2R93L

Elongation complex of rna polymerase ii with a hepatitis delta virus-derived rna stem loop
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RNA (5'-R(*UP*GP*AP*UP*UP*CP*UP*CP*UP*AP*UP*CP*GP*GP*AP*AP*U
publication title Molecular basis of RNA-dependent RNA polymerase II activity.
pubmed doi rcsb
molecule tags Transferase/rna
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2007-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2r93L00
4AYBP 3FKIL 2WAQP 1SFOL 2WB1P 1I3QL 3S16L 5M5YL 1R9TL 4A3BL 3H3VM 2PMZP 2JA6L 2YU9L 5IP7L 3HOWL 3GTKL 2B63L 3GTJL 4A3CL 4C3IL 5IYDL 4Y7NL 2Y0SP 1TWCL 1K83L 3HOUL 3HOVL 2E2JL 4A93L 5M5XL 3S1RL 3PO3L 3GTOL 1WCML 3RZDL 1TWFL 5M5WL 3S2DL 3GTPL 4A3JL 2JA7L 2R7ZL 4A3FL 1Y1WL 5FJ8L 5C3EL 4C2M1 1I6HL 2JA5L 4BXXL 3S1QL 3S14L 4QIWP 3S17L 3GTGL 4A3EL 1TWHL 3S2HL 4A3ML 5C4XL 4X6AL 2JA8L 2R92L 4BY7L 1Y1VL 5FLML 4BBRL 4A3KL 5IYBL 5M3ML 3I4NL 4A3IL 4A3DL 1I50L 3RZOL 1TWAL 3M4OL 2NVYL 5C4JL 4BY1L 2E2HL 3S1NL 3M3YL 3GTQL 3HOZL 2NVXL 2NVTL 5IYCL 3H0GL 2R93L 2NVQL 3GTML 3CQZL 2VUML 3GTLL 3HKZP 3S1ML 3PO2L 5C44L 3I4ML 4Y52L 1TWGL 3HOYL 3S15L 4A3LL 5IP9L 5M3FL 3K7AL 4A3GL 3HOXL 2E2IL 4BBSL 4C3JL 4C3HL
chains in the Genus database with same CATH superfamily
4G6BA 4AYBP 2Z3RB 1RYTA 2XJVA 7RXNA 3MPSA 1I3QL 1NXEA 1R9TL 3KYVA 3PIO1 2PMZP 3QQCE 2YU9L 2ZIXA 1PFYA 3WWLA 3PIP1 1RWDA 3H97A 3KYUA 8RXNA 2PVEA 2CR8A 4GS7D 1YV1A 2Y0SP 1K83L 3HOUL 2KN9A 4AR6A 1B2OA 1IRNA 5AN9H 3GTOL 3PWFA 3KYWA 5M5WL 2R7ZL 1WJVA 3KYXA 5C3EL 1VCXA 4C2M1 3PZAA 2JA5L 4QIWP 3GTGL 1SMWA 2A68D 2XJQA 1BQ8A 2R92L 1Y1VL 3HJWB 1BQ9A 1R0JA 1S30A 3I4NL 2XJPA 4A3DL 2XJTA 2H12A 3M4OL 5JVG1 4BY1L 2V3BB 5GAEc 5AI2A 1B71A 3H0GL 2JI1A 1VZHA 1RB9A 1FHHA 3S1ML 3PO2L 1YK4A 1R0FA 2KKDA 1R0GA 4K9FA 5DM71 1TWGL 5IP9L 3JR7A 4AHYA 5M3FL 3K7AL 2PPTA 1E8JA 1T9PA 4JAGA 2ERJA 3A44A 1LTLA 2WAQP 1SFOL 3S16L 4JAFA 3H3VM 2HR5A 2M6PA 2JA6L 2C6BA 1QQTA 2B63L 1RDVA 4A3CL 4C3IL 3RZ6A 5IYDL 4AI1A 1T9OA 4AHXA 3J7Y1 1VZGA 5M5XL 3LWRB 3S1RL 1R0HA 3PO3L 3LWVB 1WCML 1TWFL 