2R2KA

Crystal structure of the complex of camel peptidoglycan recognition protein with disaccharide at 3.2a resolution
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
171
structure length
171
Chain Sequence
EDPPACGSIVPRREWRALASECRERLTRPVRYVVVSHTAGSHCDTPASCAQQAQNVQSYHVRNLGWCDVGYNFLIGEDGLVYEGRGWNIKGAHAGPTWNPISIGISFMGNYMNRVPPPRALRAAQNLLACGVALGALRSNYEVKGHRDVQPTLSPGDRLYEIIQTWSHYRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Peptidoglycan recognition protein
publication title Crystal structure of the complex of camel peptidoglycan recognition protein with disaccharide at 3.2A resolution
rcsb
total genus 49
structure length 171
sequence length 171
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 2r2kA00
3RDRA 3D2ZA 2EAXA 3T2VA 4ZXMA 4IVVA 1Z6IA 3NW3A 1YB0A 4OPPA 4ORVA 3TRUA 2APHA 2F2LA 4OUGA 3HMBA 2BH7A 3CG9A 2F2LX 4Z8IA 2RKQA 3O4KA 5CTVA 2AR3A 2Y2EA 3UMQA 2L47A 4X36A 4KNKA 3UILA 4BXDA 2CB3A 4OLSA 2XZ4A 2Y2BA 1J3GA 1SK3A 4BPAA 3UMLA 1OHTA 2Z9NA 4KNLA 3CORA 3NNOA 5DWFA 1AROL 4BOLA 1SK4A 2Y2DA 1S2JA 2EAVA 3QV4A 4Q8SA 4BJ4A 3RT4A 3T39A 3QS0A 1TWQA 4BXJA 3QJ1A 3C2XA 4Q9EA 1SXRA 3D2YA 3CXAA 3EP1A 5E0BA 2Y2CA 3USXA 3OGXA 2R2KA 2XZ8A 5E0AA 1LBAA 4GF9A 3NG4A 2WKXA 2R90A 4BXEA 2Y28A 1YCKA 3LATA 4FNNA
chains in the Genus database with same CATH superfamily
3RDRA 3D2ZA 2EAXA 3T2VA 4ZXMA 4IVVA 1Z6IA 3NW3A 1YB0A 4OPPA 4ORVA 3TRUA 2APHA 2F2LA 4OUGA 3HMBA 2BH7A 3CG9A 2F2LX 4Z8IA 2RKQA 3O4KA 5CTVA 2AR3A 2Y2EA 3UMQA 2L47A 4X36A 4KNKA 3UILA 4BXDA 2CB3A 4OLSA 2XZ4A 2Y2BA 1J3GA 1SK3A 4BPAA 3UMLA 1OHTA 2Z9NA 4KNLA 3CORA 3NNOA 5DWFA 1AROL 4BOLA 1SK4A 2Y2DA 1S2JA 2EAVA 3QV4A 4Q8SA 4BJ4A 3RT4A 3T39A 3QS0A 1TWQA 4BXJA 3QJ1A 3C2XA 4Q9EA 1SXRA 3D2YA 3CXAA 3EP1A 5E0BA 2Y2CA 3USXA 3OGXA 2R2KA 2XZ8A 5E0AA 1LBAA 4GF9A 3NG4A 2WKXA 2R90A 4BXEA 2Y28A 1YCKA 3LATA 4FNNA
chains in the Genus database with same CATH topology
3RDRA 3D2ZA 2EAXA 3T2VA 4ZXMA 4IVVA 1Z6IA 3NW3A 1YB0A 4OPPA 4ORVA 3TRUA 2APHA 2F2LA 4OUGA 3HMBA 2BH7A 3CG9A 2F2LX 4Z8IA 2RKQA 3O4KA 5CTVA 2AR3A 2Y2EA 3UMQA 2L47A 4X36A 4KNKA 3UILA 4BXDA 2CB3A 4OLSA 2XZ4A 2Y2BA 1J3GA 1SK3A 4BPAA 3UMLA 1OHTA 2Z9NA 4KNLA 3CORA 3NNOA 5DWFA 1AROL 4BOLA 1SK4A 2Y2DA 1S2JA 2EAVA 3QV4A 4Q8SA 4BJ4A 3RT4A 3T39A 3QS0A 1TWQA 4BXJA 3QJ1A 3C2XA 4Q9EA 1SXRA 3D2YA 3CXAA 3EP1A 5E0BA 2Y2CA 3USXA 3OGXA 2R2KA 2XZ8A 5E0AA 1LBAA 4GF9A 3NG4A 2WKXA 2R90A 4BXEA 2Y28A 1YCKA 3LATA 4FNNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RDR A;  3D2Z A;  2EAX A;  3T2V A;  