2QVEA

Crystal structure of sgtam bound to mechanism based inhibitor
Total Genus 208
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
208
sequence length
526
structure length
525
Chain Sequence
b'PVSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGDLAPLSHVASTLIGEGYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSGDPGLHSGFAGAQYPATALVAENRTIGPASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVDRYMADDIELVADALSRGEFLRAIARETDIQLR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Design and characterization of mechanism-based inhibitors for the tyrosine aminomutase SgTAM
pubmed doi rcsb
molecule keywords Tyrosine Aminomutase
source organism Streptomyces globisporus
molecule tags Transferase
total genus 208
structure length 525
sequence length 526
chains with identical sequence B
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2007-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2qveA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2qveA02
4EEIA 2O7BA 1K7WA 3TV2A 4NSLA 4NLEA 1K62A 4FLCA 1DOFA 3R6VA 1YFEA 3BHGA 3RRPA 2OHYA 1B8FA 5D6BA 3KDYA 1U16A 1T6PA 3QBPA 5F92A 1Q5NA 1VDKA 1GK3A 1HY0A 3R6QA 4V2QA 2PTQA 2O6YA 1TJ7A 5F91A 2RJSA 5EYTA 4C5UA 2X75A 2HVGA 4HGVA 4ADMA 1EB4A 1FUPA 1JSWA 3NO9A 2YIIA 4V2RA 2NYFA 1TJVA 2RJRA 4APBA 1FURA 4C5SA 3CZOA 3OCEA 1KQ7A 1XWOA 1Y2MA 4MX2A 4C5RA 1W27A 1DCNA 1TJUA 2O7DA 2O7FA 2PFMA 3RD8A 1C3UA 3GZHA 2O78A 3R6YA 3NZ4A 2J91A 1HY1A 1J3UA 1FUOA 1T6JA 3UNVA 4APAA 4BABA 3C8TA 1GK2A 3E04A 1I0AA 2NYNA 1YISA 5HW2A 2QVEA 1AUWA 2PTSA 2QGAB 1YFMA 1U15A 5EYVA 4C6GA 4CQ5A 2PTRA 3OCFA 2VD6A 2O7EA 1GKMA 3KDZA 1C3CA 4EFCA 1FUQA 4FFXA 3GTDA 1RE5A 4BAAA 2E9FA 1GKJA 2FUSA 4ADLA 1TJWA
chains in the Genus database with same CATH superfamily
4EEIA 2O7BA 1K7WA 3TV2A 4NSLA 4NLEA 1K62A 4FLCA 1DOFA 1XLYA 3R6VA 1YFEA 3BHGA 3RRPA 2OHYA 1B8FA 5D6BA 3KDYA 1U16A 1T6PA 3QBPA 5F92A 1Q5NA 1VDKA 1GK3A 1HY0A 3R6QA 4V2QA 2PTQA 3CRVA 2O6YA 1TJ7A 5F91A 2RJSA 5EYTA 4C5UA 2X75A 2HVGA 4HGVA 4ADMA 1EB4A 1XL8A 1FUPA 1JSWA 3NO9A 2YIIA 4V2RA 2NYFA 1TJVA 2RJRA 4APBA 1XMCA 1FURA 4C5SA 2FELA 3CZOA 3OCEA 1KQ7A 1XWOA 1Y2MA 4MX2A 2VL7A 4C5RA 1W27A 1DCNA 1TJUA 2O7DA 2O7FA 2PFMA 3RD8A 1C3UA 3GZHA 2O78A 3R6YA 2FENA 3NZ4A 2J91A 1HY1A 2VSFA 1XMDA 1J3UA 1FUOA 1T6JA 3UNVA 4APAA 4BABA 3C8TA 1GK2A 4A15A 3CRW1 3E04A 1I0AA 1XL7A 2NYNA 1YISA 5HW2A 2QVEA 1AUWA 2PTSA 2QGAB 1YFMA 5M0JA 1U15A 5EYVA 4C6GA 4CQ5A 2PTRA 3OCFA 2VD6A 2O7EA 5H8WA 1GKMA 3KDZA 1C3CA 4EFCA 4WNLA 1FUQA 4FFXA 3GTDA 1RE5A 4BAAA 2E9FA 1GKJA 2FUSA 4ADLA 1TJWA 5M0IA