2PYAA 5IY0A 1RYQA 4A3JL 2JA7L 5EIOC 1IU6A 1Y1WL 4BXXL 4TVMA 2M4VA 1BRFA 4AHZA 1Z92B 2XJUA 5FLML 2A6ED 1DVBA 5M3ML 5MFZA 2AUSB 1RDGA 3P2AA 3J7Z1 5MFPA 6RXNA 3GTQL 2NVTL 4WFN1 3HJYB 4TPUA 4POGA 1SMUA 4POFA 5DM61 3LWQB 4XGHA 4JAEA 1T9QA 2LCQA 3CQZL 4AR3A 2Z3QB 2XJSA 3SS2A 2A69D 2O5JD 5C44L 5GAGc 3S15L 3LWPB 2K2DA 5MGNA 4AI0A 1YUXA 2JI3A 2E2IL 2V0FA 4BBSL 4C3JL 1PZXA 3LNLA 1FHMA 2WB1P 3QVDA 2M6OA 4AI2A 2L0ZA 1C09A 2A6HD 3ZG6A 5GAHc 3HOWL 3K35A 3GTKL 1CADA 4Y7NL 3RYGA 3HOVL 2XJRA 2E2JL 4A93L 5GADc 3NFPI 3PL5A 1LKPA 3RZDL 5EINC 1H7VA 1LKOA 2J9UB 2VL6A 4A3FL 1ODHA 1I6HL 3S1QL 1OWBA 1ZRPA 1QYBA 3PKIA 3IU3I 4A3ML 1NXGA 2JA8L 5H1Sc 2V0EA 2JI2A 3LWOB 2NYDA 2DSXA 1IU5A 3RZOL 2NVYL 1SMMA 5K2ME 5C4JL 3MQKB 1PFUA 3M3YL 1S2ZA 5IYCL 1JYBA 5RXNA 3GTML 2AYJA 2CKAA 1B2JA 1IW7D 2VUML 3GTLL 1NNQA 1BFYA 3PKJA 3I4ML 4LHLA 3HOYL 4A3LL 3KYYA 3H9BA 5AI3A 3HOXL 4ZN3B 4AI3A 3WWNB 4C3HL 1P7PA 2BE5D 3RZTA 2ERSA 3FKIL 3P8BA 5M5YL 4A3BL 5IP7L 5MF6A 3B0AB 3GTJL 4UY81 1R0IA 3MSUA 4XXBB 1TWCL 3LPEB 2CKCA 2MS3A 2GMGA 3FDJA 4B8CD 3H9CA 3S2DL 3GTPL 1LKMA 1OWCA 4ZN1B 5FJ8L 1F4LA 2B5ID 3S14L 3S17L 1DX8A 2M4YA 4JADA 4A3EL 1TWHL 4YWLA 4ME3A 1YK5A 3S2HL 5C4XL 1B13A 1IROA 4U671 4AR5A 4X6AL 2AQCA 4LHNA 4BY7L 1QCVA 1PFWA 4BBRL 4A3KL 4RXNA 2RFKB 4E6YA 4AHWA 1CAAA 5IYBL 1VZIA 4V196 4A3IL 1I50L 1YUZA 1TWAL 5JVH1 2PVXA 2RDVA 2E2HL 3S1NL 3HOZL 2NVXL 2C6AA 2R93L 2NVQL 4YWMA 2PSMC 1PFVA 1S24A 3B08B 2HVYC 2APOB 3HKZP 4AR4A 2EY4E 4Y52L 2QL0A 1BE7A 4A3GL 5MLC3 3H99A 3HAXC 3VPBE
chains in the Genus database with same CATH topology
4AYBP 3FKIL 2WAQP 1SFOL 2WB1P 1I3QL 3S16L 5M5YL 1R9TL 4A3BL 3H3VM 2PMZP 2JA6L 2YU9L 5IP7L 3HOWL 3GTKL 2B63L 3GTJL 4A3CL 4C3IL 5IYDL 4Y7NL 2Y0SP 1TWCL 1K83L 3HOUL 3HOVL 2E2JL 4A93L 5M5XL 3S1RL 3PO3L 3GTOL 1WCML 3RZDL 1TWFL 5M5WL 3S2DL 3GTPL 4A3JL 2JA7L 2R7ZL 4A3FL 1Y1WL 5FJ8L 5C3EL 4C2M1 1I6HL 2JA5L 4BXXL 3S1QL 3S14L 4QIWP 3S17L 3GTGL 4A3EL 1TWHL 3S2HL 4A3ML 5C4XL 4X6AL 2JA8L 2R92L 4BY7L 1Y1VL 5FLML 4BBRL 4A3KL 5IYBL 5M3ML 3I4NL 4A3IL 4A3DL 1I50L 3RZOL 