2R52A

Crystal structure analysis of bone morphogenetic protein-6 (bmp-6)
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
105
structure length
105
Chain Sequence
KTACRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGCH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Cytokine
molecule keywords Bone morphogenetic protein 6
publication title Type I receptor binding of bone morphogenetic protein 6 is dependent on N-glycosylation of the ligand.
pubmed doi rcsb
source organism Homo sapiens
total genus 13
structure length 105
sequence length 105
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 2r52A00
4EAXA 3MJGA 1S4YB 5BQ8B 4UI2B 2QJ9A 2XACA 1CZ8V 2P6AA 1AGQA 1KLCA 1KATW 1BMPA 2TGIA 4QHUC 5HK5A 1DZ7A 1TFGA 4EDXV 1TZIV 1HCNA 1QFWB 1WWWV 5HI3A 4MQWA 1HD4A 1LX5A 1FL7A 1NT3A 3IJ2A 2FJGV 1KTZA 2X1XE 4KXZA 4EFVA 4HQXA 4MQWB 3BUKA 1FL7B 1M4UA 2BHKA 2XV7A 4AY9B 4EC7A 1VPFA 3S1BV 1REUA 2ARVA 5F3HI 1VPPV 4XPJA 5FV2V 3E07A 2V5EB 1TZHV 4FAOA 2GYZA 1NYUB 1WQ9B 1B8MA 1NYSB 2ASKA 1BNDA 1FZVA 1E9JA 2VWEA 3B4VA 4HQUA 4HR9A 4ZFFC 1WAQA 2QR0C 2B0UA 5E4GA 1JPYA 2QCQA 3V2AA 1LXIA 1BJ1V 3FUBB 2R52A 2PJYA 5BQ8D 3BK3A 1HCNB 4UHZA 4MPLA 2FJHV 4GLNE 5JZ7A 1BTGA 4EDWV 4MIDA 4LXSJ 3BMPA 2QCWA 1XWDA 3JVFA 1SG1A 4HSAA 5HI5A 3S1KV 1WQ8A 1HRPA 1TGJA 4KV5A 1MKKA 2QJBA 5FV1V 4QAFC 2ARPA 2KD3A 1B8MB 4UHYA 1BNDB 1HRPB 1MKGA 1ZKZA 5AEJA 3QTKA 1TGKA 1QTYR 2H64A 4BV4L 2GYRA 2R53A 3V6BA 5BQCA 5HHXA 1B8KA 4X1JA 3SEKB 1RV6V 1FLTV 2GH0C 2X1WA 1M4UL 5HHDA 5HHCA 2VPFA 1SGFB 5BQEA 3EO1C 2VXSA 3HH2A 5BQBA 3MJKA 1REWA 1QFWA 2C7WA 4ZBNA 4UI0A 5F3BC 5BQEB 1BETA 1ES7A 1B98A 3BDYV 2QJAA 3RJRA 2GOOA 1PDGA 4YCGC 4UI1A 1XWDB 4LXRJ 2H62A 2GNNA 3EVSB 4AY9A 4N1DA 4GLSE 5HI4A 3P9WA 3KFDA 4YCIC 4KZNA 1AOCA 3QB4A 5HK5E 2IFGE 5BPUA 1WQ9A 5HHVA 1HCFA 5BQ8A 4WPBA 4QCIC 1MJVA 1KLAA
chains in the Genus database with same CATH superfamily
