2QRDA

Crystal structure of the adenylate sensor from amp-activated protein kinase in complex with adp and atp
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
127
structure length
114
Chain Sequence
NKWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIYSKSSFPFLDLCAMLVCKLFSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Schizosaccharomyces pombe
publication title Structural Insight into AMPK Regulation: ADP Comes into Play.
pubmed doi rcsb
molecule keywords SNF1-like protein kinase ssp2
total genus 29
structure length 114
sequence length 127
chains with identical sequence C
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2007-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16579 AdenylateSensor Adenylate sensor of SNF1-like protein kinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 2qrdA00
2ZFDB 2EHBD 2QRCA 4EAJA 2V92A 4EAKA 2OOXA 3TE5A 3TDHA 2QRDA 4EAGA 2Y8LA 3OSEA 2V8QA 2YA3A 4CFFA 4EAIA 3T4NA 2V9JA 2QREA 2OOYA 2QLVA 1UL7A 4EALA 2QR1A 1V5SA 2Y8QA
chains in the Genus database with same CATH superfamily
2ZFDB 3DPUA 1TUOA 1JFIC 2HZMA 2IV9A 2QRCA 3CWAA 3CW7A 1YQMA 5AN4A 3OC3C 3PDKA 3VN5A 3TDHA 2D0CA 1QNCA 2Z8UA 3I0WA 2QRDA 4ROEB 2H4LX 2HL8A 1PVSA 1QN8A 2HZSA 3OSEA 1M3HA 2H5AX 4D7RA 1QTPA 4HJHA 2V9JA 2G30A 2JHJA 5JMVD 3OH6A 1YQRA 4WXAA 1J3MA 5KL0A 2FGTA 1D3UA 1EUVA 1VOKA 1UT7A 5IYCP 1PZDA 1N39A 1CDWA 1YTBA 3H1ZA 2JHNA 2XHIA 2YH5A 1NVPA 4EJYA 3RPJA 2NWVA 1HU0A 4EJZA 4Q11A 1B9KA 2FUVA 2Y8QA 1PCZA 2EHBD 2F7LA 1LXTA 3F10A 4PY5A 3I0XA 1QN6A 2NOHA 2V92A 2JPIA 1QN5A 5HSHA 1E42A 2PWWA 1DIZA 4RODB 1UT4A 2JOIA 2HL9A 3CVSA 2Y8LA 1VTLE 1FN7A 2V8QA 1KO9A 1TBPA 4WZSD 3PMGA 1JDYA 3UW2A 1KYFA 1C47A 2QREA 4BJUA 1YQKA 2FKMX 3CVTA 4C7PA 3OSTA 2OOYA 4WX8A 1KY6A 3HS8A 1R4XA 1K2YX 2NVMA 5IYBP 1TBAB 2Z0FA 1KY7A 1PCMX 1UL7A 2FKFA 3CWSA 4EALA 1QNBA 2NLVA 3EAYA 1YTFA 1LWWA 1M5Q1 2NOFA 5JN5A 3OH9A 4I8OA 1QN7A 1T6AA 3D7QA 3I3WA 2O3OA 1C9BB 4EAKA 2NOIA 4TPSA 3CWTA 1WQAA 1TGHA 3HS9A 2IV8A 1KYDA 3KRMA 1W80A 3RSMA 4CFFA 4EAIA 3EIKA 1KFIA 4B0AA 1N3CA 2MZ8A 3ENCA 1QNAA 2D0AA 1LWVA 1P5GX 2DKDA 3KTUA 4IL8A 3OSMA 4DULA 1VTOA 2QLVA 3IH7A 1N3AA 4QG5A 5BMPA 1KYUA 1AISA 1QNEA 1Q9UA 1LWYA 3OLPA 3DPTA 2D0BA 4D7QA 4ROCB 1M3QA 1RM1A 2R5XA 3D4VA 1EBMA 1VOLB 2NOLA 3ULXA 4MRQA 4EAJA 1XSZA 1MP9A 3N89A 5EPCA 1NH2A 2OOXA 3TE5A 3NA5A 1YQLA 1QN3A 1QTSA 2NOEA 4EAGA 1WJWA 1QN4A 3ENOC 3C04A 1P5DX 2YA3A 1QN9A 2MJ7A 1K35A 1MPGA 1VKLA 2HKPA 3SNSA 3T4NA 3OGDA 1C4GA 5BMNA 3CWUA 1NGMA 3OCIA 5F9CA 2VJ0A 2NOZA 2LAEA 3BKQX 2DKCA 1KFQA 3ASMA 5IYDP 1PCJX 2NOBA 2DKAA 2QR1A 3F0ZA 1V5SA 2I5WA
chains in the Genus database with same CATH topology
2ZFDB 2EHBD 2QRCA 4EAJA 2V92A 4EAKA 2OOXA 3TE5A 3TDHA 2QRDA 4EAGA 2Y8LA 3OSEA 2V8QA 2YA3A 4CFFA 4EAIA 3T4NA 2V9JA 2QREA 2OOYA 2QLVA 1UL7A 4EALA 2QR1A 1V5SA 2Y8QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZFD B;  2EHB D;  2QRC A;  4EAJ A;  2V92 A;  4EAK A;  2OOX A;  3TE5 A;  3TDH A;  2QRD A;  4EAG A;  2Y8L A;  3OSE A;  2V8Q A;  2YA3 A;  4CFF A;  4EAI A;  3T4N A;  2V9J A;  2QRE A;  2OOY A;  2QLV A;  1UL7 A;  4EAL A;  2QR1 A;  1V5S A;  2Y8Q A; 
