2QLVC

Crystal structure of the heterotrimer core of the s. cerevisiae ampk homolog snf1
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
315
structure length
310
Chain Sequence
SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the heterotrimer core of Saccharomyces cerevisiae AMPK homologue SNF1.
pubmed doi rcsb
molecule keywords Carbon catabolite derepressing protein kinase
molecule tags Transferase/protein binding
source organism Saccharomyces cerevisiae
total genus 86
structure length 310
sequence length 315
chains with identical sequence F
ec nomenclature
pdb deposition date 2007-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2qlvC02
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2qlvC01
2OUXA 4ESYA 1O50A 4FRYA 2QRCE 3OCMA 4L3VA 4P1GA 2YVYA 3FV6A 4L0DA 2RIHA 4GQYA 2ZY9A 3OI8A 3KXRA 2QLVC 3KPBA 3SL7A 3LQNA 5K23C 3K2VA 3PC4A 3L2BA 2UV5A 2RIFA 4NOCA 3OCOA 4IY3A 5MMZA 4L27A 4L28A 4UUUA 5LXQA 3TE5C 5K24C 5IIPA 1YAVA 4P1OA 4IY4A 3TDHC 4PCUA 2O16A 3FHMA 2PFIA 2QR1E 2QRDE 4GQVA 3I8NA 3FNAA 1Y5HA 2EF7A 4COOA 1XKFA 2NYEA 3KPCA 3T4NC 4FXSA 3DDJA 2YZQA 1PVMA 2QH1A 3HF7A 3KH5A 2YVZA 3ORGA 4O9KA 4IY0A 3LV9A 2YZIA 4GQWA 2UV6A 2UV4A 2QREE 2YVXA 2RC3A 3K6EA 5K25C 1PBJA 3FWSA 2OOYE 2OOXE 4HG0A 3PC3A 2P9MA 2D4ZA 4IYSA 3LHHA 2NYCA 3PC2A 3L31A 4IY2A 4ESYB 3FWRA 5KS7A 3GBYA 2UV7A 3KPDA 5K22B 4DQWA 2EMQA 3LFZA
chains in the Genus database with same CATH superfamily
2OUXA 4ESYA 1O50A 4FRYA 2QRCE 3OCMA 4L3VA 4P1GA 2YVYA 3FV6A 4L0DA 2RIHA 4GQYA 2ZY9A 3OI8A 3KXRA 2QLVC 3KPBA 3SL7A 3LQNA 5K23C 3K2VA 3PC4A 3L2BA 2UV5A 2RIFA 4NOCA 3OCOA 4IY3A 5MMZA 4L27A 4L28A 4UUUA 5LXQA 3TE5C 5K24C 5IIPA 1YAVA 4P1OA 4IY4A 3TDHC 4PCUA 2O16A 3FHMA 2PFIA 2QR1E 2QRDE 4GQVA 3I8NA 2JA3A 3FNAA 1Y5HA 2EF7A 4COOA 1XKFA 2J9LA 2NYEA 3KPCA 3T4NC 4FXSA 3DDJA 2YZQA 1PVMA 2QH1A 3HF7A 3KH5A 2YVZA 3ORGA 4O9KA 4IY0A 3LV9A 2YZIA 4GQWA 2UV6A 2UV4A 2QREE 2YVXA 2RC3A 3K6EA 5K25C 1PBJA 3FWSA 2OOYE 2OOXE 4HG0A 3PC3A 2P9MA 2D4ZA 4IYSA 3LHHA 2NYCA 3PC2A 3L31A 4IY2A 4ESYB 3FWRA 5KS7A 3GBYA 2UV7A 3KPDA 5K22B 4DQWA 2EMQA 3LFZA
chains in the Genus database with same CATH topology
2OUXA 4ESYA 1O50A 4FRYA 2QRCE 3OCMA 4L3VA 4P1GA 2YVYA 3FV6A 4L0DA 2RIHA 4GQYA 2ZY9A 3OI8A 3KXRA 2QLVC 3KPBA 3SL7A 3LQNA 5K23C 3K2VA 3PC4A 3L2BA 2UV5A 2RIFA 4NOCA 3OCOA 4IY3A 5MMZA 4L27A 4L28A 4UUUA 5LXQA 3TE5C 5K24C 5IIPA 1YAVA 4P1OA 4IY4A 3TDHC 4PCUA 2O16A 3FHMA 2PFIA 2QR1E 2QRDE 4GQVA 3I8NA 2JA3A 3FNAA 1Y5HA 2EF7A 4COOA 1XKFA 2J9LA 2NYEA 3KPCA 3T4NC 4FXSA 3DDJA 2YZQA 1PVMA 2QH1A 3HF7A 3KH5A 2YVZA 3ORGA 4O9KA 4IY0A 3LV9A 2YZIA 4GQWA 2UV6A 2UV4A 2QREE 2YVXA 2RC3A 3K6EA 5K25C 1PBJA 3FWSA 2OOYE 2OOXE 4HG0A 3PC3A 2P9MA 2D4ZA 4IYSA 3LHHA 2NYCA 3PC2A 3L31A 4IY2A 4ESYB 3FWRA 5KS7A 3GBYA 2UV7A 3KPDA 5K22B 4DQWA 2EMQA 3LFZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OUX A;  4ESY A;  1O50 A;  4FRY A;  2QRC E;  3OCM A;  4L3V A;  4P1G A;  2YVY A;  3FV6 A;  4L0D A;  2RIH A;  4GQY A;  2ZY9 A;  3OI8 