4EAXA 3MJGA 1S4YB 5BQ8B 4UI2B 2QJ9A 2XACA 1CZ8V 2P6AA 1AGQA 1KLCA 1KATW 1BMPA 2TGIA 4QHUC 5HK5A 1DZ7A 1TFGA 4EDXV 1TZIV 1HCNA 1QFWB 1WWWV 5HI3A 4MQWA 1HD4A 1LX5A 1FL7A 1NT3A 3IJ2A 2FJGV 1KTZA 2X1XE 4KXZA 4EFVA 4HQXA 4MQWB 3BUKA 1FL7B 1M4UA 2BHKA 2XV7A 4AY9B 4EC7A 1VPFA 3S1BV 1REUA 2ARVA 5F3HI 1VPPV 4XPJA 5FV2V 3E07A 2V5EB 1TZHV 4FAOA 2GYZA 1NYUB 1WQ9B 1B8MA 1NYSB 2ASKA 1BNDA 1FZVA 1E9JA 2VWEA 3B4VA 4HQUA 4HR9A 4ZFFC 1WAQA 2QR0C 2B0UA 5E4GA 1JPYA 2QCQA 3V2AA 1LXIA 1BJ1V 3FUBB 2R52A 2PJYA 5BQ8D 3BK3A 1HCNB 4UHZA 4MPLA 2FJHV 4GLNE 5JZ7A 1BTGA 4EDWV 4MIDA 4LXSJ 3BMPA 2QCWA 1XWDA 3JVFA 1SG1A 4HSAA 5HI5A 3S1KV 1WQ8A 1HRPA 1TGJA 4KV5A 1MKKA 2QJBA 5FV1V 4QAFC 2ARPA 2KD3A 1B8MB 4UHYA 1BNDB 1HRPB 1MKGA 1ZKZA 5AEJA 3QTKA 1TGKA 1QTYR 2H64A 4BV4L 2GYRA 2R53A 3V6BA 5BQCA 5HHXA 1B8KA 4X1JA 3SEKB 1RV6V 1FLTV 2GH0C 2X1WA 1M4UL 5HHDA 5HHCA 2VPFA 1SGFB 5BQEA 3EO1C 2VXSA 3HH2A 5BQBA 3MJKA 1REWA 1QFWA 2C7WA 4ZBNA 4UI0A 5F3BC 5BQEB 1BETA 1ES7A 1B98A 3BDYV 2QJAA 3RJRA 2GOOA 1PDGA 4YCGC 4UI1A 1XWDB 4LXRJ 2H62A 2GNNA 3EVSB 4AY9A 4N1DA 4GLSE 5HI4A 3P9WA 3KFDA 4YCIC 4KZNA 1AOCA 3QB4A 5HK5E 2IFGE 5BPUA 1WQ9A 5HHVA 1HCFA 5BQ8A 4WPBA 4QCIC 1MJVA 1KLAA
chains in the Genus database with same CATH topology
4EAXA 3MJGA 1S4YB 5BQ8B 4UI2B 2QJ9A 2XACA 1CZ8V 2P6AA 1AGQA 1KLCA 1KATW 1BMPA 2TGIA 4QHUC 5HK5A 1DZ7A 1TFGA 4EDXV 1TZIV 1HCNA 1QFWB 1WWWV 5HI3A 4MQWA 1HD4A 1LX5A 1FL7A 1NT3A 3IJ2A 2FJGV 1KTZA 2X1XE 4KXZA 4EFVA 4HQXA 4MQWB 3BUKA 1FL7B 1M4UA 2BHKA 2XV7A 4AY9B 4EC7A 1VPFA 3S1BV 1REUA 2ARVA 5F3HI 1VPPV 4XPJA 5FV2V 3E07A 2V5EB 1TZHV 4FAOA 2GYZA 1NYUB 1WQ9B 1B8MA 1NYSB 2ASKA 1BNDA 1FZVA 1E9JA 2VWEA 3B4VA 4HQUA 4HR9A 4ZFFC 1WAQA 2QR0C 2B0UA 5E4GA 1JPYA 2QCQA 3V2AA 1LXIA 1BJ1V 3FUBB 2R52A 2PJYA 5BQ8D 3BK3A 1HCNB 4UHZA 4MPLA 2FJHV 4GLNE 5JZ7A 1BTGA 4EDWV 4MIDA 4LXSJ 3BMPA 2QCWA 1XWDA 3JVFA 1SG1A 4HSAA 5HI5A 3S1KV 1WQ8A 1HRPA 1TGJA 4KV5A 1MKKA 2QJBA 5FV1V 4QAFC 2ARPA 2KD3A 1B8MB 4UHYA 1BNDB 1HRPB 1MKGA 1ZKZA 5AEJA 3QTKA 1TGKA 1QTYR 2H64A 4BV4L 2GYRA 2R53A 3V6BA 5BQCA 5HHXA 1B8KA 4X1JA 