2R7PA

Crystal structure of h225a nsp2 and amppnp complex
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
312
structure length
308
Chain Sequence
AELACFCYPHLENDSYKFIPFNNLAIKAMLTAKVDKKDMDKFYDSIIYGIAPPPQFKKRYNTNDNSRGMNFETIMFTKVAMLICEALNSLKVTQANVSNVLSRVVSIRHLENLVIRKENPQDILFHSKDLLLKSTLIAIGQSKEIETTITAEGGEIVFQNAAFTMWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELVAELRWQYNKFAVITHGKGAYRIVKYSSVANHADRVYATFKSNVKNDFNLLDQRIIWQNWYAFTSSMKQGNTLDVCKRLLFQKMKPEKNPFKGLSTDRKMDEVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Non-structural RNA-binding protein 35
publication title Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity
pubmed doi rcsb
source organism Simian 11 rotavirus (serotype 3 / strain sa11-ramig)
total genus 90
structure length 308
sequence length 312
ec nomenclature
pdb deposition date 2007-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02509 Rota_NS35 Rotavirus non-structural protein 35
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.20 Alpha Beta 2-Layer Sandwich HIT family, subunit A Rotavirus NSP2 fragment, C-terminal domain 2r7pA02
3.90.1400.10 Alpha Beta Alpha-Beta Complex Rotavirus NSP2 fragment, N-terminal domain Rotavirus NSP2 fragment, N-terminal domain 2r7pA01
2R7CA 2GU0A 4G0JA 2R8FA 2R7PA 2R7JA 4G0AA 1L9VA
chains in the Genus database with same CATH superfamily
2R7CA 3KSVA 4NDHA 1GUQA 2FITA 3L7XA 4EQGA 4QEBA 3SZQA 3O1XA 1KPBA 4ZKLA 4NK0A 2H39A 4I5TA 4QDEA 5I2EA 1KPAA 3SPDA 1Z84A 2R7PA 4NDIA 4YKLB 4INIA 5RHNA 5EMTA 4EQEA 4XBAA 3IMIA 4I5VA 1XMMA 1RZYA 1KPEA 4NJXA 5CS2A 4ZGLA 2GU0A 4RHNA 3N1SA 3LB5A 3OMFA 1ST0A 2POFA 2Q4HA 3NRDA 4FITA 2R8FA 4I5WA 5IPCA 2Q4LA 3BLAA 5IPEA 5FITA 3FITA 1XMLA 3O1CA 4INCA 4NJYA 1GUPA 3BL7A 4G0AA 5IN3A 3WO5A 2OIKA 1ST4A 2FHIA 5ED6A 2LJWA 3QGZA 3TW2A 6FITA 3RHNA 4NDGA 3N1TA 3OJ7A 4EQHA 2EO4A 1VLRA 4G0JA 3SPLA 3I24A 6RHNA 1FHIA 1AV5A 3I4SA 3P0TA 3O1ZA 4ZKVA 3OXKA 1HXPA 1EMSA 1KPFA 3OHEA 4EGUA 3BL9A 5ED3A 1FITA 1HXQA 3O0MA 4NJZA 1ZWJA 3R6FA 5IPBA 4NDFA 5I2FA 3SP4A 1KPCA 2R7JA 4QDVA 1L9VA 3ANOA 1Y23A 5IPDA 5BV3A
chains in the Genus database with same CATH topology
2R7CA 2GU0A 4G0JA 2R8FA 2R7PA 2R7JA 4G0AA 1L9VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R7C A;  2GU0 A;  4G0J A;  2R8F A;  2R7P A;  2R7J A;  4G0A A;  1L9V A; 
#chains in the Genus database with same CATH topology
 2R7C A;  3KSV A;  4NDH A;  1GUQ A;  2FIT A;  3L7X A;  4EQG A;  4QEB A;  3SZQ A;  3O1X A;  1KPB A;  4ZKL A;  4NK0 A;  2H39 A;  4I5T A;  4QDE A;  5I2E A;  1KPA A;  3SPD A;  1Z84 A;  2R7P A;  4NDI A;  4YKL B;  4INI A;  5RHN A;  5EMT A;  4EQE A;  4XBA A;  3IMI A;  4I5V A;  1XMM A;  1RZY A;  1KPE A;  4NJX A;  5CS2 A;  4ZGL A;  2GU0 A;  4RHN A;  3N1S A;  3LB5 A;  3OMF A;  1ST0 A;  2POF A;  2Q4H A;  3NRD A;  4FIT A;  2R8F A;  4I5W A;  5IPC A;  2Q4L A;  3BLA A;  5IPE A;  5FIT A;  3FIT A;  1XML A;  3O1C A;  4INC A;  4NJY A;  1GUP A;  3BL7 A;  4G0A A;  5IN3 A;  3WO5 A;  2OIK A;  1ST4 A;  2FHI A;  5ED6 A;  2LJW A;  3QGZ A;  3TW2 A;  6FIT A;  3RHN A;  4NDG A;  3N1T A;  3OJ7 A;  4EQH A;  2EO4 A;  1VLR A;  4G0J A;  3SPL A;  3I24 A;  6RHN A;  1FHI A;  1AV5 A;  3I4S A;  3P0T A;  3O1Z A;  4ZKV A;  3OXK A;  1HXP A;  1EMS A;  1KPF A;  3OHE A;  4EGU A;  3BL9 A;  5ED3 A;  1FIT A;  1HXQ A;  3O0M A;  4NJZ A;  1ZWJ A;  3R6F A;  5IPB A;  4NDF A;  5I2F A;  3SP4 A;  1KPC A;  2R7J A;  4QDV A;  1L9V A;  3ANO A;  1Y23 A;  5IPD A;  5BV3 A; 
#chains in the Genus database with same CATH homology
 2R7C A;  2GU0 A;  4G0J A;  2R8F A;  2R7P A;  2R7J A;  4G0A A;  1L9V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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