2RBFA

Structure of the ribbon-helix-helix domain of escherichia coli puta (puta52) complexed with operator dna (o2)
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
44
structure length
44
Chain Sequence
TTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/dna
molecule keywords DNA (5'-D(*DTP*DT*DTP*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DC
publication title Structural basis of the transcriptional regulation of the proline utilization regulon by multifunctional PutA.
pubmed doi rcsb
source organism Escherichia coli
total genus 14
structure length 44
sequence length 44
chains with identical sequence B
ec nomenclature ec 1.2.1.88: L-glutamate gamma-semialdehyde dehydrogenase.
pdb deposition date 2007-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2rbfA01
1MNTA 2CAJA 4D8JA 2CA9A 3FMTA 3LGHA 2WVDA 3VW4A 4ME7E 3QOQA 2BJ3A 2BJ9A 2JXGA 2BJ7A 2JXHA 2WVBA 3GXQA 2BJ8A 1BAZA 2BNZA 2KELA 1MYLA 1NLAA 2GPEA 3VEBA 3FT7A 2BSQE 2JXIA 2BA3A 1X93A 1Q5VA 2BJ1A 2RBFA 1PARA 3VEAA 2HZAA 2CPGA 2K29A 2WVEA 2K1OA 2K5JA 2WVFA 2WVCA 3H87C 4HV0A 1EA4A 2H1OE 2HZVA 1B28A 2K9IA 2BNWA 2AY0A 1ARQA 1B01A 4FXEA 1ARRA 1BDVA 2CADA 1BDTA 1MYKA 1U9PA 2CAXA 3OD2A 1P94A 1IRQA 2K6LA 1QTGA
chains in the Genus database with same CATH superfamily
4D8JA 3NNEA 2WVDA 3H5XA 4ME7E 2BJ3A 2JXGA 3UQSA 2WK4A 4LRVA 2JXIA 3FT7A 3NO7A 2B43A 4NRUA 4O4RA 2CPGA 3H87C 2K1OA 3SFUA 4HV0A 1EA4A 4FXEA 2CADA 1Q16A 2UUTA 3OD2A 2UUWA 2CAJA 3VW4A 3FMTA 3LGHA 3SFGA 2JBVA 3UR0A 2BJ9A 2JXHA 2AN7A 2BSQE 2GPEA 4LQ3A 4AAIA 1Q5VA 2BJ1A 2RBFA 1PARA 2WVEA 2HZVA 3G5OA 1B28A 2ADLA 3NAHA 1BDVA 2CKWA 2Q2KA 3BSNA 2CAXA 1P94A 1IRQA 4NRTA 2K6LA 1MNTA 2H3AA 2CA9A 1OG7A 1SH0A 3QOQA 2WVBA 3GXQA 1BAZA 2BNZA 2BA3A 3H5YA 3UPFA 2K29A 2K5JA 2H1OE 2BNWA 3QIDA 1ARRA 1BDTA 1OHNA 1MYKA 1U9PA 4QPXA 3LJPA 1SIWA 2KKEA 1SH2A 2BJ7A 3IR7A 3BSOA 2BJ8A 2A2BA 2KELA 1MYLA 1NLAA 4LQ9A 3VEBA 1X93A 2KOEA 2HZAA 3VEAA 2WVFA 2WVCA 2K9IA 2AY0A 1ARQA 3NAIA 1B01A 1SH3A 4MJWA 1QTGA
chains in the Genus database with same CATH topology
1MNTA 2CAJA 4D8JA 2CA9A 3FMTA 3LGHA 2WVDA 3VW4A 4ME7E 3QOQA 2BJ3A 2BJ9A 2JXGA 2BJ7A 2JXHA 2WVBA 3GXQA 2BJ8A 1BAZA 2BNZA 2KELA 1MYLA 1NLAA 2GPEA 3VEBA 3FT7A 2BSQE 2JXIA 2BA3A 1X93A 1Q5VA 2BJ1A 2RBFA 1PARA 3VEAA 2HZAA 2CPGA 2K29A 2WVEA 2K1OA 2K5JA 2WVFA 2WVCA 3H87C 4HV0A 1EA4A 2H1OE 2HZVA 1B28A 2K9IA 2BNWA 2AY0A 1ARQA 1B01A 4FXEA 1ARRA 1BDVA 2CADA 1BDTA 1MYKA 1U9PA 2CAXA 3OD2A 1P94A 1IRQA 2K6LA 1QTGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MNT A;  2CAJ A;  4D8J A;  2CA9 A;  