2R7ZD

Cisplatin lesion containing rna polymerase ii elongation complex
Total Genus 43
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
218
structure length
177
Chain Sequence
STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKTREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription/dna-rna hybrid
molecule keywords 5'-D(*TP*AP*CP*TP*TP*GUP*CP*CP*CP*TP*CP*CP*TP*CP*AP*T)-3'
publication title Mechanism of transcriptional stalling at cisplatin-damaged DNA.
pubmed doi rcsb
total genus 43
structure length 177
sequence length 218
ec nomenclature
pdb deposition date 2007-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 2r7zD02
4BBSD 2JA5D 1Y14A 1WCMD 5IYDD 4A3ED 4A3KD 3AYHA 2B63D 4BY1D 4A3BD 2JA8D 5C3ED 2JA7D 2R92D 3HOUD 3HOVD 3FKID 2R7ZD 4BXXD 3HOXD 2VUMD 4A93D 1Y1VD 5C4XD 4A3JD 3HOZD 2R93D 3H0GD 5IYCD 3HOWD 3I4ND 5FLMD 3PO2D 4BY7D 5IP9D 5IYBD 3I4MD 5IP7D 4A3DD 3H3VE 4A3MD 4A3GD 4BBRD 4A3LD 4A3ID 2JA6D 4A3FD 2C35A 3PO3D 5C44D 4A3CD 3HOYD 1Y1WD
chains in the Genus database with same CATH superfamily
1Y14A 3G9VB 3SE4B 1HULA 4NI9A 4IKZA 4JREA 3L5WI 2L3OA 1M4RA 4ZWCA 1Y1VD 2E9WC 2ERJD 2Q98A 4LEPA 3I4MD 2CFPA 1ALUA 2B5IA 2Y5YA 3BPNA 5EQGA 1HUWA 2GMFA 1M4CA 4O6KA 4ZS7A 3INKC 4JA3A 4ZYRA 5FUCA 1M47A 5IP9D 1RCBA 5C7XA 4J4LC 1PV6A 4UVMA 4NEMA 1HZIA 4X51A 1Z92A 4ZF7A 5D59A 2LMSA 3DI3A 1IL6A 1I1RB 3OG4A 4BXXD 1FYHA 5IYBD 4GBYA 1CNT1 5C44D 5A2OA 1YKBA 3EJJA 3QAZA 4A3ED 2D9QA 4DKFA 2B63D 3OQ3A 2OQPA 5C4XD 3H0GD 3N0PA 4TPJA 3PIWA 3BPOA 1Y1WD 3NCFA 4ZWBA 3BPLA 4EXNA 1V7NV 4IKYA 5EQIA 4ZW9A 1D9CA 1Y6NL 4IKWA 2JA7D 2Q14A 2B90A 1RHGA 3UF5A 5A2NA 2CYKA 2XQBA 3QWRB 1P9MB 4NI7A 1V7MV 5IYDD 4GC0A 2O27A 4XNJA 3VA2A 1M4AA 4NN5A 4W6VA 1VLKA 3HOUD 3FKID 4O9HA 1HIKA 3TGXB 3UEZE 4D2BA 2R93D 1ILKA 2H24A 3WDOA 5GXBA 2L3YA 5EQHA 2O6IA 1BGCA 1WCMD 5D70A 5FHXA 3QT2C 3S9DA 4U4VA 4YBQA 1KF9A 4A93D 4NKQC 3NPZA 1BGDA 1CSGA 3O7QA 4GRWA 1INRA 3QB7A 