA 2XJTA 3NFPI 1VZGA 2XJSA 4AR4A 5MGNA 1IROA 1BQ8A 5DM61 4G6BA 3KYVA 2PVXA 2KKDA 1YV1A 5GADc 2NYDA 3PIP1 1H7VA 2ZIXA 3J7Z1 2Z3QB 1ZRPA 1SMWA 5K2ME 2XJQA 2XJPA 2K2DA 3KYXA 1RB9A 5JVH1 1YK4A 1CADA 2PPTA 1LKPA 2JI1A 3PZAA 2M4YA 4AI1A 5RXNA 1BQ9A 4AHXA 1R0JA 1QYBA 5AI3A 5MFPA 1IU6A 1YK5A 2C6AA 3LNLA 2RDVA 1BFYA 1RYQA 1B71A 2Z3RB 2A68D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QL0 A;  2V3B B;  1BE7 A;  1IRN A;  3KYU A;  2HR5 A;  2DSX A;  1SMU A;  1B2J A;  4RXN A;  4TPU A;  4AR6 A;  1T9P A;  2GMG A;  1B2O A;  2LCQ A;  3RZ6 A;  1RDG A;  8RXN A;  1FHH A;  4POF A;  1SMM A;  4YWL A;  1R0G A;  4POG A;  1B13 A;  2VL6 A;  3PWF A;  2MS3 A;  1FHM A;  2KN9 A;  3A44 A;  1T9Q A;  2PYA A;  1RDV A;  4ME3 A;  1BRF A;  1LKO A;  2PVE A;  1JYB A;  1S24 A;  1LKM A;  3RZT A;  3MPS A;  1NNQ A;  3RYG A;  1R0F A;  4YWM A;  1R0I A;  6RXN A;  1QCV A;  1RYT A;  7RXN A;  4AR5 A;  3SS2 A;  1CAA A;  1IU5 A;  1DX8 A;  1R0H A;  1DVB A;  4AR3 A;  1RWD A;  3KYY A;  5AI2 A;  5IY0 A;  1YUX A;  1VCX A;  3QVD A;  4K9F A;  1LTL A;  1S2Z A;  3KYW A;  1C09 A;  1T9O A;  1S30 A;  1YUZ A;  4AR4 A;  1IRO A;  1BQ8 A;  3KYV A;  2PVX A;  2KKD A;  1YV1 A;  1H7V A;  1ZRP A;  1SMW A;  2K2D A;  3KYX A;  1RB9 A;  1YK4 A;  1CAD A;  5RXN A;  1LKP A;  3PZA A;  2M4Y A;  1BQ9 A;  1R0J A;  1QYB A;  5AI3 A;  1IU6 A;  1YK5 A;  2RDV A;  1BFY A;  1B71 A;  1E8J A; 
#chains in the Genus database with same CATH topology
 2B5I D;  2AYJ A;  1WCM L;  1TWG L;  2R92 L;  2Y0S P;  1SMU A;  4TVM A;  5MF6 A;  1PFV A;  4AR6 A;  2LCQ A;  1RDG A;  3H9B A;  4A93 L;  1FHH A;  1R0G A;  3HOY L;  3HOZ L;  3WWN B;  2MS3 A;  2H12 A;  4Y52 L;  1K83 L;  3LPE B;  2RFK B;  1VZH A;  5C44 L;  2JI2 A;  3HOU L;  1NNQ A;  3K35 A;  2O5J D;  1TWH L;  3GTO L;  4A3D L;  3S14 L;  4A3B L;  5IYC L;  3PO3 L;  4LHN A;  3HKZ P;  3S1N L;  1IU5 A;  4U67 1;  4A3L L;  5GAG c;  1RWD A;  3P2A A;  4AI3 A;  3VPB E;  4BBR L;  1VCX A;  4X6A L;  1R9T L;  5M3M L;  4AHZ A;  1S2Z A;  3S2D L;  3PKJ A;  3ZG6 A;  1SFO L;  3S2H L;  1YUZ A;  2XJT A;  3NFP I;  2XJS A;  4AR4 A;  3S16 L;  1BQ8 A;  3KYV A;  5GAD c;  3PIP 1;  3FDJ A;  1RB9 A;  1YK4 A;  4AI1 A;  2JI1 A;  3HOV L;  1R0J A;  5AI3 A;  1IU6 A;  1PZX A;  2E2H L;  1B71 A;  1E8J A;  3HJW B;  4C2M 1;  4V19 6;  2ERS A;  3S1R L;  2QL0 A;  2NVY L;  4GS7 D;  1IW7 D;  1TWA L;  1BE7 A;  5FJ8 L;  