2RKYA

Crystal structure of the fourth and fifth fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-1
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
90
structure length
90
Chain Sequence
AEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
source organism Homo sapiens
publication title Crystal structures of fibronectin-binding sites from Staphylococcus aureus FnBPA in complex with fibronectin domains
pubmed doi rcsb
molecule keywords Fibronectin
total genus 18
structure length 90
sequence length 90
chains with identical sequence C
ec nomenclature
pdb deposition date 2007-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2rkyA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2rkyA02
1MD8A 2IZ3A 2XWBF 1OK9A 1Z92B 2YRAA 1GKGA 4KKDA 1FBRA 3MQLA 2EHFA 1OK3A 2V8EA 5HYUB 2UWNA 2W81A 1TPNA 3ZD2A 4LOSA 1U5MA 4B2RA 5FO8C 2CG6A 2JRAA 4MUCA 1ZJKA 1ELVA 1TPGA 4WJG2 3ZD1A 4CSYA 1Q3XA 3OEDC 2LOJA 3L89M 1HFHA 1QO6A 2RLPA 4JHSA 1CKLA 3R62A 5JPMG 1OJWA 2ERJA 2JGXA 3TVJA 1O9AA 4AYEA 1H03P 1QUBA 1G4GA 4DJZA 2RKYA 1OK2A 3IU3I 4AYDA 1PPQA 1SS2A 3OXUD 2A55A 2RL0A 3O8EB 3ZRZA 1OJVA 1SRZA 1G4FA 2EC3A 1VVDA 2W80A 2G7IA 3RJ3D 1GKNA 4J38B 4LOTA 3INBC 2WIIC 1MD7A 4B2SA 5HYTB 3GOVA 4ONTD 1TPMA 2IZ4A 2CG7A 4AYIA 1E88A 1OK1A 2KMSA 4IGDA 3CALA 5I0QB 3IX0A 5HZPB 2BZMA 2XRBA 3OP8A 2XRDA 2XQWC 1H2PP 3T5OA 3EJHA 4AYMA 1GHQB 2MCYA 1HFIA 3KZJA 2MCZA 3ERBA 1QGBA 4YNXA 1H2QP 3KXVA 3M7PA 1E5GA 2QY0A 2KRIA 4F4OC 2XWJI 2CKUA 4K12A 2RKZA 1VVCA 1H04P 1OJYA 2YBYA 4ZH1D 1GPZA 1UOTP 4C16A 3NFPI 4PZ5A 2O39C 4FXGG 1NWVA 2B5ID 1HCCA 1E8BA 3GXEA 1C1ZA 1LY2A 2JGWA 4A5WB 5HYPA 3SW0X 2RLQA
chains in the Genus database with same CATH superfamily