4BBRD 5L6YC 2C35A 3BESL 3HOYD 4BBSD 4IKVA 2JA5D 4QIQA 4YUEC 4YQXA 2PSMA 1ITLA 4DKEA 3DI2A 2R7ZD 1Y6ML 1LKIA 2HYMB 1D9GA 5LQBA 2B8YA 1EVSA 1PGRA 5D71A 1HWGA 1Z7CA 1FG9A 2KZ1A 3PIVA 4OH3A 4GBZA 3EW3A 4BY1D 4A3BD 4WRLB 3MZGA 4J05A 3HMXB 4DOHA 3HOXD 4YPGC 5IYCD 4DKDA 4A3DD 4CNIC 1N1FA 4A3ID 2ILKA 1ITFA 2Q7NB 3O7PA 1GNCA 5TS9A 3AYHA 2JA8D 4YB9D 1Y6KL 3NCCA 4OAAA 1IARA 1AXIA 4FA8E 2V8NA 3HOWD 3L5XA 1PW6A 5IP7D 1BCNA 1M49A 3H3VE 4XNIA 4U4WA 3SE3B 1IRLA 5D22A 3HHCA 1HWHA 4Z5RD 4GS7A 4TPHA 1HIJA 1LQSL 3D87A 3I4ND 1B5LA 3LB6B 3DLQI 4NN6A 1SCFA 2O26A 3NCBA 4MHLA 3UX9A 1HGUA 1LK3A 4JR9A 2CFQA 2Z3QA 2D48A 4IU8A 3D48P 2R92D 1IK0A 1J7VL 5D6KA 1BBNA 4TPGA 3IRHA 4I77Z 1CN4C 1PVHB 4A3MD 4A3LD 3G6DA 1IJZA 1WU3I 1BP3A 5C65A 4LDSA 4NN7A 1JLIA 4APSA 1PW4A 1BGEA 2B8ZA 1QVNA 4DKCA 5E4EA 3WCYI 2B8XA 4D2CA 3Q1SI 4PYPA 4RS1A 3UF2A 2XUTA 1F6FA 1BUYA 2JA6D 4IKXA 3PO3D 3DGCL 5D58A 4LRLA 3QB1A 2B8UA 2VUMD 4NEJA 2LAGA 2Z3RA 1NBPA 1PV7A 1EMRA 3LB6A 1EKUA 1ITIA 5KNHI 1M48A 3DUHC 1RFBA 1A7MA 2INTA 5C3ED 1CYLA 1EXZA 2IL6A 4Q65A 4EXPA 4A3JD 3HOZD 3NCEA 4IU9A 3PO2D 4BY7D 4PS4A 1AX8A 1RW5A 3B5KA 5D28B 1F45B 4A3GD 1ITMA 1A22A 4A3FD 4A3CD 4A3KD 1EERA 3OG6A 3N06A 3HHRA 1GA3A 2B91A 4YDYI 3HOVD 1M4BA 1AU1A 4D2DA 5FLMD 1PY2A 1CD9A 1ETEA 5D72A 4U4TA 3D85C
chains in the Genus database with same CATH topology
1Z7CA 1IJZA 1FG9A 1Y14A 2KZ1A 3NCFA 3PIVA 3G9VB 3SE4B 1WU3I 1HULA 3BPLA 1BP3A 4NI9A 4EXNA 3EW3A 4BY1D 4A3BD 1V7NV 4WRLB 3MZGA 3G6DA 1D9CA 1Y6NL 3HMXB 2JA7D 3L5WI 2L3OA 4NN7A 2Q14A 2B90A 4DOHA 1RHGA 1JLIA 1M4RA 3UF5A 3HOXD 1Y1VD 1BGEA 4YPGC 2B8ZA 1QVNA 2CYKA 4DKCA 2XQBA 3QWRB 5E4EA 2E9WC 2B8XA 2ERJD 1P9MB 2Q98A 3Q1SI 4NI7A 3WCYI 4DKDA 5IYCD 4RS1A 3UF2A 3I4MD 1F6FA 4A3DD 4CNIC 1BUYA 1ALUA 1N1FA 1V7MV 2B5IA 3BPNA 4A3ID 2JA6D 3PO3D 2ILKA 1ITFA 2Q7NB 3DGCL 5IYDD 1HUWA 2GMFA 1M4CA 1GNCA 2O27A 4LRLA 4O6KA 5D71A 3AYHA 5TS9A 4ZS7A 3VA2A 1M4AA 3INKC 4NN5A 2JA8D 3QB1A 1VLKA 