2QQCA

E109q mutant of pyruvoyl-dependent arginine decarboxylase from methanococcus jannashii
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
46
structure length
46
Chain Sequence
b'PLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of the N47A and E109Q mutant proteins of pyruvoyl-dependent arginine decarboxylase from Methanococcus jannaschii.
pubmed doi rcsb
molecule keywords Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (Pvl
source organism Methanocaldococcus jannaschii
molecule tags Lyase
total genus 6
structure length 46
sequence length 46
chains with identical sequence C, E, G, I, K
ec nomenclature ec 4.1.1.19: Arginine decarboxylase.
pdb deposition date 2007-07-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2qqcA00
1CT4I 3TJQA 1SGNI 4OVOA 2GKVA 2KCXA 1SGPI 1HJAI 1CSOI 2M5XA 3OVOA 2NU4I 1TBRR 2QQDA 1Y1BA 1TBQR 1CE3A 2NU0I 2KMPA 2NU3I 1OVOA 1HDLA 1Z7KB 2GKTI 1HPTA 1IW4A 1BMOA 1TGSI 2WCYA 3SEKC 2XRCA 1N13A 1IY6A 1SGYI 1TIHA 2SGQI 1CT0I 2NU1I 4GI3C 1OMTA 1R0RI 1LR7A 1SGEI 2ERWA 1PCEA 1FYBA 2NU2I 2N71A 3SGQI 1H0ZA 1IY5A 1M8BA 5DAEA 1PPFI 2LEOA 2KMQA 1UVGA 1BUSA 1KMAA 1SGQI 2JXDA 1CHOI 1CGJI 2SGFI 3QTLD 2QQCA 1AN1I 1TUSA 5JHWC 1LR9A 4HGUA 2ARPF 3HH2C 1MT1A 2GKRI 1CT2I 4SGBI 2N17A 2N52A 2JZMA 1M8CA 1YU6C 1Y1CA 2SGDI 2BUSA 2SGPI 1PJUA 1SGRI 1LR8A 1UVFA 2KMRA 1UUCA 1DS2I 2JYYA 2B0UC 2OVOA 2SGEI 1NUBA 1TURA 2KMOA 1OMUA 2F3CI 2V53A 3SGBI 3B4VC 1DS3I 1OYVI 1CGII 1SGDI 2P6AC 1YTPA
chains in the Genus database with same CATH superfamily
1UHAA 3OXFA 5E3RA 5CCLA 1CT4I 3TJQA 1SGNI 1VDDA 4OVOA 4FKDA 7WGAA 2N1AB 2GKVA 4UXIA 2KCXA 1SGPI 5J8CA 3TO6A 3VDUA 1V1HA 1HJAI 1CSOI 2GIVA 1Q9BA 2A20A 2M5XA 3OVOA 2NU4I 1W3SA 4B6DA 2QQ0A 3TOAA 1TBOA 1ULMA 1TBRR 1Y8FA 2QQDA 3VE5A 2ODDA 2UZ3A 1Y1BA 2J87A 1K7VA 2WVJA 1XBTA 1TBQR 1K7UA 1WKXA 1CE3A 1TBNA 3TO9A 2NU0I 1P9ZA 3FC3A 2KMPA 3TOBA 2NU3I 1OVOA 3R5CA 9WGAA 1HDLA 1Z7KB 2GKTI 1HPTA 2K9HA 2OD1A 2YUUA 2OU2A 1IW4A 3GOXA 2L8EA 1BMOA 1TGSI 2WCYA 3BJIA 2RC4A 5FUYA 2XRCA 3SEKC 1N13A 1U5KA 1IY6A 2CWGA 3UGLA 1SGYI 1TIHA 3UEJA 5E3QA 2V1CA 2X52A 1WGTA 4UXHA 2ELIA 5HI7A 