#chains in the Genus database with same CATH topology
 2ZFD B;  3DPU A;  1TUO A;  1JFI C;  2HZM A;  2IV9 A;  2QRC A;  3CWA A;  3CW7 A;  1YQM A;  5AN4 A;  3OC3 C;  3PDK A;  3VN5 A;  3TDH A;  2D0C A;  1QNC A;  2Z8U A;  3I0W A;  2QRD A;  4ROE B;  2H4L X;  2HL8 A;  1PVS A;  1QN8 A;  2HZS A;  3OSE A;  1M3H A;  2H5A X;  4D7R A;  1QTP A;  4HJH A;  2V9J A;  2G30 A;  2JHJ A;  5JMV D;  3OH6 A;  1YQR A;  4WXA A;  1J3M A;  5KL0 A;  2FGT A;  1D3U A;  1EUV A;  1VOK A;  1UT7 A;  5IYC P;  1PZD A;  1N39 A;  1CDW A;  1YTB A;  3H1Z A;  2JHN A;  2XHI A;  2YH5 A;  1NVP A;  4EJY A;  3RPJ A;  2NWV A;  1HU0 A;  4EJZ A;  4Q11 A;  1B9K A;  2FUV A;  2Y8Q A;  1PCZ A;  2EHB D;  2F7L A;  1LXT A;  3F10 A;  4PY5 A;  3I0X A;  1QN6 A;  2NOH A;  2V92 A;  2JPI A;  1QN5 A;  5HSH A;  1E42 A;  2PWW A;  1DIZ A;  4ROD B;  1UT4 A;  2JOI A;  2HL9 A;  3CVS A;  2Y8L A;  1VTL E;  1FN7 A;  2V8Q A;  1KO9 A;  1TBP A;  4WZS D;  3PMG A;  1JDY A;  3UW2 A;  1KYF A;  1C47 A;  2QRE A;  4BJU A;  1YQK A;  2FKM X;  3CVT A;  4C7P A;  3OST A;  2OOY A;  4WX8 A;  1KY6 A;  3HS8 A;  1R4X A;  1K2Y X;  2NVM A;  5IYB P;  1TBA B;  2Z0F A;  1KY7 A;  1PCM X;  1UL7 A;  2FKF A;  3CWS A;  4EAL A;  1QNB A;  2NLV A;  3EAY A;  1YTF A;  1LWW A;  1M5Q 1;  2NOF A;  5JN5 A;  3OH9 A;  4I8O A;  1QN7 A;  1T6A A;  3D7Q A;  3I3W A;  2O3O A;  1C9B B;  4EAK A;  2NOI A;  4TPS A;  3CWT A;  1WQA A;  1TGH A;  3HS9 A;  2IV8 A;  1KYD A;  3KRM A;  1W80 A;  3RSM A;  4CFF A;  4EAI A;  3EIK A;  1KFI A;  4B0A A;  1N3C A;  2MZ8 A;  3ENC A;  1QNA A;  2D0A A;  1LWV A;  1P5G X;  2DKD A;  3KTU A;  4IL8 A;  3OSM A;  4DUL A;  1VTO A;  2QLV A;  3IH7 A;  1N3A A;  4QG5 A;  5BMP A;  1KYU A;  1AIS A;  1QNE A;  1Q9U A;  1LWY A;  3OLP A;  3DPT A;  2D0B A;  4D7Q A;  4ROC B;  1M3Q A;  1RM1 A;  2R5X A;  3D4V A;  1EBM A;  1VOL B;  2NOL A;  3ULX A;  4MRQ A;  4EAJ A;  1XSZ A;  1MP9 A;  3N89 A;  5EPC A;  1NH2 A;  2OOX A;  3TE5 A;  3NA5 A;  1YQL A;  1QN3 A;  1QTS A;  2NOE A;  4EAG A;  1WJW A;  1QN4 A;  3ENO C;  3C04 A;  1P5D X;  2YA3 A;  1QN9 A;  2MJ7 A;  1K35 A;  1MPG A;  1VKL A;  2HKP A;  3SNS A;  3T4N A;  3OGD A;  1C4G A;  5BMN A;  3CWU A;  1NGM A;  3OCI A;  5F9C A;  2VJ0 A;  2NOZ A;  2LAE A;  3BKQ X;  2DKC A;  1KFQ A;  3ASM A;  5IYD P;  1PCJ X;  2NOB A;  2DKA A;  2QR1 A;  3F0Z A;  1V5S A;  2I5W A; 
#chains in the Genus database with same CATH homology
 2ZFD B;  2EHB D;  2QRC A;  4EAJ A;  2V92 A;  4EAK A;  2OOX A;  3TE5 A;  3TDH A;  2QRD A;  4EAG A;  2Y8L A;  3OSE A;  2V8Q A;  2YA3 A;  4CFF A;  4EAI A;  3T4N A;  2V9J A;  2QRE A;  2OOY A;  2QLV A;  1UL7 A;  4EAL A;  2QR1 A;  1V5S A;  2Y8Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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