3HOUD 2B8UA 3FKID 1Y6KL 4O9HA 1HIKA 5FUCA 2VUMD 3NCCA 5D28B 4NEJA 1IARA 3TGXB 1AXIA 3UEZE 2LAGA 1M47A 2Z3RA 4FA8E 1NBPA 2R93D 3HOWD 1ILKA 2H24A 3L5XA 1EMRA 1PW6A 5IP9D 3LB6A 1RCBA 1EKUA 5IP7D 3SE3B 1M49A 2L3YA 5C7XA 3H3VE 1BCNA 1ITIA 4J4LC 5KNHI 1M48A 2O6IA 1BGCA 1WCMD 3DUHC 1RFBA 1IRLA 1HZIA 4NEMA 4X51A 3HHCA 5D22A 5D70A 4GRWA 5FHXA 1Z92A 1A7MA 3QT2C 2INTA 3S9DA 4ZF7A 1HWHA 2LMSA 5C3ED 3DI3A 4Z5RD 1CYLA 4GS7A 1IL6A 1EXZA 1I1RB 2IL6A 1KF9A 3OG4A 4EXPA 4A93D 4BXXD 4A3JD 3HOZD 3NCEA 1HIJA 1LQSL 3NPZA 1BGDA 3D87A 4NKQC 3I4ND 3PO2D 4BY7D 4PS4A 1B5LA 1AX8A 1CSGA 1FYHA 5IYBD 3LB6B 1RW5A 1INRA 1F45B 3B5KA 3DLQI 1CNT1 1ITMA 1SCFA 2O26A 1A22A 3QB7A 4NN6A 3NCBA 4BBRD 5L6YC 4MHLA 4A3FD 2C35A 3BESL 3UX9A 5C44D 4A3CD 1HGUA 3HOYD 1LK3A 4BBSD 1YKBA 2JA5D 3EJJA 3QAZA 4A3ED 2D9QA 4YUEC 1EERA 2Z3QA 4A3KD 3OG6A 4DKFA 2B63D 3N06A 4YQXA 3HHRA 2D48A 2PSMA 1GA3A 2B91A 3OQ3A 3D48P 2R92D 1IK0A 1ITLA 1J7VL 4DKEA 3DI2A 4YDYI 3HOVD 2OQPA 2R7ZD 1BBNA 1Y6ML 1M4BA 1LKIA 1AU1A 5C4XD 3IRHA 4I77Z 3H0GD 4A3GD 2HYMB 3N0PA 1CN4C 5FLMD 1D9GA 1PY2A 5LQBA 1CD9A 1PVHB 2B8YA 3PIWA 4A3MD 1EVSA 1ETEA 4A3LD 5D72A 3BPOA 3D85C 1Y1WD 1PGRA 1HWGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BBS D;  2JA5 D;  1Y14 A;  1WCM D;  5IYD D;  4A3E D;  4A3K D;  3AYH A;  2B63 D;  4BY1 D;  4A3B D;  2JA8 D;  5C3E D;  2JA7 D;  2R92 D;  3HOU D;  3HOV D;  3FKI D;  2R7Z D;  4BXX D;  3HOX D;  2VUM D;  4A93 D;  1Y1V D;  5C4X D;  4A3J D;  3HOZ D;  2R93 D;  3H0G D;  5IYC D;  3HOW D;  3I4N D;  5FLM D;  3PO2 D;  4BY7 D;  5IP9 D;  5IYB D;  3I4M D;  5IP7 D;  4A3D D;  3H3V E;  4A3M D;  4A3G D;  4BBR D;  4A3L D;  4A3I D;  2JA6 D;  4A3F D;  2C35 A;  3PO3 D;  5C44 D;  4A3C D;  3HOY D;  1Y1W D; 
#chains in the Genus database with same CATH topology