1KBFA 2SGQI 3R5BA 1CT0I 2NU1I 4GI3C 1ULKA 2CWFA 4JCVE 3MEKA 3OXLA 4DNCA 4E1PA 1OMTA 1FAQA 2E73A 1R0RI 5J8FA 1V1IA 5HQ8A 1FY7A 1LR7A 1RFHA 1SGEI 2ERWA 1PCEA 1FYBA 2NU2I 1XA6A 2JA1A 2N71A 2LB7A 3SGQI 1ULNA 1X4SA 1H0ZA 1IY5A 2W0TA 3R5DA 1M8BA 5DAEA 1PPFI 2LEOA 1UVGA 2KMQA 3UEYA 3UFFA 2FNFX 4AMLA 5FUWA 1BUSA 1KMAA 1SGQI 2JW6A 1CHOI 1CGJI 1K7TA 2CWHA 2JXDA 2LUYA 2QQCA 2SGFI 3QTLD 5FUXA 2DKVA 1AN1I 2OZUA 3OXGA 2UVOA 1PTQA 1TUSA 2J9RA 3FSYA 2YQPA 4UXJA 3PDNA 5FUVA 5JHWC 2ORVA 3TO7A 1XX6A 1LR9A 2PQ8A 3R5AA 1S20A 2ENZA 4HGUA 3UGDA 3VDPA 2ARPF 3HH2C 2VRWB 2L7XA 1MT1A 2GKRI 1TOTA 3QAHA 3QWPA 2ROWA 1CT2I 1P9GA 4SGBI 5EX0A 5EX3A 4MPIA 2E5RA 4E1RA 1R79A 1FARA 1NXUA 2N17A 2DIPA 3UGIA 4A24A 1WGCA 2N52A 3UOEA 2X3TA 1WTJA 2JZMA 2GVIA 1PTRA 1M8CA 1Y1CA 1YU6C 3CXLA 2CJSC 3OL0A 3D00A 2ORWA 1MJ9A 2QQEA 2SGDI 1HEVA 2BUSA 2SGPI 1PJUA 3E59A 1SGRI 1LR8A 2Y0MA 1UVFA 2KMRA 1X74A 2RIJA 1Z2IA 3RU0A 2DB6A 1UUCA 1DS2I 2JYYA 2WGCA 2B0UC 2OVOA 5CCMA 2ENNA 1MJBA 4L9MA 1W4RA 2B8TA 3FSXA 2SGEI 1NUBA 1MJAA 1TURA 3E2IA 2QPOA 2V1CC 2KMOA 5E3PA 1KBEA 1OMUA 3KY9A 2F3CI 2V53A 3SGBI 3B4VC 1DS3I 4WP4A 1OYVI 1CGII 1SGDI 2P6AC 1YTPA
chains in the Genus database with same CATH topology
3OXFA 5CCLA 1CT4I 3TJQA 1SGNI 1VDDA 4OVOA 4FKDA 2N1AB 2GKVA 4UXIA 2KCXA 1SGPI 3VDUA 1V1HA 1HJAI 1CSOI 2M5XA 2A20A 3OVOA 2NU4I 1W3SA 4B6DA 2QQ0A 1TBOA 1TBRR 1Y8FA 2QQDA 3VE5A 2ODDA 2UZ3A 1Y1BA 2J87A 2WVJA 1XBTA 1TBQR 1CE3A 1TBNA 2NU0I 3FC3A 2KMPA 2NU3I 1OVOA 1HDLA 1Z7KB 2GKTI 1HPTA 2K9HA 2OD1A 2YUUA 1IW4A 3GOXA 2L8EA 1BMOA 1TGSI 2WCYA 3BJIA 5FUYA 3SEKC 2XRCA 1N13A 1U5KA 1IY6A 3UGLA 1SGYI 1TIHA 3UEJA 2V1CA 4UXHA 5HI7A 2ELIA 1KBFA 2SGQI 1CT0I 2NU1I 4GI3C 4JCVE 3MEKA 3OXLA 4E1PA 1OMTA 1FAQA 2E73A 1R0RI 1V1IA 5HQ8A 1LR7A 1RFHA 1SGEI 2ERWA 1PCEA 1FYBA 2NU2I 1XA6A 2JA1A 2N71A 3SGQI 1X4SA 1H0ZA 1IY5A 2W0TA 1M8BA 5DAEA 1PPFI 2LEOA 1UVGA 2KMQA 3UEYA 3UFFA 2FNFX 1BUSA 5FUWA 1KMAA 1SGQI 2JW6A 1CHOI 1CGJI 2JXDA 2LUYA 2SGFI 3QTLD 2QQCA 1AN1I 3OXGA 1PTQA 1TUSA 2J9RA 4UXJA 2YQPA 5FUVA 3PDNA 5JHWC 2ORVA 1XX6A 1LR9A 4HGUA 2ENZA 3UGDA 3VDPA 2ARPF 3HH2C 2VRWB 2L7XA 1MT1A 2GKRI 1TOTA 5EX0A 