2QVEA

Crystal structure of sgtam bound to mechanism based inhibitor
Total Genus 208
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
208
sequence length
526
structure length
525
Chain Sequence
PVSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGDLAPLSHVASTLIGEGYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSGDPGLHSGFAGAQYPATALVAENRTIGPASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVDRYMADDIELVADALSRGEFLRAIARETDIQLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Streptomyces globisporus
publication title Design and characterization of mechanism-based inhibitors for the tyrosine aminomutase SgTAM
pubmed doi rcsb
molecule keywords Tyrosine Aminomutase
total genus 208
structure length 525
sequence length 526
chains with identical sequence B
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2007-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2qveA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2qveA02
4NSLA 3OCEA 2RJSA 4FLCA 1FUPA 3RD8A 3BHGA 4ADMA 3KDYA 1U16A 3C8TA 1YFEA 5HW2A 3CZOA 3KDZA 1EB4A 1DCNA 1TJWA 3R6VA 1RE5A 2PTRA 2QVEA 1FUQA 1C3UA 1FURA 4HGVA 1TJVA 4C5RA 1I0AA 5EYVA 1HY0A 4C6GA 4C5SA 1GKJA 1JSWA 2X75A 1AUWA 2O78A 2O7DA 2NYNA 5EYTA 1GK2A 3NO9A 1B8FA 4BAAA 4BABA 2O7FA 1U15A 1KQ7A 1TJUA 4APAA 2J91A 2PTQA 2VD6A 3UNVA 2O7BA 1T6JA 1C3CA 1K7WA 3R6YA 2O7EA 4CQ5A 1DOFA 4MX2A 3TV2A 1T6PA 1Y2MA 1HY1A 3E04A 1W27A 3R6QA 2HVGA 2NYFA 4ADLA 2E9FA 1GKMA 2OHYA 5D6BA 3OCFA 4V2QA 1XWOA 2O6YA 2PFMA 1K62A 4V2RA 2PTSA 4APBA 1VDKA 1TJ7A 4FFXA 2QGAB 4EFCA 3GTDA 4C5UA 3RRPA 5F92A 2YIIA 3GZHA 1Q5NA 2FUSA 4EEIA 1FUOA 2RJRA 1YISA 1GK3A 3QBPA 5F91A 1YFMA 3NZ4A 4NLEA 1J3UA
chains in the Genus database with same CATH superfamily
4NSLA 3OCEA 2RJSA 4FLCA 1FUPA 3RD8A 3BHGA 4ADMA 3KDYA 1U16A 1XMDA 3C8TA 1YFEA 5HW2A 3CZOA 3KDZA 5M0JA 1EB4A 1DCNA 1TJWA 3R6VA 3CRW1 1RE5A 2PTRA 2QVEA 1FUQA 1C3UA 1FURA 4HGVA 1TJVA 4C5RA 1I0AA 5EYVA 1HY0A 2VL7A 4C6GA 4C5SA 1GKJA 1JSWA 2X75A 1AUWA 2O78A 2O7DA 2NYNA 5EYTA 1GK2A 1XL7A 3NO9A 1B8FA 4BAAA 4BABA 2O7FA 1XLYA 1U15A 1KQ7A 1TJUA 4APAA 2J91A 2FELA 2PTQA 2VD6A 3UNVA 2O7BA 1T6JA 1C3CA 1K7WA 2VSFA 2O7EA 3R6YA 1DOFA 4CQ5A 5H8WA 4MX2A 3TV2A 1T6PA 1Y2MA 1HY1A 3E04A 3CRVA 1W27A 3R6QA 2HVGA 2NYFA 4ADLA 2E9FA 1GKMA 2OHYA 5D6BA 4A15A 3OCFA 4V2QA 1XWOA 2O6YA 2PFMA 5M0IA 4WNLA 1K62A 4V2RA 2PTSA 4APBA 1VDKA 1TJ7A 4FFXA 2QGAB 4EFCA 2FENA 3GTDA 4C5UA 3RRPA 5F92A 1XL8A 2YIIA 3GZHA 1Q5NA 2FUSA 4EEIA 1FUOA 2RJRA 1YISA 1GK3A 3QBPA 5F91A 1XMCA 1YFMA 3NZ4A 4NLEA 1J3UA
