2RJRA

Substrate mimic bound to sgtam
Total Genus 209
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
209
sequence length
526
structure length
525
Chain Sequence
PVSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGDLAPLSHVASTLIGEGYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSGDPGLHSGFAGAQYPATALVAENRTIGPASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVDRYMADDIELVADALSRGEFLRAIARETDIQLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
source organism Streptomyces globisporus
publication title Design and characterization of mechanism-based inhibitors for the tyrosine aminomutase SgTAM.
pubmed doi rcsb
molecule keywords Tyrosine aminomutase
total genus 209
structure length 525
sequence length 526
chains with identical sequence B
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2007-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2rjrA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2rjrA02
2YIIA 3NO9A 1U16A 2FUSA 2VD6A 1TJWA 5EYTA 3R6QA 1Y2MA 3BHGA 1K62A 1FUOA 4FLCA 4HGVA 4C5SA 2HVGA 1B8FA 3GTDA 4EEIA 3NZ4A 2PFMA 4NSLA 5HW2A 4V2QA 4C6GA 5F92A 1C3CA 4BABA 2O78A 1I0AA 1YISA 4MX2A 1TJUA 1EB4A 4APAA 1JSWA 1TJVA 2RJRA 2O7DA 2PTSA 3OCFA 2PTRA 1T6JA 1YFMA 5EYVA 2X75A 1GK3A 4CQ5A 3RD8A 4BAAA 1C3UA 1DCNA 1YFEA 5D6BA 1FUQA 2O6YA 1RE5A 3UNVA 1TJ7A 3OCEA 3CZOA 4C5UA 2J91A 2QGAB 1J3UA 4ADMA 4V2RA 4APBA 5F91A 2NYNA 4EFCA 3R6YA 3KDZA 2NYFA 3TV2A 1HY1A 1Q5NA 4ADLA 3KDYA 2PTQA 4NLEA 1XWOA 1HY0A 2RJSA 1T6PA 1AUWA 1FURA 2QVEA 3R6VA 3RRPA 3E04A 1W27A 1GKMA 2OHYA 1DOFA 2O7EA 1VDKA 1FUPA 1K7WA 4C5RA 1KQ7A 3C8TA 2E9FA 1GKJA 4FFXA 1GK2A 2O7FA 3QBPA 1U15A 2O7BA 3GZHA
chains in the Genus database with same CATH superfamily
2YIIA 3NO9A 1U16A 2FUSA 2VD6A 1TJWA 5EYTA 3R6QA 1Y2MA 3BHGA 1K62A 1FUOA 4FLCA 4HGVA 4C5SA 2HVGA 1B8FA 3GTDA 4EEIA 3NZ4A 2PFMA 4NSLA 5HW2A 4V2QA 4C6GA 5F92A 1C3CA 4BABA 2O78A 1I0AA 1YISA 4MX2A 1XL8A 4WNLA 1TJUA 3CRW1 1EB4A 4APAA 5M0JA 1TJVA 2RJRA 2O7DA 2PTSA 3OCFA 2PTRA 1T6JA 1YFMA 5EYVA 5M0IA 2X75A 1GK3A 4CQ5A 3RD8A 4BAAA 1C3UA 4A15A 1DCNA 1YFEA 5D6BA 1FUQA 2O6YA 1RE5A 3UNVA 2FELA 1TJ7A 3OCEA 3CZOA 4C5UA 2J91A 2QGAB 1J3UA 4ADMA 4V2RA 4APBA 2VL7A 5F91A 3GZHA 2NYNA 4EFCA 3R6YA 3KDZA 2NYFA 3TV2A 1HY1A 1Q5NA 4ADLA 3KDYA 2PTQA 4NLEA 1XWOA 1HY0A 2RJSA 1T6PA 1AUWA 1FURA 2QVEA 3R6VA 3RRPA 2VSFA 3E04A 1W27A 2FENA 1GKMA 2OHYA 1DOFA 1XL7A 2O7EA 5H8WA 1VDKA 1FUPA 1K7WA 4C5RA 1KQ7A 3C8TA 2E9FA 1GKJA 3CRVA 4FFXA 1GK2A 2O7FA 1XMCA 3QBPA 1U15A 1XMDA 1XLYA 2O7BA 1JSWA