3SEKB 1RV6V 1FLTV 2GH0C 2X1WA 1M4UL 5HHDA 5HHCA 2VPFA 1SGFB 5BQEA 3EO1C 2VXSA 3HH2A 5BQBA 3MJKA 1REWA 1QFWA 2C7WA 4ZBNA 4UI0A 5F3BC 5BQEB 1BETA 1ES7A 1B98A 3BDYV 2QJAA 3RJRA 2GOOA 1PDGA 4YCGC 4UI1A 1XWDB 4LXRJ 2H62A 2GNNA 3EVSB 4AY9A 4N1DA 4GLSE 5HI4A 3P9WA 3KFDA 4YCIC 4KZNA 1AOCA 3QB4A 5HK5E 2IFGE 5BPUA 1WQ9A 5HHVA 1HCFA 5BQ8A 4WPBA 4QCIC 1MJVA 1KLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EAX A;  3MJG A;  1S4Y B;  5BQ8 B;  4UI2 B;  2QJ9 A;  2XAC A;  1CZ8 V;  2P6A A;  1AGQ A;  1KLC A;  1KAT W;  1BMP A;  2TGI A;  4QHU C;  5HK5 A;  1DZ7 A;  1TFG A;  4EDX V;  1TZI V;  1HCN A;  1QFW B;  1WWW V;  5HI3 A;  4MQW A;  1HD4 A;  1LX5 A;  1FL7 A;  1NT3 A;  3IJ2 A;  2FJG V;  1KTZ A;  2X1X E;  4KXZ A;  4EFV A;  4HQX A;  4MQW B;  3BUK A;  1FL7 B;  1M4U A;  2BHK A;  2XV7 A;  4AY9 B;  4EC7 A;  1VPF A;  3S1B V;  1REU A;  2ARV A;  5F3H I;  1VPP V;  4XPJ A;  5FV2 V;  3E07 A;  2V5E B;  1TZH V;  4FAO A;  2GYZ A;  1NYU B;  1WQ9 B;  1B8M A;  1NYS B;  2ASK A;  1BND A;  1FZV A;  1E9J A;  2VWE A;  3B4V A;  4HQU A;  4HR9 A;  4ZFF C;  1WAQ A;  2QR0 C;  2B0U A;  5E4G A;  1JPY A;  2QCQ A;  3V2A A;  1LXI A;  1BJ1 V;  3FUB B;  2R52 A;  2PJY A;  5BQ8 D;  3BK3 A;  1HCN B;  4UHZ A;  4MPL A;  2FJH V;  4GLN E;  5JZ7 A;  1BTG A;  4EDW V;  4MID A;  4LXS J;  3BMP A;  2QCW A;  1XWD A;  3JVF A;  1SG1 A;  4HSA A;  5HI5 A;  3S1K V;  1WQ8 A;  1HRP A;  1TGJ A;  4KV5 A;  1MKK A;  2QJB A;  5FV1 V;  4QAF C;  2ARP A;  2KD3 A;  1B8M B;  4UHY A;  1BND B;  1HRP B;  1MKG A;  1ZKZ A;  5AEJ A;  3QTK A;  1TGK A;  1QTY R;  2H64 A;  4BV4 L;  2GYR A;  2R53 A;  3V6B A;  5BQC A;  5HHX A;  1B8K A;  4X1J A;  3SEK B;  1RV6 V;  1FLT V;  2GH0 C;  2X1W A;  1M4U L;  5HHD A;  5HHC A;  2VPF A;  1SGF B;  5BQE A;  3EO1 C;  2VXS A;  3HH2 A;  5BQB A;  3MJK A;  1REW A;  1QFW A;  2C7W A;  4ZBN A;  4UI0 A;  5F3B C;  5BQE B;  1BET A;  1ES7 A;  1B98 A;  3BDY V;  2QJA A;  3RJR A;  2GOO A;  1PDG A;  4YCG C;  4UI1 A;  1XWD B;  4LXR J;  2H62 A;  2GNN A;  3EVS B;  4AY9 A;  4N1D A;  4GLS E;  5HI4 A;  3P9W A;  3KFD A;  4YCI C;  4KZN A;  1AOC A;  3QB4 A;  5HK5 E;  2IFG E;  5BPU A;  1WQ9 A;  5HHV A;  1HCF A;  5BQ8 A;  4WPB A;  4QCI C;  1MJV A;  1KLA A; 