3QWPA 2ROWA 1CT2I 4SGBI 5FUXA 5EX3A 4E1RA 2E5RA 1R79A 1FARA 2N17A 2DIPA 3UGIA 4A24A 2N52A 2JZMA 2GVIA 1PTRA 1M8CA 1YU6C 1Y1CA 3CXLA 2CJSC 3OL0A 3D00A 2ORWA 2QQEA 2SGDI 2BUSA 2SGPI 1PJUA 3E59A 1SGRI 1LR8A 3RU0A 1UVFA 2KMRA 1X74A 2DB6A 1UUCA 1DS2I 2JYYA 2B0UC 2OVOA 5CCMA 2ENNA 4L9MA 1W4RA 2B8TA 2SGEI 1NUBA 1TURA 3E2IA 2QPOA 2V1CC 2KMOA 1KBEA 1OMUA 3KY9A 2F3CI 2V53A 3SGBI 3B4VC 1DS3I 1OYVI 1CGII 1SGDI 2P6AC 1YTPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CT4 I;  3TJQ A;  1SGN I;  4OVO A;  2GKV A;  2KCX A;  1SGP I;  1HJA I;  1CSO I;  2M5X A;  3OVO A;  2NU4 I;  1TBR R;  2QQD A;  1Y1B A;  1TBQ R;  1CE3 A;  2NU0 I;  2KMP A;  2NU3 I;  1OVO A;  1HDL A;  1Z7K B;  2GKT I;  1HPT A;  1IW4 A;  1BMO A;  1TGS I;  2WCY A;  3SEK C;  2XRC A;  1N13 A;  1IY6 A;  1SGY I;  1TIH A;  2SGQ I;  1CT0 I;  2NU1 I;  4GI3 C;  1OMT A;  1R0R I;  1LR7 A;  1SGE I;  2ERW A;  1PCE A;  1FYB A;  2NU2 I;  2N71 A;  3SGQ I;  1H0Z A;  1IY5 A;  1M8B A;  5DAE A;  1PPF I;  2LEO A;  2KMQ A;  1UVG A;  1BUS A;  1KMA A;  1SGQ I;  2JXD A;  1CHO I;  1CGJ I;  2SGF I;  3QTL D;  2QQC A;  1AN1 I;  1TUS A;  5JHW C;  1LR9 A;  4HGU A;  2ARP F;  3HH2 C;  1MT1 A;  2GKR I;  1CT2 I;  4SGB I;  2N17 A;  2N52 A;  2JZM A;  1M8C A;  1YU6 C;  1Y1C A;  2SGD I;  2BUS A;  2SGP I;  1PJU A;  1SGR I;  1LR8 A;  1UVF A;  2KMR A;  1UUC A;  1DS2 I;  2JYY A;  2B0U C;  2OVO A;  2SGE I;  1NUB A;  1TUR A;  2KMO A;  1OMU A;  2F3C I;  2V53 A;  3SGB I;  3B4V C;  1DS3 I;  1OYV I;  1CGI I;  1SGD I;  2P6A C;  1YTP A; 
#chains in the Genus database with same CATH topology
 1UHA A;  3OXF A;  5E3R A;  5CCL A;  1CT4 I;  3TJQ A;  1SGN I;  1VDD A;  4OVO A;  4FKD A;  7WGA A;  2N1A B;  2GKV A;  4UXI A;  2KCX A;  1SGP I;  5J8C A;  3TO6 A;  3VDU A;  1V1H A;  1HJA I;  1CSO I;  2GIV A;  1Q9B A;  2A20 A;  2M5X A;  3OVO A;  2NU4 I;  1W3S A;  4B6D A;  2QQ0 A;  3TOA A;  1TBO A;  1ULM A;  1TBR R;  1Y8F A;  2QQD A;  3VE5 A;  2ODD A;  2UZ3 A;  1Y1B A;  2J87 A;  1K7V A;  2WVJ A;  1XBT A;  1TBQ R;  1K7U A;  1WKX A;  1CE3 A;  1TBN A;  3TO9 A;  2NU0 I;  1P9Z A;  3FC3 A;  2KMP A;  3TOB A;  2NU3 I;  1OVO A;  