 1Y14 A;  3G9V B;  3SE4 B;  1HUL A;  4NI9 A;  4IKZ A;  4JRE A;  3L5W I;  2L3O A;  1M4R A;  4ZWC A;  1Y1V D;  2E9W C;  2ERJ D;  2Q98 A;  4LEP A;  3I4M D;  2CFP A;  1ALU A;  2B5I A;  2Y5Y A;  3BPN A;  5EQG A;  1HUW A;  2GMF A;  1M4C A;  4O6K A;  4ZS7 A;  3INK C;  4JA3 A;  4ZYR A;  5FUC A;  1M47 A;  5IP9 D;  1RCB A;  5C7X A;  4J4L C;  1PV6 A;  4UVM A;  4NEM A;  1HZI A;  4X51 A;  1Z92 A;  4ZF7 A;  5D59 A;  2LMS A;  3DI3 A;  1IL6 A;  1I1R B;  3OG4 A;  4BXX D;  1FYH A;  5IYB D;  4GBY A;  1CNT 1;  5C44 D;  5A2O A;  1YKB A;  3EJJ A;  3QAZ A;  4A3E D;  2D9Q A;  4DKF A;  2B63 D;  3OQ3 A;  2OQP A;  5C4X D;  3H0G D;  3N0P A;  4TPJ A;  3PIW A;  3BPO A;  1Y1W D;  3NCF A;  4ZWB A;  3BPL A;  4EXN A;  1V7N V;  4IKY A;  5EQI A;  4ZW9 A;  1D9C A;  1Y6N L;  4IKW A;  2JA7 D;  2Q14 A;  2B90 A;  1RHG A;  3UF5 A;  5A2N A;  2CYK A;  2XQB A;  3QWR B;  1P9M B;  4NI7 A;  1V7M V;  5IYD D;  4GC0 A;  2O27 A;  4XNJ A;  3VA2 A;  1M4A A;  4NN5 A;  4W6V A;  1VLK A;  3HOU D;  3FKI D;  4O9H A;  1HIK A;  3TGX B;  3UEZ E;  4D2B A;  2R93 D;  1ILK A;  2H24 A;  3WDO A;  5GXB A;  2L3Y A;  5EQH A;  2O6I A;  1BGC A;  1WCM D;  5D70 A;  5FHX A;  3QT2 C;  3S9D A;  4U4V A;  4YBQ A;  1KF9 A;  4A93 D;  4NKQ C;  3NPZ A;  1BGD A;  1CSG A;  3O7Q A;  4GRW A;  1INR A;  3QB7 A;  4BBR D;  5L6Y C;  2C35 A;  3BES L;  3HOY D;  4BBS D;  4IKV A;  2JA5 D;  4QIQ A;  4YUE C;  4YQX A;  2PSM A;  1ITL A;  4DKE A;  3DI2 A;  2R7Z D;  1Y6M L;  1LKI A;  2HYM B;  1D9G A;  5LQB A;  2B8Y A;  1EVS A;  1PGR A;  5D71 A;  1HWG A;  1Z7C A;  1FG9 A;  2KZ1 A;  3PIV A;  4OH3 A;  4GBZ A;  3EW3 A;  4BY1 D;  4A3B D;  4WRL B;  3MZG A;  4J05 A;  3HMX B;  4DOH A;  3HOX D;  4YPG C;  5IYC D;  4DKD A;  4A3D D;  4CNI C;  1N1F A;  4A3I D;  2ILK A;  1ITF A;  2Q7N B;  3O7P A;  1GNC A;  5TS9 A;  3AYH A;  2JA8 D;  4YB9 D;  1Y6K L;  3NCC A;  4OAA A;  1IAR A;  1AXI A;  4FA8 E;  2V8N A;  3HOW D;  3L5X A;  1PW6 A;  5IP7 D;  1BCN A;  1M49 A;  3H3V E;  4XNI A;  4U4W A;  3SE3 B;  1IRL A;  5D22 A;  3HHC A;  1HWH A;  4Z5R D;  4GS7 A;  4TPH A;  1HIJ A;  1LQS L;  3D87 A;  3I4N D;  