2QP2A

Structure of a macpf/perforin-like protein
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
502
structure length
498
Chain Sequence
KSLEQENSERDVEIRDRNYFRKLSLFDDTVIAGAEMIGTSYDVFGKYCNVGSCMNSLFDERKINASEDNFKKVTILGKTLKVPYYIDCYSVGDLKYTNASGESIESYQSNISSKSRIKGNYLFFSASLKVDFDTDSLTDFENAFSRIQYTYDLYILKSSAEALKEFLKESVKTALDKADTEEDMNDLFNTWGSHFLSGVVMGGCAQYSSSTNKYTSNLTNSFDVVAAASFAGFIGLSARTGNSFMEDIKKFRSASNIKTHAIGGDLSRFDPFGGATSADQPSAEEIAAAKKAFEDWKASVPNAPELVNFADSNPLTGIWELCSDRTQKAKLKKHFETVWAPAESAKRRVHADYIDEIIIGINNTNTPPEGYIGLKSTKDENLNSKGNICLFMHKAKYDPNIDNKDCITELKFITVRDKSPEGDWVKIPQDIYISPNQYLYLCYLPAKYSAEKAIKDIQLLCSSMILPYGYNDVLDERGERANATEDDNVHYLIYSAGW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Unknown function
molecule keywords Unknown protein
publication title A common fold mediates vertebrate defense and bacterial attack
pubmed doi rcsb
source organism Photorhabdus luminescens subsp. laumondii
total genus 155
structure length 498
sequence length 502
ec nomenclature
pdb deposition date 2007-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01823 MACPF MAC/Perforin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.50 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Vitelline Membrane Outer Layer Protein I, subunit A 2qp2A02
2QP2A 3TOWA
chains in the Genus database with same CATH superfamily
4QX0A 4R6OA 1XXRA 4AKDA 3WOCA 2GTYA 4DDNA 1TP8A 1DLCA 4R6RA 2NU5A 3R52A 3MIVA 3EB7A 2GUXA 4AKCA 5JM1A 2BN0A 1UGXA 3AQGA 1UH1A 5J4XA 5J51A 2QP2A 4D8MA 4R6NA 3R50A 1JI6A 1KUJA 4PIUA 1JOTA 2NUOA 4R6PA 3TOWA 3VY6A 2HYQA 3O44A 1WS5C 5J50A 4MQ0A 1X1VA 5J4TA 1J4UA 5AV7A 5EXGA 1J4TA 3LM1A 3P8SA 1XEZA 4QX2A 3LL1A 1VBOA 2HYRA 4AKBA 2BMYA 2BMZA 2GUEA 3LL2A 3R51A 3VY7A 3VZFA 4QX3A 3WOBA 2GUCA 3VZEA 4QX1A 1J4SA 3LKYA 1ZGRA 1KU8A 4PITA 1OUWA 4R6QA 3MIUA 1UGWC 1XXQA 1JACA 1VMOA 1W99A 3MITA 2JZ4A 1VBPA 1M26A 1WS5A 4MOAA 4ARYA 1UGWA 1TOQA 4PIKA 3LLZA 3APAA 2GUDA 2C9KA 1C3KA 3LLYA 4PIFA 4W8JA 1UH0A 1C3MA 1ZGSA 1C3NA 1UGYC 5BN6E 3LL0A 3VZGA 1WS4C 4AK4A 1I5PA 1PXDA 4GX7A 4WOGA 1CIYA 4ARXA 1UGYA 1WS4A
chains in the Genus database with same CATH topology
2QP2A 4D8MA 3TOWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QP2 A;  3TOW A; 
#chains in the Genus database with same CATH topology
 4QX0 A;  4R6O A;  1XXR A;  4AKD A;  3WOC A;  2GTY A;  4DDN A;  1TP8 A;  1DLC A;  4R6R A;  2NU5 A;  3R52 A;  3MIV A;  3EB7 A;  2GUX A;  4AKC A;  5JM1 A;  2BN0 A;  1UGX A;  3AQG A;  1UH1 A;  5J4X A;  5J51 A;  2QP2 A;  4D8M A;  4R6N A;  3R50 A;  1JI6 A;  1KUJ A;  4PIU A;  1JOT A;  2NUO A;  4R6P A;  3TOW A;  3VY6 A;  2HYQ A;  3O44 A;  1WS5 C;  5J50 A;  4MQ0 A;  1X1V A;  5J4T A;  1J4U A;  5AV7 A;  5EXG A;  1J4T A;  3LM1 A;  3P8S A;  1XEZ A;  4QX2 A;  3LL1 A;  1VBO A;  2HYR A;  4AKB A;  2BMY A;  2BMZ A;  2GUE A;  3LL2 A;  3R51 A;  3VY7 A;  3VZF A;  4QX3 A;  3WOB A;  2GUC A;  3VZE A;  4QX1 A;  1J4S A;  3LKY A;  1ZGR A;  1KU8 A;  4PIT A;  1OUW A;  4R6Q A;  3MIU A;  1UGW C;  1XXQ A;  1JAC A;  1VMO A;  1W99 A;  3MIT A;  2JZ4 A;  1VBP A;  1M26 A;  1WS5 A;  4MOA A;  4ARY A;  1UGW A;  1TOQ A;  4PIK A;  3LLZ A;  3APA A;  2GUD A;  2C9K A;  1C3K A;  3LLY A;  4PIF A;  4W8J A;  1UH0 A;  1C3M A;  1ZGS A;  1C3N A;  1UGY C;  5BN6 E;  3LL0 A;  3VZG A;  1WS4 C;  4AK4 A;  1I5P A;  1PXD A;  4GX7 A;  4WOG A;  1CIY A;  4ARX A;  1UGY A;  1WS4 A; 
#chains in the Genus database with same CATH homology
 2QP2 A;  4D8M A;  3TOW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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