3R5C A;  9WGA A;  1HDL A;  1Z7K B;  2GKT I;  1HPT A;  2K9H A;  2OD1 A;  2YUU A;  2OU2 A;  1IW4 A;  3GOX A;  2L8E A;  1BMO A;  1TGS I;  2WCY A;  3BJI A;  2RC4 A;  5FUY A;  2XRC A;  3SEK C;  1N13 A;  1U5K A;  1IY6 A;  2CWG A;  3UGL A;  1SGY I;  1TIH A;  3UEJ A;  5E3Q A;  2V1C A;  2X52 A;  1WGT A;  4UXH A;  2ELI A;  5HI7 A;  1KBF A;  2SGQ I;  3R5B A;  1CT0 I;  2NU1 I;  4GI3 C;  1ULK A;  2CWF A;  4JCV E;  3MEK A;  3OXL A;  4DNC A;  4E1P A;  1OMT A;  1FAQ A;  2E73 A;  1R0R I;  5J8F A;  1V1I A;  5HQ8 A;  1FY7 A;  1LR7 A;  1RFH A;  1SGE I;  2ERW A;  1PCE A;  1FYB A;  2NU2 I;  1XA6 A;  2JA1 A;  2N71 A;  2LB7 A;  3SGQ I;  1ULN A;  1X4S A;  1H0Z A;  1IY5 A;  2W0T A;  3R5D A;  1M8B A;  5DAE A;  1PPF I;  2LEO A;  1UVG A;  2KMQ A;  3UEY A;  3UFF A;  2FNF X;  4AML A;  5FUW A;  1BUS A;  1KMA A;  1SGQ I;  2JW6 A;  1CHO I;  1CGJ I;  1K7T A;  2CWH A;  2JXD A;  2LUY A;  2QQC A;  2SGF I;  3QTL D;  5FUX A;  2DKV A;  1AN1 I;  2OZU A;  3OXG A;  2UVO A;  1PTQ A;  1TUS A;  2J9R A;  3FSY A;  2YQP A;  4UXJ A;  3PDN A;  5FUV A;  5JHW C;  2ORV A;  3TO7 A;  1XX6 A;  1LR9 A;  2PQ8 A;  3R5A A;  1S20 A;  2ENZ A;  4HGU A;  3UGD A;  3VDP A;  2ARP F;  3HH2 C;  2VRW B;  2L7X A;  1MT1 A;  2GKR I;  1TOT A;  3QAH A;  3QWP A;  2ROW A;  1CT2 I;  1P9G A;  4SGB I;  5EX0 A;  5EX3 A;  4MPI A;  2E5R A;  4E1R A;  1R79 A;  1FAR A;  1NXU A;  2N17 A;  2DIP A;  3UGI A;  4A24 A;  1WGC A;  2N52 A;  3UOE A;  2X3T A;  1WTJ A;  2JZM A;  2GVI A;  1PTR A;  1M8C A;  1Y1C A;  1YU6 C;  3CXL A;  2CJS C;  3OL0 A;  3D00 A;  2ORW A;  1MJ9 A;  2QQE A;  2SGD I;  1HEV A;  2BUS A;  2SGP I;  1PJU A;  3E59 A;  1SGR I;  1LR8 A;  2Y0M A;  1UVF A;  2KMR A;  1X74 A;  2RIJ A;  1Z2I A;  3RU0 A;  2DB6 A;  1UUC A;  1DS2 I;  2JYY A;  2WGC A;  2B0U C;  2OVO A;  5CCM A;  2ENN A;  1MJB A;  4L9M A;  1W4R A;  2B8T A;  3FSX A;  2SGE I;  1NUB A;  1MJA A;  1TUR A;  3E2I A;  2QPO A;  2V1C C;  2KMO A;  5E3P A;  1KBE A;  1OMU A;  3KY9 A;  2F3C I;  2V53 A;  3SGB I;  3B4V C;  1DS3 I;  4WP4 A;  1OYV I;  1CGI I;  1SGD I;  2P6A C;  1YTP A; 
#chains in the Genus database with same CATH homology
