2R92D

Elongation complex of rna polymerase ii with artificial rdrp scaffold
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
219
structure length
178
Chain Sequence
VSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKTREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/rna
molecule keywords RNA (5'-R(*UP*GP*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3
publication title Molecular basis of RNA-dependent RNA polymerase II activity.
pubmed doi rcsb
total genus 44
structure length 178
sequence length 219
ec nomenclature
pdb deposition date 2007-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 2r92D02
5C4XD 1WCMD 4BY7D 4A93D 4A3FD 3HOYD 4A3KD 5IP9D 4A3MD 3FKID 2VUMD 4A3LD 5IYCD 3HOUD 3PO2D 4BBSD 3I4ND 2JA6D 3H3VE 2R93D 2C35A 2JA5D 4A3BD 1Y1VD 5IYBD 1Y14A 3HOXD 1Y1WD 3HOWD 2JA8D 3HOZD 4BXXD 2R92D 5IYDD 3I4MD 4A3JD 3AYHA 2R7ZD 2B63D 4A3GD 4A3ED 4A3DD 5C3ED 2JA7D 3PO3D 3H0GD 5C44D 4BY1D 5FLMD 5IP7D 4A3CD 4A3ID 4BBRD 3HOVD
chains in the Genus database with same CATH superfamily
4YPGC 4A3KD 5A2NA 3HOUD 1HWHA 1RFBA 1Y1VD 4NI7A 3DI2A 4OAAA 4DKFA 4NEJA 3S9DA 3HMXB 3Q1SI 4PS4A 1BCNA 4TPGA 1FYHA 1M48A 1J7VL 1LQSL 3QB1A 5C4XD 1WCMD 1CN4C 4JA3A 4WRLB 4YB9D 4JR9A 4NN7A 2JA5D 1IL6A 2O27A 2PSMA 2Y5YA 4LRLA 5FUCA 1IARA 2E9WC 1Y6KL 1VLKA 4DKEA 1Y6ML 5EQGA 2O6IA 2O26A 1PV7A 4RS1A 3OQ3A 1B5LA 5D71A 1V7NV 5TS9A 1A7MA 1WU3I 1RW5A 4JREA 5EQHA 2H24A 4U4VA 3B5KA 2B8UA 1FG9A 4I77Z 4YDYI 4D2DA 1KF9A 1P9MB 1BBNA 4J4LC 4IU8A 5IYCD 3QAZA 1EXZA 3OG6A 5D72A 1LK3A 4W6VA 1BGDA 3O7QA 3AYHA 4NEMA 4A3GD 5C65A 3PO3D 3BPOA 3N0PA 4DOHA 3L5WI 1YKBA 5L6YC 4A93D 5D58A 1ITLA 4QIQA 1I1RB 4LEPA 4A3BD 5D59A 4IKYA 3HOZD 5FHXA 3QT2C 1M47A 2B91A 1HZIA 3SE3B 1M4BA 1HULA 1BGEA 1BP3A 5IP9D 4GC0A 3WDOA 2OQPA 4NN6A 3G6DA 3OG4A 4ZWCA 4BXXD 3HHRA 4NKQC 4YQXA 4DKDA 3DUHC 5E4EA 3G9VB 5FLMD 3D48P 4ZF7A 4CNIC 1ALUA 1AX8A 5C7XA 3UF2A 1IRLA 3DGCL 3N06A 5A2OA 2CFQA 3PIWA 