3FMT A;  3LGH A;  2WVD A;  3VW4 A;  4ME7 E;  3QOQ A;  2BJ3 A;  2BJ9 A;  2JXG A;  2BJ7 A;  2JXH A;  2WVB A;  3GXQ A;  2BJ8 A;  1BAZ A;  2BNZ A;  2KEL A;  1MYL A;  1NLA A;  2GPE A;  3VEB A;  3FT7 A;  2BSQ E;  2JXI A;  2BA3 A;  1X93 A;  1Q5V A;  2BJ1 A;  2RBF A;  1PAR A;  3VEA A;  2HZA A;  2CPG A;  2K29 A;  2WVE A;  2K1O A;  2K5J A;  2WVF A;  2WVC A;  3H87 C;  4HV0 A;  1EA4 A;  2H1O E;  2HZV A;  1B28 A;  2K9I A;  2BNW A;  2AY0 A;  1ARQ A;  1B01 A;  4FXE A;  1ARR A;  1BDV A;  2CAD A;  1BDT A;  1MYK A;  1U9P A;  2CAX A;  3OD2 A;  1P94 A;  1IRQ A;  2K6L A;  1QTG A; 
#chains in the Genus database with same CATH topology
 4D8J A;  3NNE A;  2WVD A;  3H5X A;  4ME7 E;  2BJ3 A;  2JXG A;  3UQS A;  2WK4 A;  4LRV A;  2JXI A;  3FT7 A;  3NO7 A;  2B43 A;  4NRU A;  4O4R A;  2CPG A;  3H87 C;  2K1O A;  3SFU A;  4HV0 A;  1EA4 A;  4FXE A;  2CAD A;  1Q16 A;  2UUT A;  3OD2 A;  2UUW A;  2CAJ A;  3VW4 A;  3FMT A;  3LGH A;  3SFG A;  2JBV A;  3UR0 A;  2BJ9 A;  2JXH A;  2AN7 A;  2BSQ E;  2GPE A;  4LQ3 A;  4AAI A;  1Q5V A;  2BJ1 A;  2RBF A;  1PAR A;  2WVE A;  2HZV A;  3G5O A;  1B28 A;  2ADL A;  3NAH A;  1BDV A;  2CKW A;  2Q2K A;  3BSN A;  2CAX A;  1P94 A;  1IRQ A;  4NRT A;  2K6L A;  1MNT A;  2H3A A;  2CA9 A;  1OG7 A;  1SH0 A;  3QOQ A;  2WVB A;  3GXQ A;  1BAZ A;  2BNZ A;  2BA3 A;  3H5Y A;  3UPF A;  2K29 A;  2K5J A;  2H1O E;  2BNW A;  3QID A;  1ARR A;  1BDT A;  1OHN A;  1MYK A;  1U9P A;  4QPX A;  3LJP A;  1SIW A;  2KKE A;  1SH2 A;  2BJ7 A;  3IR7 A;  3BSO A;  2BJ8 A;  2A2B A;  2KEL A;  1MYL A;  1NLA A;  4LQ9 A;  3VEB A;  1X93 A;  2KOE A;  2HZA A;  3VEA A;  2WVF A;  2WVC A;  2K9I A;  2AY0 A;  1ARQ A;  3NAI A;  1B01 A;  1SH3 A;  4MJW A;  1QTG A; 
#chains in the Genus database with same CATH homology
 1MNT A;  2CAJ A;  4D8J A;  2CA9 A;  3FMT A;  3LGH A;  2WVD A;  3VW4 A;  4ME7 E;  3QOQ A;  2BJ3 A;  2BJ9 A;  2JXG A;  2BJ7 A;  2JXH A;  2WVB A;  3GXQ A;  2BJ8 A;  1BAZ A;  2BNZ A;  2KEL A;  1MYL A;  1NLA A;  2GPE A;  3VEB A;  3FT7 A;  2BSQ E;  2JXI A;  2BA3 A;  1X93 A;  1Q5V A;  2BJ1 A;  2RBF A;  1PAR A;  3VEA A;  2HZA A;  2CPG A;  2K29 A;  2WVE A;  2K1O A;  2K5J A;  2WVF A;  2WVC A;  3H87 C;  4HV0 A;  1EA4 A;  2H1O E;  2HZV A;  1B28 A;  2K9I A;  2BNW A;  2AY0 A;  1ARQ A;  1B01 A;  4FXE A;  1ARR A;  1BDV A;  2CAD A;  1BDT A;  1MYK A;  1U9P A;  2CAX A;  3OD2 A;  1P94 A;  1IRQ A;  2K6L A;  1QTG A; 
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similar chains in the Genus database (?% sequence similarity)
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