2QQCA

E109q mutant of pyruvoyl-dependent arginine decarboxylase from methanococcus jannashii
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
46
structure length
46
Chain Sequence
PLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Methanocaldococcus jannaschii
publication title Structures of the N47A and E109Q mutant proteins of pyruvoyl-dependent arginine decarboxylase from Methanococcus jannaschii.
pubmed doi rcsb
molecule keywords Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (Pvl
total genus 6
structure length 46
sequence length 46
chains with identical sequence C, E, G, I, K
ec nomenclature ec 4.1.1.19: Arginine decarboxylase.
pdb deposition date 2007-07-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2qqcA00
1Y1BA 2P6AC 1IY6A 2QQCA 3HH2C 1TURA 2NU0I 1NUBA 2JXDA 1Y1CA 4OVOA 2KCXA 1TUSA 2NU3I 1R0RI 1SGDI 2GKVA 1HPTA 3SGBI 2JZMA 2M5XA 1M8BA 1TIHA 2SGQI 1TGSI 2KMPA 1PJUA 1UVGA 3QTLD 1TBRR 5JHWC 1LR8A 2GKTI 5DAEA 2OVOA 3TJQA 1LR7A 1KMAA 1Z7KB 2SGEI 2ERWA 2XRCA 2NU2I 2KMQA 2KMRA 1SGNI 1HJAI 1IY5A 2LEOA 1HDLA 2GKRI 2N71A 1CGII 1SGRI 2QQDA 1N13A 1IW4A 2WCYA 4SGBI 1CT0I 1YU6C 3B4VC 1UUCA 2SGDI 2ARPF 1OMUA 2B0UC 1OVOA 4GI3C 1M8CA 1MT1A 1PPFI 1SGYI 2BUSA 2SGPI 2KMOA 4HGUA 1DS3I 2NU1I 2SGFI 1BUSA 2NU4I 1LR9A 2N17A 3SGQI 1CT2I 1OYVI 1SGEI 2N52A 3SEKC 1CHOI 1YTPA 1SGQI 1CE3A 2F3CI 1UVFA 1CSOI 1TBQR 2JYYA 1AN1I 1OMTA 1BMOA 1PCEA 2V53A 1CT4I 1FYBA 1DS2I 1CGJI 1SGPI 1H0ZA 3OVOA
chains in the Genus database with same CATH superfamily
4L9MA 1Y1BA 2P6AC 3KY9A 3QWPA 1VDDA 2Y0MA 1IY6A 5J8FA 3TO7A 2QQCA 3HH2C 1TURA 2NU0I 5E3RA 1NUBA 1TOTA 2JXDA 2RC4A 1Y1CA 2OD1A 2V1CA 4OVOA 2KCXA 3GOXA 1TUSA 2DKVA 2NU3I 4MPIA 5HQ8A 1R0RI 1WTJA 1FY7A 1SGDI 4AMLA 1Y8FA 1Z2IA 2DB6A 1KBFA 1P9ZA 2GKVA 1K7TA 5EX0A 3TOBA 3UEYA 1FAQA 2RIJA 1HPTA 3SGBI 2JZMA 1W3SA 5FUXA 2M5XA 2K9HA 2W0TA 2X52A 3TO9A 1M8BA 1PTRA 1TIHA 2SGQI 2YQPA 3CXLA 2B8TA 2ODDA 2GVIA 5FUVA 3RU0A 1TBOA 1TGSI 2CWGA 1XX6A 2UZ3A 3OXGA 2KMPA 1MJBA 1P9GA 5EX3A 2ROWA 1U5KA 2OU2A 3QAHA 3OXLA 1X74A 1PJUA 1XA6A 1W4RA 9WGAA 1X4SA 1UVGA 3QTLD 3TO6A 1TBRR 2CWFA 5JHWC 