The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
107
|
sequence length |
484
|
structure length |
484
|
Chain Sequence |
QSIDPSEGAVGWFYKYMDPAGAVESGKALGEFSKVPDGLLRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQADDN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Evolution in action: N and C termini of subunits in related T = 4 viruses exchange roles as molecular switches.
pubmed doi rcsb |
| molecule tags |
Virus
|
| molecule keywords |
Large Capsid protein
|
| total genus |
107
|
| structure length |
484
|
| sequence length |
484
|
| chains with identical sequence |
C, E, G
|
| ec nomenclature | |
| pdb deposition date | 2007-07-26 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | V-type ATP synthase subunit C fold | V-type ATP synthase subunit C fold | ||
| Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
| Alpha Beta | Roll | Thiol Ester Dehydrase; Chain A | Thiol Ester Dehydrase; Chain A |
