2QRDA

Crystal structure of the adenylate sensor from amp-activated protein kinase in complex with adp and atp
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
127
structure length
114
Chain Sequence
NKWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIYSKSSFPFLDLCAMLVCKLFSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Insight into AMPK Regulation: ADP Comes into Play.
pubmed doi rcsb
molecule keywords SNF1-like protein kinase ssp2
source organism Schizosaccharomyces pombe
molecule tags Transferase
total genus 29
structure length 114
sequence length 127
chains with identical sequence C
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2007-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16579 AdenylateSensor Adenylate sensor of SNF1-like protein kinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 2qrdA00
3TE5A 2OOXA 2EHBD 4EAJA 4EAKA 2V8QA 2V9JA 2Y8QA 2YA3A 1UL7A 1V5SA 3OSEA 3T4NA 4EALA 2ZFDB 2OOYA 2Y8LA 2QRCA 2QLVA 3TDHA 4EAGA 2QR1A 2QRDA 4EAIA 4CFFA 2V92A 2QREA
chains in the Genus database with same CATH superfamily
2DKAA 1QNCA 3RPJA 3BKQX 3OGDA 2FKFA 1N39A 3C04A 1UT4A 4EAKA 3OH9A 2Y8QA 1M3HA 1JDYA 1T6AA 2Z8UA 2NOEA 2FKMX 1KY6A 1KYFA 3HS9A 4D7RA 1TUOA 2HKPA 3D7QA 3F0ZA 3OSEA 1TGHA 2D0AA 4B0AA 3CVTA 1QN7A 2ZFDB 1XSZA 2OOYA 4WXAA 4HJHA 3PMGA 1KY7A 1PCZA 3I3WA 4D7QA 1N3AA 4QG5A 3D4VA 5KL0A 1QN4A 1QNEA 3TDHA 5JN5A 4I8OA 1YTBA 2R5XA 3N89A 4EAIA 4WZSD 3DPUA 2H5AX 1P5GX 2JOIA 2EHBD 1MPGA 5HSHA 2O3OA 3HS8A 4ROCB 4EJZA 2V9JA 2FGTA 5BMPA 1YQKA 2XHIA 1PVSA 1YQRA 2YA3A 1C4GA 1C47A 1VTLE 5IYDP 1VKLA 1QN6A 3F10A 1QNBA 1R4XA 5IYCP 2MJ7A 3OCIA 3I0WA 1TBAB 5F9CA 4EALA 2JPIA 5IYBP 1K2YX 1LXTA 1M5Q1 1KYDA 3OLPA 3SNSA 1QN3A 1WJWA 1PZDA 2QLVA 3CVSA 1QNAA 3KTUA 2DKCA 2LAEA 2NOLA 2QRDA 2DKDA 1UT7A 4MRQA 4CFFA 1D3UA 2OOXA 4BJUA 5BMNA 3CW7A 2G30A 2V8QA 1QTPA 1RM1A 1P5DX 1E42A 2JHNA 3VN5A 1LWYA 5EPCA 1W80A 2PWWA 1QN9A 3CWTA 1UL7A 1NH2A 1WQAA 1NGMA 1AISA 2NVMA 2I5WA 4IL8A 1PCMX 3KRMA 3CWSA 2Y8LA 1LWWA 3EAYA 1EBMA 4WX8A 2FUVA 4EJYA 2NOIA 1KO9A 1EUVA 1Q9UA 3ULXA 1VTOA 1LWVA 1QTSA 2NWVA 2D0CA 4EAGA 1VOKA 2QR1A 1K35A 3ASMA 2NOHA 2YH5A 1M3QA 1J3MA 3DPTA 2V92A 2QREA 3OC3C 1TBPA 3TE5A 1N3CA 1DIZA 4EAJA 4ROEB 3IH7A 2HL9A 3OSMA 2Z0FA 1JFIC 1YQLA 1QN8A 3ENCA 2NOBA 4Q11A 4PY5A 3CWUA 1KFIA 3CWAA 1MP9A 2NOZA 4DULA 1FN7A 5JMVD 2HZMA 3EIKA 4RODB 3ENOC 1KYUA 3H1ZA 3NA5A 1C9BB 1V5SA 1YQMA 1YTFA 1QN5A 3UW2A 1NVPA 2NOFA 5AN4A 1PCJX 2HZSA 3RSMA 3T4NA 2IV9A 2H4LX 1HU0A 2F7LA 1KFQA 2QRCA 2D0BA 2JHJA 4TPSA 2VJ0A 3PDKA 2NLVA 4C7PA 2HL8A 1CDWA 1B9KA 1VOLB 2IV8A 2MZ8A 3I0XA 3OH6A 3OSTA
chains in the Genus database with same CATH topology
3TE5A 2OOXA 2EHBD 4EAJA 4EAKA 2V8QA 2V9JA 2Y8QA 2YA3A 1UL7A 1V5SA 3OSEA 3T4NA 4EALA 2ZFDB 2OOYA 2Y8LA 2QRCA 2QLVA 3TDHA 4EAGA 2QR1A 2QRDA 4EAIA 4CFFA 2V92A 2QREA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TE5 A;  2OOX A;  2EHB D;  4EAJ A;  4EAK A;  2V8Q A;  2V9J A;  2Y8Q A;  2YA3 A;  1UL7 A;  1V5S A;  3OSE A;  3T4N A;  4EAL A;  2ZFD B;  2OOY A;  2Y8L A;  2QRC A;  2QLV A;  3TDH A;  4EAG A;  2QR1 A;  2QRD A;  4EAI A;  4CFF A;  2V92 A;  2QRE A; 
