2R8FA

Crystal structure of h225a nsp2 and atp-gs complex
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
312
structure length
307
Chain Sequence
AELACFCYPHLENDSYKFIPFNNLAIKAMLTAKVDKKDMDKFYDSIIYGIAPPPQFKKRYNTNDNSRGMNFETIMFTKVAMLICEALNSLKVTQANVSNVLSRVVSIRHLENLVIRKENPQDILFHSKDLLLKSTLIAIGQSKEIETTITAEGGEIVFQNAAFTMWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELVAELRWQYNKFAVITHGKGAYRIVKYSSVANHADRVYATFKSNVNDFNLLDQRIIWQNWYAFTSSMKQGNTLDVCKRLLFQKMKPEKNPFKGLSTDRKMDEVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Non-structural RNA-binding protein 35
publication title Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity
pubmed doi rcsb
source organism Simian 11 rotavirus (serotype 3 / strain sa11-ramig)
total genus 93
structure length 307
sequence length 312
ec nomenclature
pdb deposition date 2007-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02509 Rota_NS35 Rotavirus non-structural protein 35
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.20 Alpha Beta 2-Layer Sandwich HIT family, subunit A Rotavirus NSP2 fragment, C-terminal domain 2r8fA02
3.90.1400.10 Alpha Beta Alpha-Beta Complex Rotavirus NSP2 fragment, N-terminal domain Rotavirus NSP2 fragment, N-terminal domain 2r8fA01
2R7PA 2GU0A 4G0AA 2R7CA 1L9VA 2R7JA 2R8FA 4G0JA
chains in the Genus database with same CATH superfamily
1KPEA 3SPDA 3QGZA 1ST0A 4EQHA 5RHNA 2LJWA 3O1ZA 1HXQA 3OJ7A 4NJYA 4ZKVA 5ED6A 2R7PA 4QEBA 3KSVA 4FITA 3FITA 5IPEA 3I24A 4NDGA 2R7JA 2R8FA 4EGUA 4NDFA 4RHNA 1EMSA 1L9VA 5FITA 1ZWJA 2EO4A 4YKLB 4I5VA 4I5TA 1FHIA 5ED3A 1ST4A 5IPDA 3SZQA 5I2FA 3BLAA 4G0JA 3OHEA 1Z84A 6RHNA 3IMIA 3BL9A 5EMTA 4EQEA 1GUQA 1Y23A 2GU0A 3N1SA 1VLRA 3WO5A 3LB5A 1FITA 4NDIA 4QDEA 2OIKA 1KPBA 4QDVA 4G0AA 3BL7A 3SP4A 4NDHA 4ZKLA 2H39A 4NJZA 6FITA 4ZGLA 2Q4LA 4NK0A 3R6FA 5I2EA 3N1TA 2FHIA 1AV5A 3OXKA 4INCA 2POFA 4I5WA 4INIA 5IN3A 1XMMA 3L7XA 3P0TA 1KPAA 2FITA 3O1XA 3NRDA 3I4SA 1XMLA 2R7CA 1HXPA 5IPBA 3ANOA 1GUPA 3O1CA 5CS2A 5BV3A 1KPCA 3O0MA 3OMFA 3SPLA 1KPFA 3TW2A 5IPCA 3RHNA 4XBAA 2Q4HA 4EQGA 1RZYA 4NJXA
chains in the Genus database with same CATH topology
2R7PA 2GU0A 4G0AA 2R7CA 1L9VA 2R7JA 2R8FA 4G0JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R7P A;  2GU0 A;  4G0A A;  2R7C A;  1L9V A;  2R7J A;  2R8F A;  4G0J A; 
#chains in the Genus database with same CATH topology
 1KPE A;  3SPD A;  3QGZ A;  1ST0 A;  4EQH A;  5RHN A;  2LJW A;  3O1Z A;  1HXQ A;  3OJ7 A;  4NJY A;  4ZKV A;  5ED6 A;  2R7P A;  4QEB A;  3KSV A;  4FIT A;  3FIT A;  5IPE A;  3I24 A;  4NDG A;  2R7J A;  2R8F A;  4EGU A;  4NDF A;  4RHN A;  1EMS A;  1L9V A;  5FIT A;  1ZWJ A;  2EO4 A;  4YKL B;  4I5V A;  4I5T A;  1FHI A;  5ED3 A;  1ST4 A;  5IPD A;  3SZQ A;  5I2F A;  3BLA A;  4G0J A;  3OHE A;  1Z84 A;  6RHN A;  3IMI A;  3BL9 A;  5EMT A;  4EQE A;  1GUQ A;  1Y23 A;  2GU0 A;  3N1S A;  1VLR A;  3WO5 A;  3LB5 A;  1FIT A;  4NDI A;  4QDE A;  2OIK A;  1KPB A;  4QDV A;  4G0A A;  3BL7 A;  3SP4 A;  4NDH A;  4ZKL A;  2H39 A;  4NJZ A;  6FIT A;  4ZGL A;  2Q4L A;  4NK0 A;  3R6F A;  5I2E A;  3N1T A;  2FHI A;  1AV5 A;  3OXK A;  4INC A;  2POF A;  4I5W A;  4INI A;  5IN3 A;  1XMM A;  3L7X A;  3P0T A;  1KPA A;  2FIT A;  3O1X A;  3NRD A;  3I4S A;  1XML A;  2R7C A;  1HXP A;  5IPB A;  3ANO A;  1GUP A;  3O1C A;  5CS2 A;  5BV3 A;  1KPC A;  3O0M A;  3OMF A;  3SPL A;  1KPF A;  3TW2 A;  5IPC A;  3RHN A;  4XBA A;  2Q4H A;  4EQG A;  1RZY A;  4NJX A; 
#chains in the Genus database with same CATH homology
 2R7P A;  2GU0 A;  4G0A A;  2R7C A;  1L9V A;  2R7J A;  2R8F A;  4G0J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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