1B5L A;  3LB6 B;  3DLQ I;  4NN6 A;  1SCF A;  2O26 A;  3NCB A;  4MHL A;  3UX9 A;  1HGU A;  1LK3 A;  4JR9 A;  2CFQ A;  2Z3Q A;  2D48 A;  4IU8 A;  3D48 P;  2R92 D;  1IK0 A;  1J7V L;  5D6K A;  1BBN A;  4TPG A;  3IRH A;  4I77 Z;  1CN4 C;  1PVH B;  4A3M D;  4A3L D;  3G6D A;  1IJZ A;  1WU3 I;  1BP3 A;  5C65 A;  4LDS A;  4NN7 A;  1JLI A;  4APS A;  1PW4 A;  1BGE A;  2B8Z A;  1QVN A;  4DKC A;  5E4E A;  3WCY I;  2B8X A;  4D2C A;  3Q1S I;  4PYP A;  4RS1 A;  3UF2 A;  2XUT A;  1F6F A;  1BUY A;  2JA6 D;  4IKX A;  3PO3 D;  3DGC L;  5D58 A;  4LRL A;  3QB1 A;  2B8U A;  2VUM D;  4NEJ A;  2LAG A;  2Z3R A;  1NBP A;  1PV7 A;  1EMR A;  3LB6 A;  1EKU A;  1ITI A;  5KNH I;  1M48 A;  3DUH C;  1RFB A;  1A7M A;  2INT A;  5C3E D;  1CYL A;  1EXZ A;  2IL6 A;  4Q65 A;  4EXP A;  4A3J D;  3HOZ D;  3NCE A;  4IU9 A;  3PO2 D;  4BY7 D;  4PS4 A;  1AX8 A;  1RW5 A;  3B5K A;  5D28 B;  1F45 B;  4A3G D;  1ITM A;  1A22 A;  4A3F D;  4A3C D;  4A3K D;  1EER A;  3OG6 A;  3N06 A;  3HHR A;  1GA3 A;  2B91 A;  4YDY I;  3HOV D;  1M4B A;  1AU1 A;  4D2D A;  5FLM D;  1PY2 A;  1CD9 A;  1ETE A;  5D72 A;  4U4T A;  3D85 C; 
#chains in the Genus database with same CATH homology
 1Z7C A;  1IJZ A;  1FG9 A;  1Y14 A;  2KZ1 A;  3NCF A;  3PIV A;  3G9V B;  3SE4 B;  1WU3 I;  1HUL A;  3BPL A;  1BP3 A;  4NI9 A;  4EXN A;  3EW3 A;  4BY1 D;  4A3B D;  1V7N V;  4WRL B;  3MZG A;  3G6D A;  1D9C A;  1Y6N L;  3HMX B;  2JA7 D;  3L5W I;  2L3O A;  4NN7 A;  2Q14 A;  2B90 A;  4DOH A;  1RHG A;  1JLI A;  1M4R A;  3UF5 A;  3HOX D;  1Y1V D;  1BGE A;  4YPG C;  2B8Z A;  1QVN A;  2CYK A;  4DKC A;  2XQB A;  3QWR B;  5E4E A;  2E9W C;  2B8X A;  2ERJ D;  1P9M B;  2Q98 A;  3Q1S I;  4NI7 A;  3WCY I;  4DKD A;  5IYC D;  4RS1 A;  3UF2 A;  3I4M D;  1F6F A;  4A3D D;  4CNI C;  1BUY A;  1ALU A;  1N1F A;  1V7M V;  2B5I A;  3BPN A;  4A3I D;  2JA6 D;  3PO3 D;  2ILK A;  1ITF A;  2Q7N B;  3DGC L;  5IYD D;  1HUW A;  2GMF A;  1M4C A;  1GNC