1F45B 1NBPA 3D85C 2IL6A 1EKUA 1PGRA 3LB6A 5GXBA 4OH3A 4IKVA 1F6FA 2JA6D 2B5IA 2KZ1A 3NCEA 5IYBD 1HGUA 1Z7CA 5D22A 4DKCA 4MHLA 4A3DD 3NCFA 2LMSA 4BY7D 1HUWA 4IKZA 5LQBA 1HIJA 2L3YA 2R93D 2C35A 1PY2A 4LDSA 2HYMB 4A3JD 3EW3A 2B63D 3NCCA 4ZW9A 1HWGA 4A3ID 2D9QA 2B8ZA 4GRWA 1CYLA 4A3FD 1PVHB 1LKIA 3QWRB 2B90A 4FA8E 3VA2A 2ERJD 4TPJA 4EXNA 3UX9A 2Z3RA 4PYPA 2R7ZD 4Z5RD 1GNCA 4BY1D 4A3CD 1EMRA 3DLQI 3I4MD 3SE4B 1ITFA 1GA3A 4XNIA 1JLIA 4A3LD 1N1FA 3I4ND 3H3VE 1A22A 1D9CA 1IK0A 1INRA 1Y6NL 4IKWA 4U4TA 1Y14A 2Q7NB 3HHCA 3UF5A 5IYDD 5D28B 1D9GA 4O6KA 1HIKA 3H0GD 1RHGA 3PIVA 4X51A 1QVNA 4ZWBA 2GMFA 1M4AA 4A3MD 1BUYA 1BGCA 1PW4A 3PO2D 1EVSA 3L5XA 1SCFA 3TGXB 4ZS7A 2B8XA 4Q65A 4EXPA 3HOYD 2INTA 1Z92A 2XUTA 1CNT1 5D70A 4GS7A 4GBZA 3INKC 4TPHA 5C3ED 1EERA 1PW6A 1CD9A 4D2BA 1M49A 3QB7A 5C44D 3MZGA 1IJZA 2VUMD 4IU9A 2B8YA 3IRHA 4NI9A 1V7MV 3BESL 2LAGA 3BPNA 4U4WA 5KNHI 4GBYA 4YUEC 4APSA 4A3ED 5IP7D 3LB6B 4NN5A 4BBRD 2D48A 4D2CA 1AXIA 1ITMA 3WCYI 3DI3A 3FKID 4O9HA 2Q98A 3UEZE 4BBSD 1ETEA 3HOXD 3HOWD 2CYKA 2R92D 2CFPA 1ITIA 2JA7D 4YBQA 1ILKA 2L3OA 5EQIA 1M4RA 2ILKA 4J05A 3BPLA 1M4CA 3D87A 1CSGA 2Z3QA 1RCBA 3O7PA 2Q14A 4IKXA 1Y1WD 2JA8D 1AU1A 3NPZA 3NCBA 4XNJA 4UVMA 4ZYRA 5D6KA 3EJJA 2XQBA 1PV6A 2V8NA 3HOVD
chains in the Genus database with same CATH topology
4YPGC 1YKBA 5L6YC 4BY7D 4A93D 4EXPA 3HOYD 4A3KD 1HUWA 5LQBA 2INTA 1Z92A 3S9DA 3HOUD 1ITLA 1HIJA 1CNT1 1HWHA 2L3YA 1RFBA 5D70A 1I1RB 2C35A 4GS7A 1PY2A 1Y1VD 4A3BD 2R93D 3HOZD 5FHXA 3QT2C 3DI2A 4NI7A 4DKFA 2HYMB 1M47A 2B91A 3INKC 3EW3A 1HZIA 4A3JD 2B63D 5C3ED 3NCCA 4NEJA 3HMXB 1EERA 1PW6A 1CD9A 3Q1SI 4PS4A 1M49A 1FYHA 3QB7A 3SE3B 5C44D 3MZGA 1BCNA 1M4BA 1HULA 1IJZA 1HWGA 1M48A 1J7VL 1BGEA 2D9QA 4A3ID 2VUMD 1LQSL 1BP3A 2B8ZA 3QB1A 4GRWA 5C4XD 1WCMD 1CN4C 1CYLA 4A3FD 1PVHB 1LKIA 5IP9D 3QWRB 4WRLB 2OQPA 2B8YA 2B90A 3IRHA 4NN7A 4NN6A 4FA8E 4NI9A 2JA5D 1V7MV 3BESL 3G6DA 1IL6A 3OG4A 3VA2A 2ERJD 2LAGA 