chains in the Genus database with same CATH topology
4EEIA 2O7BA 1K7WA 3TV2A 4NSLA 4NLEA 1K62A 4FLCA 1DOFA 3R6VA 1YFEA 3BHGA 3RRPA 2OHYA 1B8FA 5D6BA 3KDYA 1U16A 1T6PA 3QBPA 5F92A 1Q5NA 1VDKA 1GK3A 1HY0A 3R6QA 4V2QA 2PTQA 2O6YA 1TJ7A 5F91A 2RJSA 5EYTA 4C5UA 2X75A 2HVGA 4HGVA 4ADMA 1EB4A 1FUPA 1JSWA 3NO9A 2YIIA 4V2RA 2NYFA 1TJVA 2RJRA 4APBA 1FURA 4C5SA 3CZOA 3OCEA 1KQ7A 1XWOA 1Y2MA 4MX2A 4C5RA 1W27A 1DCNA 1TJUA 2O7DA 2O7FA 2PFMA 3RD8A 1C3UA 3GZHA 2O78A 3R6YA 3NZ4A 2J91A 1HY1A 1J3UA 1FUOA 1T6JA 3UNVA 4APAA 4BABA 3C8TA 1GK2A 3E04A 1I0AA 2NYNA 1YISA 5HW2A 2QVEA 1AUWA 2PTSA 2QGAB 1YFMA 1U15A 5EYVA 4C6GA 4CQ5A 2PTRA 3OCFA 2VD6A 2O7EA 1GKMA 3KDZA 1C3CA 4EFCA 1FUQA 4FFXA 3GTDA 1RE5A 4BAAA 2E9FA 1GKJA 2FUSA 4ADLA 1TJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EEI A;  2O7B A;  1K7W A;  3TV2 A;  4NSL A;  4NLE A;  1K62 A;  4FLC A;  1DOF A;  3R6V A;  1YFE A;  3BHG A;  3RRP A;  2OHY A;  1B8F A;  5D6B A;  3KDY A;  1U16 A;  1T6P A;  3QBP A;  5F92 A;  1Q5N A;  1VDK A;  1GK3 A;  1HY0 A;  3R6Q A;  4V2Q A;  2PTQ A;  2O6Y A;  1TJ7 A;  5F91 A;  2RJS A;  5EYT A;  4C5U A;  2X75 A;  2HVG A;  4HGV A;  4ADM A;  1EB4 A;  1FUP A;  1JSW A;  3NO9 A;  2YII A;  4V2R A;  2NYF A;  1TJV A;  2RJR A;  4APB A;  1FUR A;  4C5S A;  3CZO A;  3OCE A;  1KQ7 A;  1XWO A;  1Y2M A;  4MX2 A;  4C5R A;  1W27 A;  1DCN A;  1TJU A;  2O7D A;  2O7F A;  2PFM A;  3RD8 A;  1C3U A;  3GZH A;  2O78 A;  3R6Y A;  3NZ4 A;  2J91 A;  1HY1 A;  1J3U A;  1FUO A;  1T6J A;  3UNV A;  4APA A;  4BAB A;  3C8T A;  1GK2 A;  3E04 A;  1I0A A;  2NYN A;  1YIS A;  5HW2 A;  2QVE A;  1AUW A;  2PTS A;  2QGA B;  1YFM A;  1U15 A;  5EYV A;  4C6G A;  4CQ5 A;  2PTR A;  3OCF A;  2VD6 A;  2O7E A;  1GKM A;  3KDZ A;  1C3C A;  4EFC A;  1FUQ A;  4FFX A;  3GTD A;  1RE5 A;  4BAA A;  2E9F A;  1GKJ A;  2FUS A;  4ADL A;  1TJW A; 
#chains in the Genus database with same CATH topology