1TWAL 3M4OL 2NVYL 5C4JL 4BY1L 2E2HL 3S1NL 3M3YL 3GTQL 3HOZL 2NVXL 2NVTL 5IYCL 3H0GL 2R93L 2NVQL 3GTML 3CQZL 2VUML 3GTLL 3HKZP 3S1ML 3PO2L 5C44L 3I4ML 4Y52L 1TWGL 3HOYL 3S15L 4A3LL 5IP9L 5M3FL 3K7AL 4A3GL 3HOXL 2E2IL 4BBSL 4C3JL 4C3HL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AYB P;  3FKI L;  2WAQ P;  1SFO L;  2WB1 P;  1I3Q L;  3S16 L;  5M5Y L;  1R9T L;  4A3B L;  3H3V M;  2PMZ P;  2JA6 L;  2YU9 L;  5IP7 L;  3HOW L;  3GTK L;  2B63 L;  3GTJ L;  4A3C L;  4C3I L;  5IYD L;  4Y7N L;  2Y0S P;  1TWC L;  1K83 L;  3HOU L;  3HOV L;  2E2J L;  4A93 L;  5M5X L;  3S1R L;  3PO3 L;  3GTO L;  1WCM L;  3RZD L;  1TWF L;  5M5W L;  3S2D L;  3GTP L;  4A3J L;  2JA7 L;  2R7Z L;  4A3F L;  1Y1W L;  5FJ8 L;  5C3E L;  4C2M 1;  1I6H L;  2JA5 L;  4BXX L;  3S1Q L;  3S14 L;  4QIW P;  3S17 L;  3GTG L;  4A3E L;  1TWH L;  3S2H L;  4A3M L;  5C4X L;  4X6A L;  2JA8 L;  2R92 L;  4BY7 L;  1Y1V L;  5FLM L;  4BBR L;  4A3K L;  5IYB L;  5M3M L;  3I4N L;  4A3I L;  4A3D L;  1I50 L;  3RZO L;  1TWA L;  3M4O L;  2NVY L;  5C4J L;  4BY1 L;  2E2H L;  3S1N L;  3M3Y L;  3GTQ L;  3HOZ L;  2NVX L;  2NVT L;  5IYC L;  3H0G L;  2R93 L;  2NVQ L;  3GTM L;  3CQZ L;  2VUM L;  3GTL L;  3HKZ P;  3S1M L;  3PO2 L;  5C44 L;  3I4M L;  4Y52 L;  1TWG L;  3HOY L;  3S15 L;  4A3L L;  5IP9 L;  5M3F L;  3K7A L;  4A3G L;  3HOX L;  2E2I L;  4BBS L;  4C3J L;  4C3H L; 
#chains in the Genus database with same CATH topology
 4G6B A;  4AYB P;  2Z3R B;  1RYT A;  2XJV A;  7RXN A;  3MPS A;  1I3Q L;  1NXE A;  1R9T L;  3KYV A;  3PIO 1;  2PMZ P;  3QQC E;  2YU9 L;  2ZIX A;  1PFY A;  3WWL A;  3PIP 1;  1RWD A;  3H97 A;  3KYU A;  8RXN A;  2PVE A;  2CR8 A;  4GS7 D;  1YV1 A;  2Y0S P;  1K83 L;  3HOU L;  2KN9 A;  4AR6 A;  1B2O A;  1IRN A;  5AN9 H;  3GTO L;  3PWF A;  3KYW A;  5M5W L;  2R7Z L;  1WJV A;  3KYX A;  5C3E L;  1VCX A;  4C2M 1;  3PZA A;  2JA5 L;  4QIW P;  3GTG L;  1SMW A;  2A68 D;  2XJQ A;  1BQ8 A;  2R92 L;  1Y1V L;  3HJW B;  1BQ9 A;  1R0J A;  1S30 A;  3I4N L;  2XJP A;  4A3D L;  2XJT A;  2H12 A;  3M4O