3BPNA 5KNHI 2O27A 2PSMA 4EXNA 4BXXD 4LRLA 3HHRA 4YUEC 3UX9A 2Z3RA 5FUCA 2R7ZD 4NKQC 4A3ED 4YQXA 4DKDA 1IARA 3DUHC 4Z5RD 2E9WC 5E4EA 3G9VB 1GNCA 4BY1D 1Y6KL 1VLKA 4DKEA 5FLMD 5IP7D 1Y6ML 4A3CD 2O6IA 2O26A 3LB6B 3D48P 1EMRA 4NN5A 3DLQI 4BBRD 4ZF7A 3I4MD 2D48A 4RS1A 3OQ3A 3SE4B 4CNIC 1B5LA 1ITFA 1ALUA 1AXIA 1ITMA 1V7NV 5D71A 1JLIA 5TS9A 3WCYI 1AX8A 5C7XA 3DI3A 3UF2A 3FKID 4A3LD 4O9HA 1A7MA 1IRLA 2Q98A 3DGCL 1N1FA 3UEZE 4BBSD 1ETEA 1WU3I 3N06A 3H3VE 3I4ND 1A22A 1D9CA 1IK0A 1INRA 1Y6NL 3PIWA 1RW5A 1Y14A 2Q7NB 1F45B 3HHCA 3UF5A 3HOXD 3HOWD 2CYKA 1NBPA 3D85C 2R92D 5IYDD 1ITIA 5D28B 1D9GA 4O6KA 2H24A 2IL6A 1EKUA 2JA7D 1PGRA 1HIKA 3H0GD 3LB6A 1ILKA 1RHGA 2L3OA 3B5KA 2B8UA 1FG9A 4I77Z 1M4RA 3PIVA 2ILKA 4YDYI 3BPLA 1M4CA 4X51A 1KF9A 1QVNA 3D87A 1P9MB 1CSGA 1M4AA 2GMFA 1BBNA 1F6FA 4J4LC 4A3MD 1BUYA 2Z3QA 1BGCA 5IYCD 1RCBA 3PO2D 2JA6D 2B5IA 2KZ1A 3NCEA 1EVSA 5IYBD 2Q14A 3L5XA 3QAZA 1EXZA 3OG6A 5D72A 1Y1WD 1HGUA 2JA8D 1Z7CA 5D22A 1AU1A 1LK3A 1SCFA 3NCBA 3NPZA 1BGDA 4MHLA 3AYHA 4NEMA 3TGXB 4DKCA 4A3GD 4A3DD 3PO3D 3NCFA 2LMSA 3BPOA 3EJJA 3N0PA 4DOHA 1GA3A 4ZS7A 2XQBA 3L5WI 2B8XA 3HOVD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C4X D;  1WCM D;  4BY7 D;  4A93 D;  4A3F D;  3HOY D;  4A3K D;  5IP9 D;  4A3M D;  3FKI D;  2VUM D;  4A3L D;  5IYC D;  3HOU D;  3PO2 D;  4BBS D;  3I4N D;  2JA6 D;  3H3V E;  2R93 D;  2C35 A;  2JA5 D;  4A3B D;  1Y1V D;  5IYB D;  1Y14 A;  3HOX D;  1Y1W D;  3HOW D;  2JA8 D;  3HOZ D;  4BXX D;  2R92 D;  5IYD D;  3I4M D;  4A3J D;  3AYH A;  2R7Z D;  2B63 D;  4A3G D;  4A3E D;  4A3D D;  5C3E D;  2JA7 D;  3PO3 D;  3H0G D;  5C44 D;  4BY1 D;  5FLM D;  5IP7 D;  4A3C D;  4A3I D;  4BBR D;  3HOV D; 
#chains in the Genus database with same CATH topology