1K7VA 1LR8A 1MJAA 2GKTI 2OVOA 2PQ8A 5DAEA 3TJQA 1LR7A 1S20A 1KMAA 1Z7KB 2SGEI 3UOEA 1NXUA 2ERWA 2XRCA 3FSYA 1PTQA 2LB7A 2NU2I 2KMQA 2KMRA 1SGNI 1HJAI 1IY5A 2LEOA 2JA1A 1WGTA 2FNFX 1HDLA 2GKRI 2N71A 3E59A 1ULNA 1XBTA 3OXFA 3VDPA 3R5AA 1CGII 1SGRI 1V1IA 1FARA 1K7UA 2QQDA 1N13A 2WGCA 3MEKA 3OL0A 1IW4A 2QQEA 3UFFA 1R79A 3UGIA 4B6DA 2OZUA 2WCYA 4SGBI 1CT0I 4E1PA 1YU6C 5E3QA 4UXJA 3R5DA 2J87A 5FUYA 4UXIA 3B4VC 1UUCA 1V1HA 4A24A 2J9RA 2N1AB 2SGDI 3E2IA 4FKDA 2ORWA 4DNCA 2ARPF 1OMUA 1ULMA 2B0UC 4UXHA 2DIPA 1OVOA 3UGDA 4JCVE 3D00A 4GI3C 1M8CA 1MT1A 2E5RA 2ENNA 2WVJA 2QQ0A 1PPFI 1SGYI 1Q9BA 2BUSA 2SGPI 2ENZA 3R5BA 2KMOA 3VE5A 2VRWB 3FC3A 1ULKA 4HGUA 7WGAA 1DS3I 2NU1I 2SGFI 1HEVA 3BJIA 4WP4A 2V1CC 3UEJA 3UGLA 2GIVA 1BUSA 2NU4I 1LR9A 2N17A 2UVOA 1CT2I 1OYVI 1SGEI 2N52A 3SEKC 3SGQI 4E1RA 5CCLA 1CHOI 1YTPA 1SGQI 1CE3A 1MJ9A 2E73A 2F3CI 3FSXA 1WGCA 1UVFA 2X3TA 2LUYA 3PDNA 1WKXA 2YUUA 1CSOI 1TBQR 1KBEA 2ELIA 1AN1I 2JYYA 2L8EA 5CCMA 1OMTA 1BMOA 1PCEA 5E3PA 2CWHA 2JW6A 3TOAA 5J8CA 3VDUA 3R5CA 2A20A 2V53A 1CT4I 2L7XA 1FYBA 1DS2I 1CGJI 1SGPI 1UHAA 2ORVA 2CJSC 2QPOA 5FUWA 1RFHA 5HI7A 1TBNA 1H0ZA 3OVOA
chains in the Genus database with same CATH topology
4L9MA 1Y1BA 2P6AC 3KY9A 3QWPA 1VDDA 1IY6A 2QQCA 3HH2C 1TURA 2NU0I 1NUBA 1TOTA 2JXDA 1Y1CA 2OD1A 2V1CA 4OVOA 2KCXA 3GOXA 1TUSA 2NU3I 5HQ8A 1R0RI 1SGDI 1Y8FA 2DB6A 1KBFA 2GKVA 5EX0A 3UEYA 1FAQA 1HPTA 3SGBI 2JZMA 1W3SA 5FUXA 2M5XA 2K9HA 2W0TA 1M8BA 1PTRA 1TIHA 2SGQI 2YQPA 3CXLA 2B8TA 2ODDA 2GVIA 5FUVA 3RU0A 1TBOA 1TGSI 2UZ3A 1XX6A 3OXGA 2KMPA 5EX3A 2ROWA 1U5KA 3OXLA 1X74A 1PJUA 1XA6A 1W4RA 1X4SA 1UVGA 3QTLD 1TBRR 5JHWC 1LR8A 2GKTI 5DAEA 2OVOA 3TJQA 1LR7A 1KMAA 1Z7KB 2SGEI 2ERWA 2XRCA 1PTQA 2NU2I 2KMQA 2KMRA 1SGNI 1HJAI 1IY5A 2LEOA 2JA1A 2FNFX 1HDLA 2GKRI 2N71A 3E59A 1XBTA 3OXFA 3VDPA 1CGII 1SGRI 1V1IA 1FARA 2QQDA 1N13A 3MEKA 3OL0A 1IW4A 2QQEA 3UFFA 1R79A 3UGIA 4B6DA 2WCYA 4SGBI 1CT0I 4E1PA 1YU6C 4UXJA 2J87A 5FUYA 4UXIA 3B4VC 1UUCA 1V1HA 4A24A 2J9RA 2N1AB 2SGDI 3E2IA 4FKDA 2ORWA 2ARPF 1OMUA 2B0UC 4UXHA 2DIPA 1OVOA 3UGDA 4JCVE 3D00A 4GI3C 1M8CA 1MT1A 2E5RA 2ENNA 2WVJA 2QQ0A 1PPFI 