 4EEI A;  2O7B A;  1K7W A;  3TV2 A;  4NSL A;  4NLE A;  1K62 A;  4FLC A;  1DOF A;  1XLY A;  3R6V A;  1YFE A;  3BHG A;  3RRP A;  2OHY A;  1B8F A;  5D6B A;  3KDY A;  1U16 A;  1T6P A;  3QBP A;  5F92 A;  1Q5N A;  1VDK A;  1GK3 A;  1HY0 A;  3R6Q A;  4V2Q A;  2PTQ A;  3CRV A;  2O6Y A;  1TJ7 A;  5F91 A;  2RJS A;  5EYT A;  4C5U A;  2X75 A;  2HVG A;  4HGV A;  4ADM A;  1EB4 A;  1XL8 A;  1FUP A;  1JSW A;  3NO9 A;  2YII A;  4V2R A;  2NYF A;  1TJV A;  2RJR A;  4APB A;  1XMC A;  1FUR A;  4C5S A;  2FEL A;  3CZO A;  3OCE A;  1KQ7 A;  1XWO A;  1Y2M A;  4MX2 A;  2VL7 A;  4C5R A;  1W27 A;  1DCN A;  1TJU A;  2O7D A;  2O7F A;  2PFM A;  3RD8 A;  1C3U A;  3GZH A;  2O78 A;  3R6Y A;  2FEN A;  3NZ4 A;  2J91 A;  1HY1 A;  2VSF A;  1XMD A;  1J3U A;  1FUO A;  1T6J A;  3UNV A;  4APA A;  4BAB A;  3C8T A;  1GK2 A;  4A15 A;  3CRW 1;  3E04 A;  1I0A A;  1XL7 A;  2NYN A;  1YIS A;  5HW2 A;  2QVE A;  1AUW A;  2PTS A;  2QGA B;  1YFM A;  5M0J A;  1U15 A;  5EYV A;  4C6G A;  4CQ5 A;  2PTR A;  3OCF A;  2VD6 A;  2O7E A;  5H8W A;  1GKM A;  3KDZ A;  1C3C A;  4EFC A;  4WNL A;  1FUQ A;  4FFX A;  3GTD A;  1RE5 A;  4BAA A;  2E9F A;  1GKJ A;  2FUS A;  4ADL A;  1TJW A;  5M0I A; 
#chains in the Genus database with same CATH homology
 4EEI A;  2O7B A;  1K7W A;  3TV2 A;  4NSL A;  4NLE A;  1K62 A;  4FLC A;  1DOF A;  3R6V A;  1YFE A;  3BHG A;  3RRP A;  2OHY A;  1B8F A;  5D6B A;  3KDY A;  1U16 A;  1T6P A;  3QBP A;  5F92 A;  1Q5N A;  1VDK A;  1GK3 A;  1HY0 A;  3R6Q A;  4V2Q A;  2PTQ A;  2O6Y A;  1TJ7 A;  5F91 A;  2RJS A;  5EYT A;  4C5U A;  2X75 A;  2HVG A;  4HGV A;  4ADM A;  1EB4 A;  1FUP A;  1JSW A;  3NO9 A;  2YII A;  4V2R A;  2NYF A;  1TJV A;  2RJR A;  4APB A;  1FUR A;  4C5S A;  3CZO A;  3OCE A;  1KQ7 A;  1XWO A;  1Y2M A;  4MX2 A;  4C5R A;  1W27 A;  1DCN A;  1TJU A;  2O7D A;  2O7F A;  2PFM A;  3RD8 A;  1C3U A;  3GZH A;  2O78 A;  3R6Y A;  3NZ4 A;  2J91 A;  1HY1 A;  1J3U A;  1FUO A;  1T6J A;  3UNV A;  4APA A;  4BAB A;  3C8T A;  1GK2 A;  3E04 A;  1I0A A;  2NYN A;  1YIS A;  5HW2 A;  2QVE A;  1AUW A;  2PTS A;  2QGA B;  1YFM A;  1U15 A;  5EYV A;  4C6G A;  4CQ5 A;  2PTR A;  3OCF A;  2VD6 A;  2O7E A;  1GKM A;  3KDZ A;  1C3C A;  4EFC A;  1FUQ A;  4FFX A;  3GTD A;  1RE5 A;  4BAA A;  2E9F A;  1GKJ A;  2FUS A;  4ADL A;  1TJW A; 
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