#chains in the Genus database with same CATH topology
 4EAX A;  3MJG A;  1S4Y B;  5BQ8 B;  4UI2 B;  2QJ9 A;  2XAC A;  1CZ8 V;  2P6A A;  1AGQ A;  1KLC A;  1KAT W;  1BMP A;  2TGI A;  4QHU C;  5HK5 A;  1DZ7 A;  1TFG A;  4EDX V;  1TZI V;  1HCN A;  1QFW B;  1WWW V;  5HI3 A;  4MQW A;  1HD4 A;  1LX5 A;  1FL7 A;  1NT3 A;  3IJ2 A;  2FJG V;  1KTZ A;  2X1X E;  4KXZ A;  4EFV A;  4HQX A;  4MQW B;  3BUK A;  1FL7 B;  1M4U A;  2BHK A;  2XV7 A;  4AY9 B;  4EC7 A;  1VPF A;  3S1B V;  1REU A;  2ARV A;  5F3H I;  1VPP V;  4XPJ A;  5FV2 V;  3E07 A;  2V5E B;  1TZH V;  4FAO A;  2GYZ A;  1NYU B;  1WQ9 B;  1B8M A;  1NYS B;  2ASK A;  1BND A;  1FZV A;  1E9J A;  2VWE A;  3B4V A;  4HQU A;  4HR9 A;  4ZFF C;  1WAQ A;  2QR0 C;  2B0U A;  5E4G A;  1JPY A;  2QCQ A;  3V2A A;  1LXI A;  1BJ1 V;  3FUB B;  2R52 A;  2PJY A;  5BQ8 D;  3BK3 A;  1HCN B;  4UHZ A;  4MPL A;  2FJH V;  4GLN E;  5JZ7 A;  1BTG A;  4EDW V;  4MID A;  4LXS J;  3BMP A;  2QCW A;  1XWD A;  3JVF A;  1SG1 A;  4HSA A;  5HI5 A;  3S1K V;  1WQ8 A;  1HRP A;  1TGJ A;  4KV5 A;  1MKK A;  2QJB A;  5FV1 V;  4QAF C;  2ARP A;  2KD3 A;  1B8M B;  4UHY A;  1BND B;  1HRP B;  1MKG A;  1ZKZ A;  5AEJ A;  3QTK A;  1TGK A;  1QTY R;  2H64 A;  4BV4 L;  2GYR A;  2R53 A;  3V6B A;  5BQC A;  5HHX A;  1B8K A;  4X1J A;  3SEK B;  1RV6 V;  1FLT V;  2GH0 C;  2X1W A;  1M4U L;  5HHD A;  5HHC A;  2VPF A;  1SGF B;  5BQE A;  3EO1 C;  2VXS A;  3HH2 A;  5BQB A;  3MJK A;  1REW A;  1QFW A;  2C7W A;  4ZBN A;  4UI0 A;  5F3B C;  5BQE B;  1BET A;  1ES7 A;  1B98 A;  3BDY V;  2QJA A;  3RJR A;  2GOO A;  1PDG A;  4YCG C;  4UI1 A;  1XWD B;  4LXR J;  2H62 A;  2GNN A;  3EVS B;  4AY9 A;  4N1D A;  4GLS E;  5HI4 A;  3P9W A;  3KFD A;  4YCI C;  4KZN A;  1AOC A;  3QB4 A;  5HK5 E;  2IFG E;  5BPU A;  1WQ9 A;  5HHV A;  1HCF A;  5BQ8 A;  4WPB A;  4QCI C;  1MJV A;  1KLA A; 