1SGYI 2BUSA 2SGPI 2ENZA 2KMOA 3VE5A 2VRWB 3FC3A 4HGUA 1DS3I 2NU1I 2SGFI 3BJIA 3UEJA 2V1CC 3UGLA 1BUSA 2NU4I 1LR9A 2N17A 3SGQI 1CT2I 1OYVI 1SGEI 2N52A 3SEKC 4E1RA 5CCLA 1CHOI 1YTPA 1SGQI 1CE3A 2E73A 2F3CI 1UVFA 2LUYA 3PDNA 2YUUA 1CSOI 1TBQR 1KBEA 2ELIA 1AN1I 2JYYA 2L8EA 5CCMA 1OMTA 1BMOA 1PCEA 2JW6A 3VDUA 2A20A 2V53A 1CT4I 2L7XA 1FYBA 1DS2I 1CGJI 1SGPI 5FUWA 2ORVA 2CJSC 2QPOA 1H0ZA 1RFHA 5HI7A 1TBNA 3OVOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1B A;  2P6A C;  1IY6 A;  2QQC A;  3HH2 C;  1TUR A;  2NU0 I;  1NUB A;  2JXD A;  1Y1C A;  4OVO A;  2KCX A;  1TUS A;  2NU3 I;  1R0R I;  1SGD I;  2GKV A;  1HPT A;  3SGB I;  2JZM A;  2M5X A;  1M8B A;  1TIH A;  2SGQ I;  1TGS I;  2KMP A;  1PJU A;  1UVG A;  3QTL D;  1TBR R;  5JHW C;  1LR8 A;  2GKT I;  5DAE A;  2OVO A;  3TJQ A;  1LR7 A;  1KMA A;  1Z7K B;  2SGE I;  2ERW A;  2XRC A;  2NU2 I;  2KMQ A;  2KMR A;  1SGN I;  1HJA I;  1IY5 A;  2LEO A;  1HDL A;  2GKR I;  2N71 A;  1CGI I;  1SGR I;  2QQD A;  1N13 A;  1IW4 A;  2WCY A;  4SGB I;  1CT0 I;  1YU6 C;  3B4V C;  1UUC A;  2SGD I;  2ARP F;  1OMU A;  2B0U C;  1OVO A;  4GI3 C;  1M8C A;  1MT1 A;  1PPF I;  1SGY I;  2BUS A;  2SGP I;  2KMO A;  4HGU A;  1DS3 I;  2NU1 I;  2SGF I;  1BUS A;  2NU4 I;  1LR9 A;  2N17 A;  3SGQ I;  1CT2 I;  1OYV I;  1SGE I;  2N52 A;  3SEK C;  1CHO I;  1YTP A;  1SGQ I;  1CE3 A;  2F3C I;  1UVF A;  1CSO I;  1TBQ R;  2JYY A;  1AN1 I;  1OMT A;  1BMO A;  1PCE A;  2V53 A;  1CT4 I;  1FYB A;  1DS2 I;  1CGJ I;  1SGP I;  1H0Z A;  3OVO A; 
#chains in the Genus database with same CATH topology
 4L9M A;  1Y1B A;  2P6A C;  3KY9 A;  3QWP A;  1VDD A;  2Y0M A;  1IY6 A;  5J8F A;  3TO7 A;  2QQC A;  3HH2 C;  1TUR A;  2NU0 I;  5E3R A;  1NUB A;  1TOT A;  2JXD A;  2RC4 A;  1Y1C A;  2OD1 A;  2V1C A;  4OVO A;  2KCX A;  3GOX A;  1TUS A;  2DKV A;  2NU3 I;  4MPI A;  5HQ8 A;  1R0R I;  1WTJ A;  1FY7 A;  1SGD I;  4AML A;  1Y8F A;  1Z2I A;  2DB6 A;  1KBF A;  1P9Z A;  2GKV A;  1K7T A;  5EX0 A;  3TOB A;  3UEY A;  1FAQ A;  2RIJ A;  1HPT A;  3SGB I;  2JZM A;  1W3S A;  5FUX A;  2M5X A;  2K9H A;  2W0T A;  2X52 A;  3TO9 A;  1M8B A;  1PTR