chains in the Genus database with same CATH topology
4NSLA 3OCEA 2RJSA 4FLCA 1FUPA 3RD8A 3BHGA 4ADMA 3KDYA 1U16A 3C8TA 1YFEA 5HW2A 3CZOA 3KDZA 1EB4A 1DCNA 1TJWA 3R6VA 1RE5A 2PTRA 2QVEA 1FUQA 1C3UA 1FURA 4HGVA 1TJVA 4C5RA 1I0AA 5EYVA 1HY0A 4C6GA 4C5SA 1GKJA 1JSWA 2X75A 1AUWA 2O78A 2O7DA 2NYNA 5EYTA 1GK2A 3NO9A 1B8FA 4BAAA 4BABA 2O7FA 1U15A 1KQ7A 1TJUA 4APAA 2J91A 2PTQA 2VD6A 3UNVA 2O7BA 1T6JA 1C3CA 1K7WA 3R6YA 2O7EA 4CQ5A 1DOFA 4MX2A 3TV2A 1T6PA 1Y2MA 1HY1A 3E04A 1W27A 3R6QA 2HVGA 2NYFA 4ADLA 2E9FA 1GKMA 2OHYA 5D6BA 3OCFA 4V2QA 1XWOA 2O6YA 2PFMA 1K62A 4V2RA 2PTSA 4APBA 1VDKA 1TJ7A 4FFXA 2QGAB 4EFCA 3GTDA 4C5UA 3RRPA 5F92A 2YIIA 3GZHA 1Q5NA 2FUSA 4EEIA 1FUOA 2RJRA 1YISA 1GK3A 3QBPA 5F91A 1YFMA 3NZ4A 4NLEA 1J3UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NSL A;  3OCE A;  2RJS A;  4FLC A;  1FUP A;  3RD8 A;  3BHG A;  4ADM A;  3KDY A;  1U16 A;  3C8T A;  1YFE A;  5HW2 A;  3CZO A;  3KDZ A;  1EB4 A;  1DCN A;  1TJW A;  3R6V A;  1RE5 A;  2PTR A;  2QVE A;  1FUQ A;  1C3U A;  1FUR A;  4HGV A;  1TJV A;  4C5R A;  1I0A A;  5EYV A;  1HY0 A;  4C6G A;  4C5S A;  1GKJ A;  1JSW A;  2X75 A;  1AUW A;  2O78 A;  2O7D A;  2NYN A;  5EYT A;  1GK2 A;  3NO9 A;  1B8F A;  4BAA A;  4BAB A;  2O7F A;  1U15 A;  1KQ7 A;  1TJU A;  4APA A;  2J91 A;  2PTQ A;  2VD6 A;  3UNV A;  2O7B A;  1T6J A;  1C3C A;  1K7W A;  3R6Y A;  2O7E A;  4CQ5 A;  1DOF A;  4MX2 A;  3TV2 A;  1T6P A;  1Y2M A;  1HY1 A;  3E04 A;  1W27 A;  3R6Q A;  2HVG A;  2NYF A;  4ADL A;  2E9F A;  1GKM A;  2OHY A;  5D6B A;  3OCF A;  4V2Q A;  1XWO A;  2O6Y A;  2PFM A;  1K62 A;  4V2R A;  2PTS A;  4APB A;  1VDK A;  1TJ7 A;  4FFX A;  2QGA B;  4EFC A;  3GTD A;  4C5U A;  3RRP A;  5F92 A;  2YII A;  3GZH A;  1Q5N A;  2FUS A;  4EEI A;  1FUO A;  2RJR A;  1YIS A;  1GK3 A;  3QBP A;  5F91 A;  1YFM A;  3NZ4 A;  4NLE A;  1J3U A; 
#chains in the Genus database with same CATH topology