#chains in the Genus database with same CATH homology
 4EAX A;  3MJG A;  1S4Y B;  5BQ8 B;  4UI2 B;  2QJ9 A;  2XAC A;  1CZ8 V;  2P6A A;  1AGQ A;  1KLC A;  1KAT W;  1BMP A;  2TGI A;  4QHU C;  5HK5 A;  1DZ7 A;  1TFG A;  4EDX V;  1TZI V;  1HCN A;  1QFW B;  1WWW V;  5HI3 A;  4MQW A;  1HD4 A;  1LX5 A;  1FL7 A;  1NT3 A;  3IJ2 A;  2FJG V;  1KTZ A;  2X1X E;  4KXZ A;  4EFV A;  4HQX A;  4MQW B;  3BUK A;  1FL7 B;  1M4U A;  2BHK A;  2XV7 A;  4AY9 B;  4EC7 A;  1VPF A;  3S1B V;  1REU A;  2ARV A;  5F3H I;  1VPP V;  4XPJ A;  5FV2 V;  3E07 A;  2V5E B;  1TZH V;  4FAO A;  2GYZ A;  1NYU B;  1WQ9 B;  1B8M A;  1NYS B;  2ASK A;  1BND A;  1FZV A;  1E9J A;  2VWE A;  3B4V A;  4HQU A;  4HR9 A;  4ZFF C;  1WAQ A;  2QR0 C;  2B0U A;  5E4G A;  1JPY A;  2QCQ A;  3V2A A;  1LXI A;  1BJ1 V;  3FUB B;  2R52 A;  2PJY A;  5BQ8 D;  3BK3 A;  1HCN B;  4UHZ A;  4MPL A;  2FJH V;  4GLN E;  5JZ7 A;  1BTG A;  4EDW V;  4MID A;  4LXS J;  3BMP A;  2QCW A;  1XWD A;  3JVF A;  1SG1 A;  4HSA A;  5HI5 A;  3S1K V;  1WQ8 A;  1HRP A;  1TGJ A;  4KV5 A;  1MKK A;  2QJB A;  5FV1 V;  4QAF C;  2ARP A;  2KD3 A;  1B8M B;  4UHY A;  1BND B;  1HRP B;  1MKG A;  1ZKZ A;  5AEJ A;  3QTK A;  1TGK A;  1QTY R;  2H64 A;  4BV4 L;  2GYR A;  2R53 A;  3V6B A;  5BQC A;  5HHX A;  1B8K A;  4X1J A;  3SEK B;  1RV6 V;  1FLT V;  2GH0 C;  2X1W A;  1M4U L;  5HHD A;  5HHC A;  2VPF A;  1SGF B;  5BQE A;  3EO1 C;  2VXS A;  3HH2 A;  5BQB A;  3MJK A;  1REW A;  1QFW A;  2C7W A;  4ZBN A;  4UI0 A;  5F3B C;  5BQE B;  1BET A;  1ES7 A;  1B98 A;  3BDY V;  2QJA A;  3RJR A;  2GOO A;  1PDG A;  4YCG C;  4UI1 A;  1XWD B;  4LXR J;  2H62 A;  2GNN A;  3EVS B;  4AY9 A;  4N1D A;  4GLS E;  5HI4 A;  3P9W A;  3KFD A;  4YCI C;  4KZN A;  1AOC A;  3QB4 A;  5HK5 E;  2IFG E;  5BPU A;  1WQ9 A;  5HHV A;  1HCF A;  5BQ8 A;  4WPB A;  4QCI C;  1MJV A;  1KLA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...