4AHY A;  3KYU A;  3H97 A;  5IP7 L;  2WB1 P;  1B2J A;  3I4M L;  1I3Q L;  5IP9 L;  2GMG A;  3JR7 A;  3S17 L;  4POF A;  3P8B A;  4YWL A;  2PSM C;  4C3I L;  3HOX L;  5IYB L;  1Z92 B;  1PFU A;  4BY7 L;  3GTP L;  4A3M L;  3A44 A;  2APO B;  2A6E D;  2CKC A;  1RDV A;  4ME3 A;  2B63 L;  2PVE A;  1S24 A;  2V0E A;  3PO2 L;  3S15 L;  3RZD L;  3RZT A;  3MPS A;  1TWF L;  3B08 B;  2ERJ A;  1RYT A;  5EIO C;  4AR5 A;  5JVG 1;  5MFZ A;  1F4L A;  2NVX L;  1R0H A;  4AR3 A;  2BE5 D;  2R93 L;  1Y1W L;  5AI2 A;  5EIN C;  4A3G L;  3QVD A;  1LTL A;  4Y7N L;  4A3I L;  3HOW L;  1IRO A;  2KKD A;  1H7V A;  2ZIX A;  4A3K L;  1PFY A;  2K2D A;  5JVH 1;  2PPT A;  1LKP A;  3PZA A;  1BQ9 A;  5MFP A;  2C6A A;  4QIW P;  1BFY A;  3K7A L;  2A68 D;  1WJV A;  3RZO L;  5DM7 1;  5AN9 H;  2AQC A;  2V3B B;  2XJR A;  2HR5 A;  2DSX A;  4RXN A;  4B8C D;  4LHL A;  3GTM L;  2CKA A;  3MSU A;  1B2O A;  2PMZ P;  3I4N L;  4AI0 A;  1NXG A;  5C4X L;  8RXN A;  2C6B A;  1OWC A;  1OWB A;  4JAE A;  2JA6 L;  4JAG A;  3GTJ L;  5C4J L;  3WWL A;  2HVY C;  3PWF A;  3M3Y L;  3S1M L;  2R7Z L;  3M4O L;  5M5Y L;  1LKM A;  3S1Q L;  4XXB B;  2A6H D;  3RYG A;  4ZN1 B;  4YWM A;  3PKI A;  3CQZ L;  2V0F A;  4BBS L;  7RXN A;  3LWR B;  4BXX L;  2XJU A;  3SS2 A;  3MQK B;  3PL5 A;  3LWV B;  3H0G L;  1DVB A;  1P7P A;  2JA8 L;  3H9C A;  5M5W L;  5IYD L;  4WFN 1;  5M5X L;  1YUX A;  2M6P A;  4A3F L;  1I50 L;  3IU3 I;  1TWC L;  1C09 A;  1T9O A;  5DM6 1;  4G6B A;  1Y1V L;  3GTQ L;  2NYD A;  2Z3Q B;  1ZRP A;  1SMW A;  2E2J L;  1CAD A;  2M4Y A;  3GTL L;  3GTK L;  1QYB A;  1YK5 A;  3HAX C;  3LWQ B;  2XJV A;  2J9U B;  4AI2 A;  2NVT L;  2NVQ L;  3J7Y 1;  1I6H L;  2E2I L;  2M4V A;  2L0Z A;  1IRN A;  1NXE A;  2AUS B;  4JAD A;  4TPU A;  2JA5 L;  1T9P A;  1VZI A;  3FKI L;  4AYB P;  5FLM L;  3RZ6 A;  1SMM A;  4E6Y A;  4ZN3 B;  5H1S c;  4POG A;  1B13 A;  3PIO 1;  2VL6 A;  5MLC 3;  1FHM A;  2KN9 A;  1T9Q A;  2PYA A;  3H3V M;  1BRF A;  1LKO A;  2JI3 A;  1JYB A;  4A3J L;  5GAE c;  3H99 A;  4AHW A;  2JA7 L;  4BY1 L;  3GTG L;  3QQC E;  5GAH c;  1R0F A;  1R0I A;  4XGH A;  6RXN A;  1ODH A;  1QCV A;  4C3J L;  1PFW A;  2M6O A;  1QQT A;  2VUM L;  1CAA A;  3B0A B;  4UY8 1;  1DX8 A;  2A69 D;  5C3E L;  4C3H L;  3KYY A;  5IY0 A;  2EY4 E;  4K9F A;  4JAF A;  3LWO B;  4A3C L;  2YU9 L;  2CR8 A;  3LWP B;  3KYW A;  2WAQ P;  1S30 A;  5MGN A;  1VZG A;  4A3E L;  2PVX A;  1YV1 A;  5M3F L;  3J7Z 1;  5K2M E;  2XJQ A;  2XJP A;  3KYX A;  5RXN A;  4AHX A;  3LNL A;  2RDV A;  1RYQ A;  3HJY B;  2Z3R B; 