A;  1TIH A;  2SGQ I;  2YQP A;  3CXL A;  2B8T A;  2ODD A;  2GVI A;  5FUV A;  3RU0 A;  1TBO A;  1TGS I;  2CWG A;  1XX6 A;  2UZ3 A;  3OXG A;  2KMP A;  1MJB A;  1P9G A;  5EX3 A;  2ROW A;  1U5K A;  2OU2 A;  3QAH A;  3OXL A;  1X74 A;  1PJU A;  1XA6 A;  1W4R A;  9WGA A;  1X4S A;  1UVG A;  3QTL D;  3TO6 A;  1TBR R;  2CWF A;  5JHW C;  1K7V A;  1LR8 A;  1MJA A;  2GKT I;  2OVO A;  2PQ8 A;  5DAE A;  3TJQ A;  1LR7 A;  1S20 A;  1KMA A;  1Z7K B;  2SGE I;  3UOE A;  1NXU A;  2ERW A;  2XRC A;  3FSY A;  1PTQ A;  2LB7 A;  2NU2 I;  2KMQ A;  2KMR A;  1SGN I;  1HJA I;  1IY5 A;  2LEO A;  2JA1 A;  1WGT A;  2FNF X;  1HDL A;  2GKR I;  2N71 A;  3E59 A;  1ULN A;  1XBT A;  3OXF A;  3VDP A;  3R5A A;  1CGI I;  1SGR I;  1V1I A;  1FAR A;  1K7U A;  2QQD A;  1N13 A;  2WGC A;  3MEK A;  3OL0 A;  1IW4 A;  2QQE A;  3UFF A;  1R79 A;  3UGI A;  4B6D A;  2OZU A;  2WCY A;  4SGB I;  1CT0 I;  4E1P A;  1YU6 C;  5E3Q A;  4UXJ A;  3R5D A;  2J87 A;  5FUY A;  4UXI A;  3B4V C;  1UUC A;  1V1H A;  4A24 A;  2J9R A;  2N1A B;  2SGD I;  3E2I A;  4FKD A;  2ORW A;  4DNC A;  2ARP F;  1OMU A;  1ULM A;  2B0U C;  4UXH A;  2DIP A;  1OVO A;  3UGD A;  4JCV E;  3D00 A;  4GI3 C;  1M8C A;  1MT1 A;  2E5R A;  2ENN A;  2WVJ A;  2QQ0 A;  1PPF I;  1SGY I;  1Q9B A;  2BUS A;  2SGP I;  2ENZ A;  3R5B A;  2KMO A;  3VE5 A;  2VRW B;  3FC3 A;  1ULK A;  4HGU A;  7WGA A;  1DS3 I;  2NU1 I;  2SGF I;  1HEV A;  3BJI A;  4WP4 A;  2V1C C;  3UEJ A;  3UGL A;  2GIV A;  1BUS A;  2NU4 I;  1LR9 A;  2N17 A;  2UVO A;  1CT2 I;  1OYV I;  1SGE I;  2N52 A;  3SEK C;  3SGQ I;  4E1R A;  5CCL A;  1CHO I;  1YTP A;  1SGQ I;  1CE3 A;  1MJ9 A;  2E73 A;  2F3C I;  3FSX A;  1WGC A;  1UVF A;  2X3T A;  2LUY A;  3PDN A;  1WKX A;  2YUU A;  1CSO I;  1TBQ R;  1KBE A;  2ELI A;  1AN1 I;  2JYY A;  2L8E A;  5CCM A;  1OMT A;  1BMO A;  1PCE A;  5E3P A;  2CWH A;  2JW6 A;  3TOA A;  5J8C A;  3VDU A;  3R5C A;  2A20 A;  2V53 A;  1CT4 I;  2L7X A;  1FYB A;  1DS2 I;  1CGJ I;  1SGP I;  1UHA A;  2ORV A;  2CJS C;  2QPO A;  5FUW A;  1RFH A;  5HI7 A;  1TBN A;  1H0Z A;  3OVO A; 
#chains in the Genus database with same CATH homology