2Y8RA 1MD8A 2IZ3A 2XWBF 1OK9A 1Z92B 2YRAA 1GKGA 4KKDA 2ZYCA 1FBRA 4APLA 3MQLA 4BWCA 5DN5A 2EHFA 1OK3A 2Y8TA 2V8EA 5HYUB 2UWNA 2W81A 1TPNA 3ZD2A 4LOSA 1U5MA 4B2RA 5FO8C 2CG6A 2JRAA 4MUCA 1ZJKA 1ELVA 1TPGA 4WJG2 3ZD1A 3NJAA 4CSYA 1Q3XA 3WSYA 3OEDC 2LOJA 4N7EA 3FGTA 3L89M 1HFHA 1QO6A 3ZLEA 2RLPA 4JHSA 1CKLA 3R62A 5JPMG 1OJWA 2ERJA 2JGXA 3TVJA 1O9AA 2Y8SA 4AYEA 1H03P 1QUBA 1G4GA 4DJZA 2RKYA 1OK2A 3IU3I 4AYDA 1PPQA 1SS2A 3OXUD 2A55A 2RL0A 4MSLA 3O8EB 3ZRZA 1OJVA 1SRZA 1G4FA 2EC3A 1VVDA 2W80A 2G7IA 3RJ3D 1GKNA 4J38B 4LOTA 3INBC 2WIIC 1MD7A 4B2SA 3ZLDA 4YIZA 5HYTB 3GOVA 4ONTD 1TPMA 3CI0J 2IZ4A 2CG7A 4AYIA 1E88A 1OK1A 2X2ZA 2KMSA 3FGRA 4IGDA 3CALA 5I0QB 3IX0A 5HZPB 2BZMA 2XRBA 3OP8A 2XRDA 2XQWC 1RLHA 1H2PP 5DN4A 3T5OA 3EJHA 4AYMA 1GHQB 2MCYA 1HFIA 3KZJA 2MCZA 3ERBA 3WSXA 1QGBA 4YNXA 1H2QP 3KXVA 3M7PA 3K3TA 1E5GA 2QY0A 2KRIA 4F4OC 2XWJI 2CKUA 4K12A 2RKZA 1VVCA 4PO7A 1H04P 1OJYA 2YBYA 4ZH1D 3VWOA 1GPZA 1UOTP 4C16A 3NFPI 4PZ5A 2I2LA 2O39C 4FXGG 1NWVA 2B5ID 1HCCA 1E8BA 3GXEA 1C1ZA 1LY2A 2JGWA 4A5WB 5HYPA 3F6KA 3SW0X 2RLQA
chains in the Genus database with same CATH topology
1MD8A 2IZ3A 2XWBF 1OK9A 1Z92B 2YRAA 1GKGA 4KKDA 1FBRA 3MQLA 2EHFA 1OK3A 2V8EA 5HYUB 2UWNA 2W81A 1TPNA 3ZD2A 4LOSA 1U5MA 4B2RA 5FO8C 2CG6A 2JRAA 4MUCA 1ZJKA 1ELVA 1TPGA 4WJG2 3ZD1A 4CSYA 1Q3XA 3OEDC 2LOJA 3L89M 1HFHA 1QO6A 2RLPA 4JHSA 1CKLA 3R62A 5JPMG 1OJWA 2ERJA 2JGXA 3TVJA 1O9AA 4AYEA 1H03P 1QUBA 1G4GA 4DJZA 2RKYA 1OK2A 3IU3I 4AYDA 1PPQA 1SS2A 3OXUD 2A55A 2RL0A 3O8EB 3ZRZA 1OJVA 1SRZA 1G4FA 2EC3A 1VVDA 2W80A 2G7IA 3RJ3D 1GKNA 4J38B 4LOTA 3INBC 2WIIC 1MD7A 4B2SA 5HYTB 3GOVA 4ONTD 1TPMA 2IZ4A 2CG7A 4AYIA 1E88A 1OK1A 2KMSA 4IGDA 3CALA 5I0QB 3IX0A 5HZPB 2BZMA 2XRBA 3OP8A 2XRDA 2XQWC 1H2PP 3T5OA 3EJHA 4AYMA 1GHQB 2MCYA 1HFIA 3KZJA 2MCZA 3ERBA 1QGBA 4YNXA 1H2QP 3KXVA 3M7PA 1E5GA 2QY0A 2KRIA 4F4OC 2XWJI 2CKUA 4K12A 2RKZA 1VVCA 1H04P 1OJYA 2YBYA 4ZH1D 1GPZA 1UOTP 4C16A 3NFPI 4PZ5A 2O39C 4FXGG 1NWVA 2B5ID 1HCCA 1E8BA 3GXEA 1C1ZA 1LY2A 2JGWA 4A5WB 5HYPA 3SW0X 2RLQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MD8 A;  2IZ3 A;  2XWB F;  1OK9 A;  1Z92 B;  2YRA A;  1GKG A;  4KKD A;  1FBR A;  3MQL A;  2EHF A;  1OK3 A;  2V8E A;  5HYU B;  2UWN A;  2W81 A;  1TPN A;  3ZD2 A;  4LOS A;  1U5M A;  4B2R A;  