 4NSL A;  3OCE A;  2RJS A;  4FLC A;  1FUP A;  3RD8 A;  3BHG A;  4ADM A;  3KDY A;  1U16 A;  1XMD A;  3C8T A;  1YFE A;  5HW2 A;  3CZO A;  3KDZ A;  5M0J A;  1EB4 A;  1DCN A;  1TJW A;  3R6V A;  3CRW 1;  1RE5 A;  2PTR A;  2QVE A;  1FUQ A;  1C3U A;  1FUR A;  4HGV A;  1TJV A;  4C5R A;  1I0A A;  5EYV A;  1HY0 A;  2VL7 A;  4C6G A;  4C5S A;  1GKJ A;  1JSW A;  2X75 A;  1AUW A;  2O78 A;  2O7D A;  2NYN A;  5EYT A;  1GK2 A;  1XL7 A;  3NO9 A;  1B8F A;  4BAA A;  4BAB A;  2O7F A;  1XLY A;  1U15 A;  1KQ7 A;  1TJU A;  4APA A;  2J91 A;  2FEL A;  2PTQ A;  2VD6 A;  3UNV A;  2O7B A;  1T6J A;  1C3C A;  1K7W A;  2VSF A;  2O7E A;  3R6Y A;  1DOF A;  4CQ5 A;  5H8W A;  4MX2 A;  3TV2 A;  1T6P A;  1Y2M A;  1HY1 A;  3E04 A;  3CRV A;  1W27 A;  3R6Q A;  2HVG A;  2NYF A;  4ADL A;  2E9F A;  1GKM A;  2OHY A;  5D6B A;  4A15 A;  3OCF A;  4V2Q A;  1XWO A;  2O6Y A;  2PFM A;  5M0I A;  4WNL A;  1K62 A;  4V2R A;  2PTS A;  4APB A;  1VDK A;  1TJ7 A;  4FFX A;  2QGA B;  4EFC A;  2FEN A;  3GTD A;  4C5U A;  3RRP A;  5F92 A;  1XL8 A;  2YII A;  3GZH A;  1Q5N A;  2FUS A;  4EEI A;  1FUO A;  2RJR A;  1YIS A;  1GK3 A;  3QBP A;  5F91 A;  1XMC A;  1YFM A;  3NZ4 A;  4NLE A;  1J3U A; 
#chains in the Genus database with same CATH homology
 4NSL A;  3OCE A;  2RJS A;  4FLC A;  1FUP A;  3RD8 A;  3BHG A;  4ADM A;  3KDY A;  1U16 A;  3C8T A;  1YFE A;  5HW2 A;  3CZO A;  3KDZ A;  1EB4 A;  1DCN A;  1TJW A;  3R6V A;  1RE5 A;  2PTR A;  2QVE A;  1FUQ A;  1C3U A;  1FUR A;  4HGV A;  1TJV A;  4C5R A;  1I0A A;  5EYV A;  1HY0 A;  4C6G A;  4C5S A;  1GKJ A;  1JSW A;  2X75 A;  1AUW A;  2O78 A;  2O7D A;  2NYN A;  5EYT A;  1GK2 A;  3NO9 A;  1B8F A;  4BAA A;  4BAB A;  2O7F A;  1U15 A;  1KQ7 A;  1TJU A;  4APA A;  2J91 A;  2PTQ A;  2VD6 A;  3UNV A;  2O7B A;  1T6J A;  1C3C A;  1K7W A;  3R6Y A;  2O7E A;  4CQ5 A;  1DOF A;  4MX2 A;  3TV2 A;  1T6P A;  1Y2M A;  1HY1 A;  3E04 A;  1W27 A;  3R6Q A;  2HVG A;  2NYF A;  4ADL A;  2E9F A;  1GKM A;  2OHY A;  5D6B A;  3OCF A;  4V2Q A;  1XWO A;  2O6Y A;  2PFM A;  1K62 A;  4V2R A;  2PTS A;  4APB A;  1VDK A;  1TJ7 A;  4FFX A;  2QGA B;  4EFC A;  3GTD A;  4C5U A;  3RRP A;  5F92 A;  2YII A;  3GZH A;  1Q5N A;  2FUS A;  4EEI A;  1FUO A;  2RJR A;  1YIS A;  1GK3 A;  3QBP A;  5F91 A;  1YFM A;  3NZ4 A;  4NLE A;  1J3U A; 
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