L;  5JVG 1;  4BY1 L;  2V3B B;  5GAE c;  5AI2 A;  1B71 A;  3H0G L;  2JI1 A;  1VZH A;  1RB9 A;  1FHH A;  3S1M L;  3PO2 L;  1YK4 A;  1R0F A;  2KKD A;  1R0G A;  4K9F A;  5DM7 1;  1TWG L;  5IP9 L;  3JR7 A;  4AHY A;  5M3F L;  3K7A L;  2PPT A;  1E8J A;  1T9P A;  4JAG A;  2ERJ A;  3A44 A;  1LTL A;  2WAQ P;  1SFO L;  3S16 L;  4JAF A;  3H3V M;  2HR5 A;  2M6P A;  2JA6 L;  2C6B A;  1QQT A;  2B63 L;  1RDV A;  4A3C L;  4C3I L;  3RZ6 A;  5IYD L;  4AI1 A;  1T9O A;  4AHX A;  3J7Y 1;  1VZG A;  5M5X L;  3LWR B;  3S1R L;  1R0H A;  3PO3 L;  3LWV B;  1WCM L;  1TWF L;  2PYA A;  5IY0 A;  1RYQ A;  4A3J L;  2JA7 L;  5EIO C;  1IU6 A;  1Y1W L;  4BXX L;  4TVM A;  2M4V A;  1BRF A;  4AHZ A;  1Z92 B;  2XJU A;  5FLM L;  2A6E D;  1DVB A;  5M3M L;  5MFZ A;  2AUS B;  1RDG A;  3P2A A;  3J7Z 1;  5MFP A;  6RXN A;  3GTQ L;  2NVT L;  4WFN 1;  3HJY B;  4TPU A;  4POG A;  1SMU A;  4POF A;  5DM6 1;  3LWQ B;  4XGH A;  4JAE A;  1T9Q A;  2LCQ A;  3CQZ L;  4AR3 A;  2Z3Q B;  2XJS A;  3SS2 A;  2A69 D;  2O5J D;  5C44 L;  5GAG c;  3S15 L;  3LWP B;  2K2D A;  5MGN A;  4AI0 A;  1YUX A;  2JI3 A;  2E2I L;  2V0F A;  4BBS L;  4C3J L;  1PZX A;  3LNL A;  1FHM A;  2WB1 P;  3QVD A;  2M6O A;  4AI2 A;  2L0Z A;  1C09 A;  2A6H D;  3ZG6 A;  5GAH c;  3HOW L;  3K35 A;  3GTK L;  1CAD A;  4Y7N L;  3RYG A;  3HOV L;  2XJR A;  2E2J L;  4A93 L;  5GAD c;  3NFP I;  3PL5 A;  1LKP A;  3RZD L;  5EIN C;  1H7V A;  1LKO A;  2J9U B;  2VL6 A;  4A3F L;  1ODH A;  1I6H L;  3S1Q L;  1OWB A;  1ZRP A;  1QYB A;  3PKI A;  3IU3 I;  4A3M L;  1NXG A;  2JA8 L;  5H1S c;  2V0E A;  2JI2 A;  3LWO B;  2NYD A;  2DSX A;  1IU5 A;  3RZO L;  2NVY L;  1SMM A;  5K2M E;  5C4J L;  3MQK B;  1PFU A;  3M3Y L;  1S2Z A;  5IYC L;  1JYB A;  5RXN A;  3GTM L;  2AYJ A;  2CKA A;  1B2J A;  1IW7 D;  2VUM L;  3GTL L;  1NNQ A;  1BFY A;  3PKJ A;  3I4M L;  4LHL A;  3HOY L;  4A3L L;  3KYY A;  3H9B A;  5AI3 A;  3HOX L;  4ZN3 B;  4AI3 A;  3WWN B;  4C3H L;  1P7P A;  2BE5 D;  3RZT A;  2ERS A;  3FKI L;  3P8B A;  5M5Y L;  4A3B L;  5IP7 L;  5MF6 A;  3B0A B;  