 3OXF A;  5CCL A;  1CT4 I;  3TJQ A;  1SGN I;  1VDD A;  4OVO A;  4FKD A;  2N1A B;  2GKV A;  4UXI A;  2KCX A;  1SGP I;  3VDU A;  1V1H A;  1HJA I;  1CSO I;  2M5X A;  2A20 A;  3OVO A;  2NU4 I;  1W3S A;  4B6D A;  2QQ0 A;  1TBO A;  1TBR R;  1Y8F A;  2QQD A;  3VE5 A;  2ODD A;  2UZ3 A;  1Y1B A;  2J87 A;  2WVJ A;  1XBT A;  1TBQ R;  1CE3 A;  1TBN A;  2NU0 I;  3FC3 A;  2KMP A;  2NU3 I;  1OVO A;  1HDL A;  1Z7K B;  2GKT I;  1HPT A;  2K9H A;  2OD1 A;  2YUU A;  1IW4 A;  3GOX A;  2L8E A;  1BMO A;  1TGS I;  2WCY A;  3BJI A;  5FUY A;  3SEK C;  2XRC A;  1N13 A;  1U5K A;  1IY6 A;  3UGL A;  1SGY I;  1TIH A;  3UEJ A;  2V1C A;  4UXH A;  5HI7 A;  2ELI A;  1KBF A;  2SGQ I;  1CT0 I;  2NU1 I;  4GI3 C;  4JCV E;  3MEK A;  3OXL A;  4E1P A;  1OMT A;  1FAQ A;  2E73 A;  1R0R I;  1V1I A;  5HQ8 A;  1LR7 A;  1RFH A;  1SGE I;  2ERW A;  1PCE A;  1FYB A;  2NU2 I;  1XA6 A;  2JA1 A;  2N71 A;  3SGQ I;  1X4S A;  1H0Z A;  1IY5 A;  2W0T A;  1M8B A;  5DAE A;  1PPF I;  2LEO A;  1UVG A;  2KMQ A;  3UEY A;  3UFF A;  2FNF X;  1BUS A;  5FUW A;  1KMA A;  1SGQ I;  2JW6 A;  1CHO I;  1CGJ I;  2JXD A;  2LUY A;  2SGF I;  3QTL D;  2QQC A;  1AN1 I;  3OXG A;  1PTQ A;  1TUS A;  2J9R A;  4UXJ A;  2YQP A;  5FUV A;  3PDN A;  5JHW C;  2ORV A;  1XX6 A;  1LR9 A;  4HGU A;  2ENZ A;  3UGD A;  3VDP A;  2ARP F;  3HH2 C;  2VRW B;  2L7X A;  1MT1 A;  2GKR I;  1TOT A;  5EX0 A;  3QWP A;  2ROW A;  1CT2 I;  4SGB I;  5FUX A;  5EX3 A;  4E1R A;  2E5R A;  1R79 A;  1FAR A;  2N17 A;  2DIP A;  3UGI A;  4A24 A;  2N52 A;  2JZM A;  2GVI A;  1PTR A;  1M8C A;  1YU6 C;  1Y1C A;  3CXL A;  2CJS C;  3OL0 A;  3D00 A;  2ORW A;  2QQE A;  2SGD I;  2BUS A;  2SGP I;  1PJU A;  3E59 A;  1SGR I;  1LR8 A;  3RU0 A;  1UVF A;  2KMR A;  1X74 A;  2DB6 A;  1UUC A;  1DS2 I;  2JYY A;  2B0U C;  2OVO A;  5CCM A;  2ENN A;  4L9M A;  1W4R A;  2B8T A;  2SGE I;  1NUB A;  1TUR A;  3E2I A;  2QPO A;  2V1C C;  2KMO A;  1KBE A;  1OMU A;  3KY9 A;  2F3C I;  2V53 A;  3SGB I;  3B4V C;  1DS3 I;  1OYV I;  1CGI I;  1SGD I;  2P6A C;  1YTP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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