4ZXM A;  4IVV A;  1Z6I A;  3NW3 A;  1YB0 A;  4OPP A;  4ORV A;  3TRU A;  2APH A;  2F2L A;  4OUG A;  3HMB A;  2BH7 A;  3CG9 A;  2F2L X;  4Z8I A;  2RKQ A;  3O4K A;  5CTV A;  2AR3 A;  2Y2E A;  3UMQ A;  2L47 A;  4X36 A;  4KNK A;  3UIL A;  4BXD A;  2CB3 A;  4OLS A;  2XZ4 A;  2Y2B A;  1J3G A;  1SK3 A;  4BPA A;  3UML A;  1OHT A;  2Z9N A;  4KNL A;  3COR A;  3NNO A;  5DWF A;  1ARO L;  4BOL A;  1SK4 A;  2Y2D A;  1S2J A;  2EAV A;  3QV4 A;  4Q8S A;  4BJ4 A;  3RT4 A;  3T39 A;  3QS0 A;  1TWQ A;  4BXJ A;  3QJ1 A;  3C2X A;  4Q9E A;  1SXR A;  3D2Y A;  3CXA A;  3EP1 A;  5E0B A;  2Y2C A;  3USX A;  3OGX A;  2R2K A;  2XZ8 A;  5E0A A;  1LBA A;  4GF9 A;  3NG4 A;  2WKX A;  2R90 A;  4BXE A;  2Y28 A;  1YCK A;  3LAT A;  4FNN A; 
#chains in the Genus database with same CATH topology
 3RDR A;  3D2Z A;  2EAX A;  3T2V A;  4ZXM A;  4IVV A;  1Z6I A;  3NW3 A;  1YB0 A;  4OPP A;  4ORV A;  3TRU A;  2APH A;  2F2L A;  4OUG A;  3HMB A;  2BH7 A;  3CG9 A;  2F2L X;  4Z8I A;  2RKQ A;  3O4K A;  5CTV A;  2AR3 A;  2Y2E A;  3UMQ A;  2L47 A;  4X36 A;  4KNK A;  3UIL A;  4BXD A;  2CB3 A;  4OLS A;  2XZ4 A;  2Y2B A;  1J3G A;  1SK3 A;  4BPA A;  3UML A;  1OHT A;  2Z9N A;  4KNL A;  3COR A;  3NNO A;  5DWF A;  1ARO L;  4BOL A;  1SK4 A;  2Y2D A;  1S2J A;  2EAV A;  3QV4 A;  4Q8S A;  4BJ4 A;  3RT4 A;  3T39 A;  3QS0 A;  1TWQ A;  4BXJ A;  3QJ1 A;  3C2X A;  4Q9E A;  1SXR A;  3D2Y A;  3CXA A;  3EP1 A;  5E0B A;  2Y2C A;  3USX A;  3OGX A;  2R2K A;  2XZ8 A;  5E0A A;  1LBA A;  4GF9 A;  3NG4 A;  2WKX A;  2R90 A;  4BXE A;  2Y28 A;  1YCK A;  3LAT A;  4FNN A; 
#chains in the Genus database with same CATH homology
 3RDR A;  3D2Z A;  2EAX A;  3T2V A;  4ZXM A;  4IVV A;  1Z6I A;  3NW3 A;  1YB0 A;  4OPP A;  4ORV A;  3TRU A;  2APH A;  2F2L A;  4OUG A;  3HMB A;  2BH7 A;  3CG9 A;  2F2L X;  4Z8I A;  2RKQ A;  3O4K A;  5CTV A;  2AR3 A;  2Y2E A;  3UMQ A;  2L47 A;  4X36 A;  4KNK A;  3UIL A;  4BXD A;  2CB3 A;  4OLS A;  2XZ4 A;  2Y2B A;  1J3G A;  1SK3 A;  4BPA A;  3UML A;  1OHT A;  2Z9N A;  4KNL A;  3COR A;  3NNO A;  5DWF A;  1ARO L;  4BOL A;  1SK4 A;  2Y2D A;  1S2J A;  2EAV A;  3QV4 A;  4Q8S A;  4BJ4 A;  3RT4 A;  3T39 A;  3QS0 A;  1TWQ A;  4BXJ A;  3QJ1 A;  3C2X A;  4Q9E A;  1SXR A;  3D2Y A;  3CXA A;  3EP1 A;  5E0B A;  2Y2C A;  3USX A;  3OGX A;  2R2K A;  2XZ8 A;  5E0A A;  1LBA A;  4GF9 A;  3NG4 A;  2WKX A;  2R90 A;  4BXE A;  2Y28 A;  1YCK A;  3LAT A;  4FNN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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