#chains in the Genus database with same CATH topology
 2DKA A;  1QNC A;  3RPJ A;  3BKQ X;  3OGD A;  2FKF A;  1N39 A;  3C04 A;  1UT4 A;  4EAK A;  3OH9 A;  2Y8Q A;  1M3H A;  1JDY A;  1T6A A;  2Z8U A;  2NOE A;  2FKM X;  1KY6 A;  1KYF A;  3HS9 A;  4D7R A;  1TUO A;  2HKP A;  3D7Q A;  3F0Z A;  3OSE A;  1TGH A;  2D0A A;  4B0A A;  3CVT A;  1QN7 A;  2ZFD B;  1XSZ A;  2OOY A;  4WXA A;  4HJH A;  3PMG A;  1KY7 A;  1PCZ A;  3I3W A;  4D7Q A;  1N3A A;  4QG5 A;  3D4V A;  5KL0 A;  1QN4 A;  1QNE A;  3TDH A;  5JN5 A;  4I8O A;  1YTB A;  2R5X A;  3N89 A;  4EAI A;  4WZS D;  3DPU A;  2H5A X;  1P5G X;  2JOI A;  2EHB D;  1MPG A;  5HSH A;  2O3O A;  3HS8 A;  4ROC B;  4EJZ A;  2V9J A;  2FGT A;  5BMP A;  1YQK A;  2XHI A;  1PVS A;  1YQR A;  2YA3 A;  1C4G A;  1C47 A;  1VTL E;  5IYD P;  1VKL A;  1QN6 A;  3F10 A;  1QNB A;  1R4X A;  5IYC P;  2MJ7 A;  3OCI A;  3I0W A;  1TBA B;  5F9C A;  4EAL A;  2JPI A;  5IYB P;  1K2Y X;  1LXT A;  1M5Q 1;  1KYD A;  3OLP A;  3SNS A;  1QN3 A;  1WJW A;  1PZD A;  2QLV A;  3CVS A;  1QNA A;  3KTU A;  2DKC A;  2LAE A;  2NOL A;  2QRD A;  2DKD A;  1UT7 A;  4MRQ A;  4CFF A;  1D3U A;  2OOX A;  4BJU A;  5BMN A;  3CW7 A;  2G30 A;  2V8Q A;  1QTP A;  1RM1 A;  1P5D X;  1E42 A;  2JHN A;  3VN5 A;  1LWY A;  5EPC A;  1W80 A;  2PWW A;  1QN9 A;  3CWT A;  1UL7 A;  1NH2 A;  1WQA A;  1NGM A;  1AIS A;  2NVM A;  2I5W A;  4IL8 A;  1PCM X;  3KRM A;  3CWS A;  2Y8L A;  1LWW A;  3EAY A;  1EBM A;  4WX8 A;  2FUV A;  4EJY A;  2NOI A;  1KO9 A;  1EUV A;  1Q9U A;  3ULX A;  1VTO A;  1LWV A;  1QTS A;  2NWV A;  2D0C A;  4EAG A;  1VOK A;  2QR1 A;  1K35 A;  3ASM A;  2NOH A;  2YH5 A;  1M3Q A;  1J3M A;  3DPT A;  2V92 A;  2QRE A;  3OC3 C;  1TBP A;  3TE5 A;  1N3C A;  1DIZ A;  4EAJ A;  4ROE B;  3IH7 A;  2HL9 A;  3OSM A;  2Z0F A;  1JFI C;  1YQL A;  1QN8 A;  3ENC A;  2NOB A;  4Q11 A;  4PY5 A;  3CWU A;  1KFI A;  3CWA A;  1MP9 A;  2NOZ A;  4DUL A;  1FN7 A;  5JMV D;  2HZM A;  3EIK A;  4ROD B;  3ENO C;  1KYU A;  3H1Z A;  3NA5 A;  1C9B B;  1V5S A;  1YQM A;  1YTF A;  1QN5 A;  3UW2 A;  1NVP A;  2NOF A;  5AN4 A;  1PCJ X;  2HZS A;  3RSM A;  3T4N A;  2IV9 A;  2H4L X;  1HU0 A;  2F7L A;  1KFQ A;  2QRC A;  2D0B A;  2JHJ A;  4TPS A;  2VJ0 A;  3PDK A;  2NLV A;  4C7P A;  2HL8 A;  1CDW A;  1B9K A;  1VOL B;  2IV8 A;  2MZ8 A;  3I0X A;  3OH6 A;  3OST A; 
#chains in the Genus database with same CATH homology
 3TE5 A;  2OOX A;  2EHB D;  4EAJ A;  4EAK A;  2V8Q A;  2V9J A;  2Y8Q A;  2YA3 A;  1UL7 A;  1V5S A;  3OSE A;  3T4N A;  4EAL A;  2ZFD B;  2OOY A;  2Y8L A;  2QRC A;  2QLV A;  3TDH A;  4EAG A;  2QR1 A;  2QRD A;  4EAI A;  4CFF A;  2V92 A;  2QRE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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