A;  2O27 A;  4LRL A;  4O6K A;  5D71 A;  3AYH A;  5TS9 A;  4ZS7 A;  3VA2 A;  1M4A A;  3INK C;  4NN5 A;  2JA8 D;  3QB1 A;  1VLK A;  3HOU D;  2B8U A;  3FKI D;  1Y6K L;  4O9H A;  1HIK A;  5FUC A;  2VUM D;  3NCC A;  5D28 B;  4NEJ A;  1IAR A;  3TGX B;  1AXI A;  3UEZ E;  2LAG A;  1M47 A;  2Z3R A;  4FA8 E;  1NBP A;  2R93 D;  3HOW D;  1ILK A;  2H24 A;  3L5X A;  1EMR A;  1PW6 A;  5IP9 D;  3LB6 A;  1RCB A;  1EKU A;  5IP7 D;  3SE3 B;  1M49 A;  2L3Y A;  5C7X A;  3H3V E;  1BCN A;  1ITI A;  4J4L C;  5KNH I;  1M48 A;  2O6I A;  1BGC A;  1WCM D;  3DUH C;  1RFB A;  1IRL A;  1HZI A;  4NEM A;  4X51 A;  3HHC A;  5D22 A;  5D70 A;  4GRW A;  5FHX A;  1Z92 A;  1A7M A;  3QT2 C;  2INT A;  3S9D A;  4ZF7 A;  1HWH A;  2LMS A;  5C3E D;  3DI3 A;  4Z5R D;  1CYL A;  4GS7 A;  1IL6 A;  1EXZ A;  1I1R B;  2IL6 A;  1KF9 A;  3OG4 A;  4EXP A;  4A93 D;  4BXX D;  4A3J D;  3HOZ D;  3NCE A;  1HIJ A;  1LQS L;  3NPZ A;  1BGD A;  3D87 A;  4NKQ C;  3I4N D;  3PO2 D;  4BY7 D;  4PS4 A;  1B5L A;  1AX8 A;  1CSG A;  1FYH A;  5IYB D;  3LB6 B;  1RW5 A;  1INR A;  1F45 B;  3B5K A;  3DLQ I;  1CNT 1;  1ITM A;  1SCF A;  2O26 A;  1A22 A;  3QB7 A;  4NN6 A;  3NCB A;  4BBR D;  5L6Y C;  4MHL A;  4A3F D;  2C35 A;  3BES L;  3UX9 A;  5C44 D;  4A3C D;  1HGU A;  3HOY D;  1LK3 A;  4BBS D;  1YKB A;  2JA5 D;  3EJJ A;  3QAZ A;  4A3E D;  2D9Q A;  4YUE C;  1EER A;  2Z3Q A;  4A3K D;  3OG6 A;  4DKF A;  2B63 D;  3N06 A;  4YQX A;  3HHR A;  2D48 A;  2PSM A;  1GA3 A;  2B91 A;  3OQ3 A;  3D48 P;  2R92 D;  1IK0 A;  1ITL A;  1J7V L;  4DKE A;  3DI2 A;  4YDY I;  3HOV D;  2OQP A;  2R7Z D;  1BBN A;  1Y6M L;  1M4B A;  1LKI A;  1AU1 A;  5C4X D;  3IRH A;  4I77 Z;  3H0G D;  4A3G D;  2HYM B;  3N0P A;  1CN4 C;  5FLM D;  1D9G A;  1PY2 A;  5LQB A;  1CD9 A;  1PVH B;  2B8Y A;  3PIW A;  4A3M D;  1EVS A;  1ETE A;  4A3L D;  5D72 A;  3BPO A;  3D85 C;  1Y1W D;  1PGR A;  1HWG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...