chains in the Genus database with same CATH topology
2YIIA 3NO9A 1U16A 2FUSA 2VD6A 1TJWA 5EYTA 3R6QA 1Y2MA 3BHGA 1K62A 1FUOA 4FLCA 4HGVA 4C5SA 2HVGA 1B8FA 3GTDA 4EEIA 3NZ4A 2PFMA 4NSLA 5HW2A 4V2QA 4C6GA 5F92A 1C3CA 4BABA 2O78A 1I0AA 1YISA 4MX2A 1TJUA 1EB4A 4APAA 1JSWA 1TJVA 2RJRA 2O7DA 2PTSA 3OCFA 2PTRA 1T6JA 1YFMA 5EYVA 2X75A 1GK3A 4CQ5A 3RD8A 4BAAA 1C3UA 1DCNA 1YFEA 5D6BA 1FUQA 2O6YA 1RE5A 3UNVA 1TJ7A 3OCEA 3CZOA 4C5UA 2J91A 2QGAB 1J3UA 4ADMA 4V2RA 4APBA 5F91A 2NYNA 4EFCA 3R6YA 3KDZA 2NYFA 3TV2A 1HY1A 1Q5NA 4ADLA 3KDYA 2PTQA 4NLEA 1XWOA 1HY0A 2RJSA 1T6PA 1AUWA 1FURA 2QVEA 3R6VA 3RRPA 3E04A 1W27A 1GKMA 2OHYA 1DOFA 2O7EA 1VDKA 1FUPA 1K7WA 4C5RA 1KQ7A 3C8TA 2E9FA 1GKJA 4FFXA 1GK2A 2O7FA 3QBPA 1U15A 2O7BA 3GZHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YII A;  3NO9 A;  1U16 A;  2FUS A;  2VD6 A;  1TJW A;  5EYT A;  3R6Q A;  1Y2M A;  3BHG A;  1K62 A;  1FUO A;  4FLC A;  4HGV A;  4C5S A;  2HVG A;  1B8F A;  3GTD A;  4EEI A;  3NZ4 A;  2PFM A;  4NSL A;  5HW2 A;  4V2Q A;  4C6G A;  5F92 A;  1C3C A;  4BAB A;  2O78 A;  1I0A A;  1YIS A;  4MX2 A;  1TJU A;  1EB4 A;  4APA A;  1JSW A;  1TJV A;  2RJR A;  2O7D A;  2PTS A;  3OCF A;  2PTR A;  1T6J A;  1YFM A;  5EYV A;  2X75 A;  1GK3 A;  4CQ5 A;  3RD8 A;  4BAA A;  1C3U A;  1DCN A;  1YFE A;  5D6B A;  1FUQ A;  2O6Y A;  1RE5 A;  3UNV A;  1TJ7 A;  3OCE A;  3CZO A;  4C5U A;  2J91 A;  2QGA B;  1J3U A;  4ADM A;  4V2R A;  4APB A;  5F91 A;  2NYN A;  4EFC A;  3R6Y A;  3KDZ A;  2NYF A;  3TV2 A;  1HY1 A;  1Q5N A;  4ADL A;  3KDY A;  2PTQ A;  4NLE A;  1XWO A;  1HY0 A;  2RJS A;  1T6P A;  1AUW A;  1FUR A;  2QVE A;  3R6V A;  3RRP A;  3E04 A;  1W27 A;  1GKM A;  2OHY A;  1DOF A;  2O7E A;  1VDK A;  1FUP A;  1K7W A;  4C5R A;  1KQ7 A;  3C8T A;  2E9F A;  1GKJ A;  4FFX A;  1GK2 A;  2O7F A;  3QBP A;  1U15 A;  2O7B A;  3GZH A; 
#chains in the Genus database with same CATH topology