#chains in the Genus database with same CATH homology
 2XJV A;  2J9U B;  4AI2 A;  1E8J A;  2B5I D;  1WJV A;  4V19 6;  2AYJ A;  2ERS A;  2QL0 A;  3J7Y 1;  5DM7 1;  4GS7 D;  5AN9 H;  1IW7 D;  2V3B B;  1BE7 A;  2M4V A;  2XJR A;  2L0Z A;  1IRN A;  4AHY A;  3KYU A;  2HR5 A;  2DSX A;  1SMU A;  4TVM A;  1NXE A;  1B2J A;  5MF6 A;  4RXN A;  4B8C D;  4JAD A;  4TPU A;  4LHL A;  2CKA A;  4AR6 A;  1T9P A;  2GMG A;  1B2O A;  1VZI A;  3MSU A;  2LCQ A;  4AI0 A;  3RZ6 A;  1NXG A;  1RDG A;  8RXN A;  1FHH A;  2C6B A;  4POF A;  1SMM A;  3P8B A;  1OWC A;  1OWB A;  2PSM C;  4JAE A;  4YWL A;  1R0G A;  4E6Y A;  4ZN3 B;  5H1S c;  4JAG A;  4POG A;  1B13 A;  1Z92 B;  3WWL A;  3PIO 1;  2VL6 A;  3WWN B;  3PWF A;  2MS3 A;  2H12 A;  5MLC 3;  1FHM A;  2KN9 A;  3LPE B;  3A44 A;  1T9Q A;  2PYA A;  2A6E D;  2CKC A;  1RDV A;  4ME3 A;  1BRF A;  1LKO A;  1VZH A;  2PVE A;  2JI3 A;  1JYB A;  1S24 A;  5GAE c;  2V0E A;  2JI2 A;  4AHW A;  1LKM A;  3RZT A;  3MPS A;  3QQC E;  1NNQ A;  3K35 A;  4XXB B;  5GAH c;  2A6H D;  3RYG A;  4ZN1 B;  1R0F A;  4YWM A;  2O5J D;  3PKI A;  2V0F A;  3B08 B;  2ERJ A;  4XGH A;  1R0I A;  1QCV A;  1RYT A;  6RXN A;  1ODH A;  7RXN A;  5EIO C;  2XJU A;  4AR5 A;  4LHN A;  5JVG 1;  2M6O A;  3SS2 A;  1CAA A;  1IU5 A;  3B0A B;  5MFZ A;  4UY8 1;  1DX8 A;  1R0H A;  4U67 1;  1DVB A;  4AR3 A;  2BE5 D;  5GAG c;  1RWD A;  2A69 D;  3P2A A;  4AI3 A;  3KYY A;  3VPB E;  4WFN 1;  5AI2 A;  5EIN C;  5IY0 A;  1YUX A;  2M6P A;  1VCX A;  3QVD A;  4K9F A;  1LTL A;  4JAF A;  3IU3 I;  4AHZ A;  1S2Z A;  2CR8 A;  3PKJ A;  3ZG6 A;  3KYW A;  1C09 A;  1T9O A;  1S30 A;  1YUZ A;  2XJT A;  3NFP I;  1VZG A;  2XJS A;  4AR4 A;  5MGN A;  1IRO A;  1BQ8 A;  5DM6 1;  4G6B A;  3KYV A;  2PVX A;  2KKD A;  1YV1 A;  5GAD c;  2NYD A;  3PIP 1;  1H7V A;  2ZIX A;  3J7Z 1;  2Z3Q B;  1ZRP A;  1SMW A;  5K2M E;  2XJQ A;  2XJP A;  2K2D A;  3KYX A;  1RB9 A;  5JVH 1;  1YK4 A;  1CAD A;  2PPT A;  1LKP A;  2JI1 A;  3PZA A;  2M4Y A;  4AI1 A;  5RXN A;  1BQ9 A;  4AHX A;  1R0J A;  1QYB A;  5AI3 A;  5MFP A;  1IU6 A;  1YK5 A;  2C6A A;  3LNL A;  2RDV A;  1BFY A;  1RYQ A;  1B71 A;  2Z3R B;  2A68 D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...