 4YPG C;  4A3K D;  5A2N A;  3HOU D;  1HWH A;  1RFB A;  1Y1V D;  4NI7 A;  3DI2 A;  4OAA A;  4DKF A;  4NEJ A;  3S9D A;  3HMX B;  3Q1S I;  4PS4 A;  1BCN A;  4TPG A;  1FYH A;  1M48 A;  1J7V L;  1LQS L;  3QB1 A;  5C4X D;  1WCM D;  1CN4 C;  4JA3 A;  4WRL B;  4YB9 D;  4JR9 A;  4NN7 A;  2JA5 D;  1IL6 A;  2O27 A;  2PSM A;  2Y5Y A;  4LRL A;  5FUC A;  1IAR A;  2E9W C;  1Y6K L;  1VLK A;  4DKE A;  1Y6M L;  5EQG A;  2O6I A;  2O26 A;  1PV7 A;  4RS1 A;  3OQ3 A;  1B5L A;  5D71 A;  1V7N V;  5TS9 A;  1A7M A;  1WU3 I;  1RW5 A;  4JRE A;  5EQH A;  2H24 A;  4U4V A;  3B5K A;  2B8U A;  1FG9 A;  4I77 Z;  4YDY I;  4D2D A;  1KF9 A;  1P9M B;  1BBN A;  4J4L C;  4IU8 A;  5IYC D;  3QAZ A;  1EXZ A;  3OG6 A;  5D72 A;  1LK3 A;  4W6V A;  1BGD A;  3O7Q A;  3AYH A;  4NEM A;  4A3G D;  5C65 A;  3PO3 D;  3BPO A;  3N0P A;  4DOH A;  3L5W I;  1YKB A;  5L6Y C;  4A93 D;  5D58 A;  1ITL A;  4QIQ A;  1I1R B;  4LEP A;  4A3B D;  5D59 A;  4IKY A;  3HOZ D;  5FHX A;  3QT2 C;  1M47 A;  2B91 A;  1HZI A;  3SE3 B;  1M4B A;  1HUL A;  1BGE A;  1BP3 A;  5IP9 D;  4GC0 A;  3WDO A;  2OQP A;  4NN6 A;  3G6D A;  3OG4 A;  4ZWC A;  4BXX D;  3HHR A;  4NKQ C;  4YQX A;  4DKD A;  3DUH C;  5E4E A;  3G9V B;  5FLM D;  3D48 P;  4ZF7 A;  4CNI C;  1ALU A;  1AX8 A;  5C7X A;  3UF2 A;  1IRL A;  3DGC L;  3N06 A;  5A2O A;  2CFQ A;  3PIW A;  1F45 B;  1NBP A;  3D85 C;  2IL6 A;  1EKU A;  1PGR A;  3LB6 A;  5GXB A;  4OH3 A;  4IKV A;  1F6F A;  2JA6 D;  2B5I A;  2KZ1 A;  3NCE A;  5IYB D;  1HGU A;  1Z7C A;  5D22 A;  4DKC A;  4MHL A;  4A3D D;  3NCF A;  2LMS A;  4BY7 D;  1HUW A;  4IKZ A;  5LQB A;  1HIJ A;  2L3Y A;  2R93 D;  2C35 A;  1PY2 A;  4LDS A;  2HYM B;  4A3J D;  3EW3 A;  2B63 D;  3NCC A;  4ZW9 A;  1HWG A;  4A3I D;  2D9Q A;  2B8Z A;  4GRW A;  1CYL A;  4A3F D;  1PVH B;  1LKI A;  3QWR B;  2B90 A;  4FA8 E;  3VA2 A;  2ERJ D;  4TPJ A;  4EXN A;  3UX9 A;  2Z3R A;  4PYP A;  2R7Z D;  4Z5R D;  1GNC A;  4BY1 D;  4A3C D;  1EMR A;  3DLQ I;  3I4M D;  3SE4 B;  1ITF A;  1GA3 A;  4XNI A;  1JLI A;  4A3L D;  1N1F A;  3I4N D;  3H3V E;  1A22 A;  1D9C A;  1IK0 A;  1INR A;  1Y6N L;  4IKW A;  4U4T A;  1Y14 A;  2Q7N B;  3HHC