 4L9M A;  1Y1B A;  2P6A C;  3KY9 A;  3QWP A;  1VDD A;  1IY6 A;  2QQC A;  3HH2 C;  1TUR A;  2NU0 I;  1NUB A;  1TOT A;  2JXD A;  1Y1C A;  2OD1 A;  2V1C A;  4OVO A;  2KCX A;  3GOX A;  1TUS A;  2NU3 I;  5HQ8 A;  1R0R I;  1SGD I;  1Y8F A;  2DB6 A;  1KBF A;  2GKV A;  5EX0 A;  3UEY A;  1FAQ A;  1HPT A;  3SGB I;  2JZM A;  1W3S A;  5FUX A;  2M5X A;  2K9H A;  2W0T A;  1M8B A;  1PTR A;  1TIH A;  2SGQ I;  2YQP A;  3CXL A;  2B8T A;  2ODD A;  2GVI A;  5FUV A;  3RU0 A;  1TBO A;  1TGS I;  2UZ3 A;  1XX6 A;  3OXG A;  2KMP A;  5EX3 A;  2ROW A;  1U5K A;  3OXL A;  1X74 A;  1PJU A;  1XA6 A;  1W4R A;  1X4S A;  1UVG A;  3QTL D;  1TBR R;  5JHW C;  1LR8 A;  2GKT I;  5DAE A;  2OVO A;  3TJQ A;  1LR7 A;  1KMA A;  1Z7K B;  2SGE I;  2ERW A;  2XRC A;  1PTQ A;  2NU2 I;  2KMQ A;  2KMR A;  1SGN I;  1HJA I;  1IY5 A;  2LEO A;  2JA1 A;  2FNF X;  1HDL A;  2GKR I;  2N71 A;  3E59 A;  1XBT A;  3OXF A;  3VDP A;  1CGI I;  1SGR I;  1V1I A;  1FAR A;  2QQD A;  1N13 A;  3MEK A;  3OL0 A;  1IW4 A;  2QQE A;  3UFF A;  1R79 A;  3UGI A;  4B6D A;  2WCY A;  4SGB I;  1CT0 I;  4E1P A;  1YU6 C;  4UXJ A;  2J87 A;  5FUY A;  4UXI A;  3B4V C;  1UUC A;  1V1H A;  4A24 A;  2J9R A;  2N1A B;  2SGD I;  3E2I A;  4FKD A;  2ORW A;  2ARP F;  1OMU A;  2B0U C;  4UXH A;  2DIP A;  1OVO A;  3UGD A;  4JCV E;  3D00 A;  4GI3 C;  1M8C A;  1MT1 A;  2E5R A;  2ENN A;  2WVJ A;  2QQ0 A;  1PPF I;  1SGY I;  2BUS A;  2SGP I;  2ENZ A;  2KMO A;  3VE5 A;  2VRW B;  3FC3 A;  4HGU A;  1DS3 I;  2NU1 I;  2SGF I;  3BJI A;  3UEJ A;  2V1C C;  3UGL A;  1BUS A;  2NU4 I;  1LR9 A;  2N17 A;  3SGQ I;  1CT2 I;  1OYV I;  1SGE I;  2N52 A;  3SEK C;  4E1R A;  5CCL A;  1CHO I;  1YTP A;  1SGQ I;  1CE3 A;  2E73 A;  2F3C I;  1UVF A;  2LUY A;  3PDN A;  2YUU A;  1CSO I;  1TBQ R;  1KBE A;  2ELI A;  1AN1 I;  2JYY A;  2L8E A;  5CCM A;  1OMT A;  1BMO A;  1PCE A;  2JW6 A;  3VDU A;  2A20 A;  2V53 A;  1CT4 I;  2L7X A;  1FYB A;  1DS2 I;  1CGJ I;  1SGP I;  5FUW A;  2ORV A;  2CJS C;  2QPO A;  1H0Z A;  1RFH A;  5HI7 A;  1TBN A;  3OVO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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