5FO8 C;  2CG6 A;  2JRA A;  4MUC A;  1ZJK A;  1ELV A;  1TPG A;  4WJG 2;  3ZD1 A;  4CSY A;  1Q3X A;  3OED C;  2LOJ A;  3L89 M;  1HFH A;  1QO6 A;  2RLP A;  4JHS A;  1CKL A;  3R62 A;  5JPM G;  1OJW A;  2ERJ A;  2JGX A;  3TVJ A;  1O9A A;  4AYE A;  1H03 P;  1QUB A;  1G4G A;  4DJZ A;  2RKY A;  1OK2 A;  3IU3 I;  4AYD A;  1PPQ A;  1SS2 A;  3OXU D;  2A55 A;  2RL0 A;  3O8E B;  3ZRZ A;  1OJV A;  1SRZ A;  1G4F A;  2EC3 A;  1VVD A;  2W80 A;  2G7I A;  3RJ3 D;  1GKN A;  4J38 B;  4LOT A;  3INB C;  2WII C;  1MD7 A;  4B2S A;  5HYT B;  3GOV A;  4ONT D;  1TPM A;  2IZ4 A;  2CG7 A;  4AYI A;  1E88 A;  1OK1 A;  2KMS A;  4IGD A;  3CAL A;  5I0Q B;  3IX0 A;  5HZP B;  2BZM A;  2XRB A;  3OP8 A;  2XRD A;  2XQW C;  1H2P P;  3T5O A;  3EJH A;  4AYM A;  1GHQ B;  2MCY A;  1HFI A;  3KZJ A;  2MCZ A;  3ERB A;  1QGB A;  4YNX A;  1H2Q P;  3KXV A;  3M7P A;  1E5G A;  2QY0 A;  2KRI A;  4F4O C;  2XWJ I;  2CKU A;  4K12 A;  2RKZ A;  1VVC A;  1H04 P;  1OJY A;  2YBY A;  4ZH1 D;  1GPZ A;  1UOT P;  4C16 A;  3NFP I;  4PZ5 A;  2O39 C;  4FXG G;  1NWV A;  2B5I D;  1HCC A;  1E8B A;  3GXE A;  1C1Z A;  1LY2 A;  2JGW A;  4A5W B;  5HYP A;  3SW0 X;  2RLQ A; 
#chains in the Genus database with same CATH topology
 2Y8R A;  1MD8 A;  2IZ3 A;  2XWB F;  1OK9 A;  1Z92 B;  2YRA A;  1GKG A;  4KKD A;  2ZYC A;  1FBR A;  4APL A;  3MQL A;  4BWC A;  5DN5 A;  2EHF A;  1OK3 A;  2Y8T A;  2V8E A;  5HYU B;  2UWN A;  2W81 A;  1TPN A;  3ZD2 A;  4LOS A;  1U5M A;  4B2R A;  5FO8 C;  2CG6 A;  2JRA A;  4MUC A;  1ZJK A;  1ELV A;  1TPG A;  4WJG 2;  3ZD1 A;  3NJA A;  4CSY A;  1Q3X A;  3WSY A;  3OED C;  2LOJ A;  4N7E A;  3FGT A;  3L89 M;  1HFH A;  1QO6 A;  3ZLE A;  2RLP A;  4JHS A;  1CKL A;  3R62 A;  5JPM G;  1OJW A;  2ERJ A;  2JGX A;  3TVJ A;  1O9A A;  2Y8S A;  4AYE A;  1H03 P;  1QUB A;  1G4G A;  4DJZ A;  2RKY A;  1OK2 A;  3IU3 I;  4AYD A;  1PPQ A;  1SS2 A;  3OXU D;  2A55 A;  2RL0 A;  4MSL A;  3O8E B;  3ZRZ A;  1OJV A;  1SRZ A;  1G4F A;  2EC3 A;  1VVD A;  2W80 A;  2G7I A;  