 2YII A;  3NO9 A;  1U16 A;  2FUS A;  2VD6 A;  1TJW A;  5EYT A;  3R6Q A;  1Y2M A;  3BHG A;  1K62 A;  1FUO A;  4FLC A;  4HGV A;  4C5S A;  2HVG A;  1B8F A;  3GTD A;  4EEI A;  3NZ4 A;  2PFM A;  4NSL A;  5HW2 A;  4V2Q A;  4C6G A;  5F92 A;  1C3C A;  4BAB A;  2O78 A;  1I0A A;  1YIS A;  4MX2 A;  1XL8 A;  4WNL A;  1TJU A;  3CRW 1;  1EB4 A;  4APA A;  5M0J A;  1TJV A;  2RJR A;  2O7D A;  2PTS A;  3OCF A;  2PTR A;  1T6J A;  1YFM A;  5EYV A;  5M0I A;  2X75 A;  1GK3 A;  4CQ5 A;  3RD8 A;  4BAA A;  1C3U A;  4A15 A;  1DCN A;  1YFE A;  5D6B A;  1FUQ A;  2O6Y A;  1RE5 A;  3UNV A;  2FEL A;  1TJ7 A;  3OCE A;  3CZO A;  4C5U A;  2J91 A;  2QGA B;  1J3U A;  4ADM A;  4V2R A;  4APB A;  2VL7 A;  5F91 A;  3GZH A;  2NYN A;  4EFC A;  3R6Y A;  3KDZ A;  2NYF A;  3TV2 A;  1HY1 A;  1Q5N A;  4ADL A;  3KDY A;  2PTQ A;  4NLE A;  1XWO A;  1HY0 A;  2RJS A;  1T6P A;  1AUW A;  1FUR A;  2QVE A;  3R6V A;  3RRP A;  2VSF A;  3E04 A;  1W27 A;  2FEN A;  1GKM A;  2OHY A;  1DOF A;  1XL7 A;  2O7E A;  5H8W A;  1VDK A;  1FUP A;  1K7W A;  4C5R A;  1KQ7 A;  3C8T A;  2E9F A;  1GKJ A;  3CRV A;  4FFX A;  1GK2 A;  2O7F A;  1XMC A;  3QBP A;  1U15 A;  1XMD A;  1XLY A;  2O7B A;  1JSW A; 
#chains in the Genus database with same CATH homology
 2YII A;  3NO9 A;  1U16 A;  2FUS A;  2VD6 A;  1TJW A;  5EYT A;  3R6Q A;  1Y2M A;  3BHG A;  1K62 A;  1FUO A;  4FLC A;  4HGV A;  4C5S A;  2HVG A;  1B8F A;  3GTD A;  4EEI A;  3NZ4 A;  2PFM A;  4NSL A;  5HW2 A;  4V2Q A;  4C6G A;  5F92 A;  1C3C A;  4BAB A;  2O78 A;  1I0A A;  1YIS A;  4MX2 A;  1TJU A;  1EB4 A;  4APA A;  1JSW A;  1TJV A;  2RJR A;  2O7D A;  2PTS A;  3OCF A;  2PTR A;  1T6J A;  1YFM A;  5EYV A;  2X75 A;  1GK3 A;  4CQ5 A;  3RD8 A;  4BAA A;  1C3U A;  1DCN A;  1YFE A;  5D6B A;  1FUQ A;  2O6Y A;  1RE5 A;  3UNV A;  1TJ7 A;  3OCE A;  3CZO A;  4C5U A;  2J91 A;  2QGA B;  1J3U A;  4ADM A;  4V2R A;  4APB A;  5F91 A;  2NYN A;  4EFC A;  3R6Y A;  3KDZ A;  2NYF A;  3TV2 A;  1HY1 A;  1Q5N A;  4ADL A;  3KDY A;  2PTQ A;  4NLE A;  1XWO A;  1HY0 A;  2RJS A;  1T6P A;  1AUW A;  1FUR A;  2QVE A;  3R6V A;  3RRP A;  3E04 A;  1W27 A;  1GKM A;  2OHY A;  1DOF A;  2O7E A;  1VDK A;  1FUP A;  1K7W A;  4C5R A;  1KQ7 A;  3C8T A;  2E9F A;  1GKJ A;  4FFX A;  1GK2 A;  2O7F A;  3QBP A;  1U15 A;  2O7B A;  3GZH A; 
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