3GTJ L;  4UY8 1;  1R0I A;  3MSU A;  4XXB B;  1TWC L;  3LPE B;  2CKC A;  2MS3 A;  2GMG A;  3FDJ A;  4B8C D;  3H9C A;  3S2D L;  3GTP L;  1LKM A;  1OWC A;  4ZN1 B;  5FJ8 L;  1F4L A;  2B5I D;  3S14 L;  3S17 L;  1DX8 A;  2M4Y A;  4JAD A;  4A3E L;  1TWH L;  4YWL A;  4ME3 A;  1YK5 A;  3S2H L;  5C4X L;  1B13 A;  1IRO A;  4U67 1;  4AR5 A;  4X6A L;  2AQC A;  4LHN A;  4BY7 L;  1QCV A;  1PFW A;  4BBR L;  4A3K L;  4RXN A;  2RFK B;  4E6Y A;  4AHW A;  1CAA A;  5IYB L;  1VZI A;  4V19 6;  4A3I L;  1I50 L;  1YUZ A;  1TWA L;  5JVH 1;  2PVX A;  2RDV A;  2E2H L;  3S1N L;  3HOZ L;  2NVX L;  2C6A A;  2R93 L;  2NVQ L;  4YWM A;  2PSM C;  1PFV A;  1S24 A;  3B08 B;  2HVY C;  2APO B;  3HKZ P;  4AR4 A;  2EY4 E;  4Y52 L;  2QL0 A;  1BE7 A;  4A3G L;  5MLC 3;  3H99 A;  3HAX C;  3VPB E; 
#chains in the Genus database with same CATH homology
 4AYB P;  3FKI L;  2WAQ P;  1SFO L;  2WB1 P;  1I3Q L;  3S16 L;  5M5Y L;  1R9T L;  4A3B L;  3H3V M;  2PMZ P;  2JA6 L;  2YU9 L;  5IP7 L;  3HOW L;  3GTK L;  2B63 L;  3GTJ L;  4A3C L;  4C3I L;  5IYD L;  4Y7N L;  2Y0S P;  1TWC L;  1K83 L;  3HOU L;  3HOV L;  2E2J L;  4A93 L;  5M5X L;  3S1R L;  3PO3 L;  3GTO L;  1WCM L;  3RZD L;  1TWF L;  5M5W L;  3S2D L;  3GTP L;  4A3J L;  2JA7 L;  2R7Z L;  4A3F L;  1Y1W L;  5FJ8 L;  5C3E L;  4C2M 1;  1I6H L;  2JA5 L;  4BXX L;  3S1Q L;  3S14 L;  4QIW P;  3S17 L;  3GTG L;  4A3E L;  1TWH L;  3S2H L;  4A3M L;  5C4X L;  4X6A L;  2JA8 L;  2R92 L;  4BY7 L;  1Y1V L;  5FLM L;  4BBR L;  4A3K L;  5IYB L;  5M3M L;  3I4N L;  4A3I L;  4A3D L;  1I50 L;  3RZO L;  1TWA L;  3M4O L;  2NVY L;  5C4J L;  4BY1 L;  2E2H L;  3S1N L;  3M3Y L;  3GTQ L;  3HOZ L;  2NVX L;  2NVT L;  5IYC L;  3H0G L;  2R93 L;  2NVQ L;  3GTM L;  3CQZ L;  2VUM L;  3GTL L;  3HKZ P;  3S1M L;  3PO2 L;  5C44 L;  3I4M L;  4Y52 L;  1TWG L;  3HOY L;  3S15 L;  4A3L L;  5IP9 L;  5M3F L;  3K7A L;  4A3G L;  3HOX L;  2E2I L;  4BBS L;  4C3J L;  4C3H L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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