A;  3UF5 A;  5IYD D;  5D28 B;  1D9G A;  4O6K A;  1HIK A;  3H0G D;  1RHG A;  3PIV A;  4X51 A;  1QVN A;  4ZWB A;  2GMF A;  1M4A A;  4A3M D;  1BUY A;  1BGC A;  1PW4 A;  3PO2 D;  1EVS A;  3L5X A;  1SCF A;  3TGX B;  4ZS7 A;  2B8X A;  4Q65 A;  4EXP A;  3HOY D;  2INT A;  1Z92 A;  2XUT A;  1CNT 1;  5D70 A;  4GS7 A;  4GBZ A;  3INK C;  4TPH A;  5C3E D;  1EER A;  1PW6 A;  1CD9 A;  4D2B A;  1M49 A;  3QB7 A;  5C44 D;  3MZG A;  1IJZ A;  2VUM D;  4IU9 A;  2B8Y A;  3IRH A;  4NI9 A;  1V7M V;  3BES L;  2LAG A;  3BPN A;  4U4W A;  5KNH I;  4GBY A;  4YUE C;  4APS A;  4A3E D;  5IP7 D;  3LB6 B;  4NN5 A;  4BBR D;  2D48 A;  4D2C A;  1AXI A;  1ITM A;  3WCY I;  3DI3 A;  3FKI D;  4O9H A;  2Q98 A;  3UEZ E;  4BBS D;  1ETE A;  3HOX D;  3HOW D;  2CYK A;  2R92 D;  2CFP A;  1ITI A;  2JA7 D;  4YBQ A;  1ILK A;  2L3O A;  5EQI A;  1M4R A;  2ILK A;  4J05 A;  3BPL A;  1M4C A;  3D87 A;  1CSG A;  2Z3Q A;  1RCB A;  3O7P A;  2Q14 A;  4IKX A;  1Y1W D;  2JA8 D;  1AU1 A;  3NPZ A;  3NCB A;  4XNJ A;  4UVM A;  4ZYR A;  5D6K A;  3EJJ A;  2XQB A;  1PV6 A;  2V8N A;  3HOV D; 
#chains in the Genus database with same CATH homology
 4YPG C;  1YKB A;  5L6Y C;  4BY7 D;  4A93 D;  4EXP A;  3HOY D;  4A3K D;  1HUW A;  5LQB A;  2INT A;  1Z92 A;  3S9D A;  3HOU D;  1ITL A;  1HIJ A;  1CNT 1;  1HWH A;  2L3Y A;  1RFB A;  5D70 A;  1I1R B;  2C35 A;  4GS7 A;  1PY2 A;  1Y1V D;  4A3B D;  2R93 D;  3HOZ D;  5FHX A;  3QT2 C;  3DI2 A;  4NI7 A;  4DKF A;  2HYM B;  1M47 A;  2B91 A;  3INK C;  3EW3 A;  1HZI A;  4A3J D;  2B63 D;  5C3E D;  3NCC A;  4NEJ A;  3HMX B;  1EER A;  1PW6 A;  1CD9 A;  3Q1S I;  4PS4 A;  1M49 A;  1FYH A;  3QB7 A;  3SE3 B;  5C44 D;  3MZG A;  1BCN A;  1M4B A;  1HUL A;  1IJZ A;  1HWG A;  1M48 A;  1J7V L;  1BGE A;  2D9Q A;  4A3I D;  2VUM D;  1LQS L;  1BP3 A;  2B8Z A;  3QB1 A;  4GRW A;  5C4X D;  1WCM D;  1CN4 C;  1CYL A;  4A3F D;  1PVH B;  1LKI A;  5IP9 D;  3QWR B;  4WRL B;  2OQP A;  2B8Y A;  2B90 