A;  3KXR A;  2QLV C;  3KPB A;  3SL7 A;  3LQN A;  5K23 C;  3K2V A;  3PC4 A;  3L2B A;  2UV5 A;  2RIF A;  4NOC A;  3OCO A;  4IY3 A;  5MMZ A;  4L27 A;  4L28 A;  4UUU A;  5LXQ A;  3TE5 C;  5K24 C;  5IIP A;  1YAV A;  4P1O A;  4IY4 A;  3TDH C;  4PCU A;  2O16 A;  3FHM A;  2PFI A;  2QR1 E;  2QRD E;  4GQV A;  3I8N A;  3FNA A;  1Y5H A;  2EF7 A;  4COO A;  1XKF A;  2NYE A;  3KPC A;  3T4N C;  4FXS A;  3DDJ A;  2YZQ A;  1PVM A;  2QH1 A;  3HF7 A;  3KH5 A;  2YVZ A;  3ORG A;  4O9K A;  4IY0 A;  3LV9 A;  2YZI A;  4GQW A;  2UV6 A;  2UV4 A;  2QRE E;  2YVX A;  2RC3 A;  3K6E A;  5K25 C;  1PBJ A;  3FWS A;  2OOY E;  2OOX E;  4HG0 A;  3PC3 A;  2P9M A;  2D4Z A;  4IYS A;  3LHH A;  2NYC A;  3PC2 A;  3L31 A;  4IY2 A;  4ESY B;  3FWR A;  5KS7 A;  3GBY A;  2UV7 A;  3KPD A;  5K22 B;  4DQW A;  2EMQ A;  3LFZ A; 
#chains in the Genus database with same CATH topology
 2OUX A;  4ESY A;  1O50 A;  4FRY A;  2QRC E;  3OCM A;  4L3V A;  4P1G A;  2YVY A;  3FV6 A;  4L0D A;  2RIH A;  4GQY A;  2ZY9 A;  3OI8 A;  3KXR A;  2QLV C;  3KPB A;  3SL7 A;  3LQN A;  5K23 C;  3K2V A;  3PC4 A;  3L2B A;  2UV5 A;  2RIF A;  4NOC A;  3OCO A;  4IY3 A;  5MMZ A;  4L27 A;  4L28 A;  4UUU A;  5LXQ A;  3TE5 C;  5K24 C;  5IIP A;  1YAV A;  4P1O A;  4IY4 A;  3TDH C;  4PCU A;  2O16 A;  3FHM A;  2PFI A;  2QR1 E;  2QRD E;  4GQV A;  3I8N A;  2JA3 A;  3FNA A;  1Y5H A;  2EF7 A;  4COO A;  1XKF A;  2J9L A;  2NYE A;  3KPC A;  3T4N C;  4FXS A;  3DDJ A;  2YZQ A;  1PVM A;  2QH1 A;  3HF7 A;  3KH5 A;  2YVZ A;  3ORG A;  4O9K A;  4IY0 A;  3LV9 A;  2YZI A;  4GQW A;  2UV6 A;  2UV4 A;  2QRE E;  2YVX A;  2RC3 A;  3K6E A;  5K25 C;  1PBJ A;  3FWS A;  2OOY E;  2OOX E;  4HG0 A;  3PC3 A;  2P9M A;  2D4Z A;  4IYS A;  3LHH A;  2NYC A;  3PC2 A;  3L31 A;  4IY2 A;  4ESY B;  3FWR A;  5KS7 A;  3GBY A;  2UV7 A;  3KPD A;  5K22 B;  4DQW A;  2EMQ A;  3LFZ A; 
#chains in the Genus database with same CATH homology
 2OUX A;  4ESY A;  1O50 A;  4FRY A;  2QRC E;  3OCM A;  4L3V A;  4P1G A;  2YVY A;  3FV6 A;  4L0D A;  2RIH A;  4GQY A;  2ZY9 A;  3OI8 A;  3KXR A;  2QLV C;  3KPB A;  3SL7 A;  3LQN A;  5K23 C;  3K2V A;  3PC4 A;  3L2B A;  2UV5 A;  2RIF A;  4NOC A;  3OCO A;  4IY3 A;  5MMZ A;  4L27 A;  4L28 A;  4UUU A;  5LXQ A;  3TE5 C;  5K24 C;  5IIP A;  1YAV A;  4P1O A;  4IY4 A;  3TDH C;  4PCU A;  2O16 A;  3FHM A;  2PFI A;  2QR1 E;  2QRD E;  4GQV A;  3I8N A;  2JA3 A;  3FNA A;  1Y5H A;  2EF7 A;  4COO A;  1XKF A;  2J9L A;  2NYE A;  3KPC A;  3T4N C;  4FXS A;  3DDJ A;  2YZQ A;  1PVM A;  2QH1 A;  3HF7 A;  3KH5 A;  2YVZ A;  3ORG A;  4O9K A;  4IY0 A;  3LV9 A;  2YZI A;  4GQW A;  2UV6 A;  2UV4 A;  2QRE E;  2YVX A;  2RC3 A;  3K6E A;  5K25 C;  1PBJ A;  3FWS A;  2OOY E;  2OOX E;  4HG0 A;  3PC3 A;  2P9M A;  2D4Z A;  4IYS A;  3LHH A;  2NYC A;  3PC2 A;  3L31 A;  4IY2 A;  4ESY B;  3FWR A;  5KS7 A;  3GBY A;  2UV7 A;  3KPD A;  5K22 B;  4DQW A;  2EMQ A;  3LFZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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