A;  3IRH A;  4NN7 A;  4NN6 A;  4FA8 E;  4NI9 A;  2JA5 D;  1V7M V;  3BES L;  3G6D A;  1IL6 A;  3OG4 A;  3VA2 A;  2ERJ D;  2LAG A;  3BPN A;  5KNH I;  2O27 A;  2PSM A;  4EXN A;  4BXX D;  4LRL A;  3HHR A;  4YUE C;  3UX9 A;  2Z3R A;  5FUC A;  2R7Z D;  4NKQ C;  4A3E D;  4YQX A;  4DKD A;  1IAR A;  3DUH C;  4Z5R D;  2E9W C;  5E4E A;  3G9V B;  1GNC A;  4BY1 D;  1Y6K L;  1VLK A;  4DKE A;  5FLM D;  5IP7 D;  1Y6M L;  4A3C D;  2O6I A;  2O26 A;  3LB6 B;  3D48 P;  1EMR A;  4NN5 A;  3DLQ I;  4BBR D;  4ZF7 A;  3I4M D;  2D48 A;  4RS1 A;  3OQ3 A;  3SE4 B;  4CNI C;  1B5L A;  1ITF A;  1ALU A;  1AXI A;  1ITM A;  1V7N V;  5D71 A;  1JLI A;  5TS9 A;  3WCY I;  1AX8 A;  5C7X A;  3DI3 A;  3UF2 A;  3FKI D;  4A3L D;  4O9H A;  1A7M A;  1IRL A;  2Q98 A;  3DGC L;  1N1F A;  3UEZ E;  4BBS D;  1ETE A;  1WU3 I;  3N06 A;  3H3V E;  3I4N D;  1A22 A;  1D9C A;  1IK0 A;  1INR A;  1Y6N L;  3PIW A;  1RW5 A;  1Y14 A;  2Q7N B;  1F45 B;  3HHC A;  3UF5 A;  3HOX D;  3HOW D;  2CYK A;  1NBP A;  3D85 C;  2R92 D;  5IYD D;  1ITI A;  5D28 B;  1D9G A;  4O6K A;  2H24 A;  2IL6 A;  1EKU A;  2JA7 D;  1PGR A;  1HIK A;  3H0G D;  3LB6 A;  1ILK A;  1RHG A;  2L3O A;  3B5K A;  2B8U A;  1FG9 A;  4I77 Z;  1M4R A;  3PIV A;  2ILK A;  4YDY I;  3BPL A;  1M4C A;  4X51 A;  1KF9 A;  1QVN A;  3D87 A;  1P9M B;  1CSG A;  1M4A A;  2GMF A;  1BBN A;  1F6F A;  4J4L C;  4A3M D;  1BUY A;  2Z3Q A;  1BGC A;  5IYC D;  1RCB A;  3PO2 D;  2JA6 D;  2B5I A;  2KZ1 A;  3NCE A;  1EVS A;  5IYB D;  2Q14 A;  3L5X A;  3QAZ A;  1EXZ A;  3OG6 A;  5D72 A;  1Y1W D;  1HGU A;  2JA8 D;  1Z7C A;  5D22 A;  1AU1 A;  1LK3 A;  1SCF A;  3NCB A;  3NPZ A;  1BGD A;  4MHL A;  3AYH A;  4NEM A;  3TGX B;  4DKC A;  4A3G D;  4A3D D;  3PO3 D;  3NCF A;  2LMS A;  3BPO A;  3EJJ A;  3N0P A;  4DOH A;  1GA3 A;  4ZS7 A;  2XQB A;  3L5W I;  2B8X A;  3HOV D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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