3RJ3 D;  1GKN A;  4J38 B;  4LOT A;  3INB C;  2WII C;  1MD7 A;  4B2S A;  3ZLD A;  4YIZ A;  5HYT B;  3GOV A;  4ONT D;  1TPM A;  3CI0 J;  2IZ4 A;  2CG7 A;  4AYI A;  1E88 A;  1OK1 A;  2X2Z A;  2KMS A;  3FGR A;  4IGD A;  3CAL A;  5I0Q B;  3IX0 A;  5HZP B;  2BZM A;  2XRB A;  3OP8 A;  2XRD A;  2XQW C;  1RLH A;  1H2P P;  5DN4 A;  3T5O A;  3EJH A;  4AYM A;  1GHQ B;  2MCY A;  1HFI A;  3KZJ A;  2MCZ A;  3ERB A;  3WSX A;  1QGB A;  4YNX A;  1H2Q P;  3KXV A;  3M7P A;  3K3T A;  1E5G A;  2QY0 A;  2KRI A;  4F4O C;  2XWJ I;  2CKU A;  4K12 A;  2RKZ A;  1VVC A;  4PO7 A;  1H04 P;  1OJY A;  2YBY A;  4ZH1 D;  3VWO A;  1GPZ A;  1UOT P;  4C16 A;  3NFP I;  4PZ5 A;  2I2L A;  2O39 C;  4FXG G;  1NWV A;  2B5I D;  1HCC A;  1E8B A;  3GXE A;  1C1Z A;  1LY2 A;  2JGW A;  4A5W B;  5HYP A;  3F6K A;  3SW0 X;  2RLQ A; 
#chains in the Genus database with same CATH homology
 1MD8 A;  2IZ3 A;  2XWB F;  1OK9 A;  1Z92 B;  2YRA A;  1GKG A;  4KKD A;  1FBR A;  3MQL A;  2EHF A;  1OK3 A;  2V8E A;  5HYU B;  2UWN A;  2W81 A;  1TPN A;  3ZD2 A;  4LOS A;  1U5M A;  4B2R A;  5FO8 C;  2CG6 A;  2JRA A;  4MUC A;  1ZJK A;  1ELV A;  1TPG A;  4WJG 2;  3ZD1 A;  4CSY A;  1Q3X A;  3OED C;  2LOJ A;  3L89 M;  1HFH A;  1QO6 A;  2RLP A;  4JHS A;  1CKL A;  3R62 A;  5JPM G;  1OJW A;  2ERJ A;  2JGX A;  3TVJ A;  1O9A A;  4AYE A;  1H03 P;  1QUB A;  1G4G A;  4DJZ A;  2RKY A;  1OK2 A;  3IU3 I;  4AYD A;  1PPQ A;  1SS2 A;  3OXU D;  2A55 A;  2RL0 A;  3O8E B;  3ZRZ A;  1OJV A;  1SRZ A;  1G4F A;  2EC3 A;  1VVD A;  2W80 A;  2G7I A;  3RJ3 D;  1GKN A;  4J38 B;  4LOT A;  3INB C;  2WII C;  1MD7 A;  4B2S A;  5HYT B;  3GOV A;  4ONT D;  1TPM A;  2IZ4 A;  2CG7 A;  4AYI A;  1E88 A;  1OK1 A;  2KMS A;  4IGD A;  3CAL A;  5I0Q B;  3IX0 A;  5HZP B;  2BZM A;  2XRB A;  3OP8 A;  2XRD A;  2XQW C;  1H2P P;  3T5O A;  3EJH A;  4AYM A;  1GHQ B;  2MCY A;  1HFI A;  3KZJ A;  2MCZ A;  3ERB A;  1QGB A;  4YNX A;  1H2Q P;  3KXV A;  3M7P A;  1E5G A;  2QY0 A;  2KRI A;  4F4O C;  2XWJ I;  2CKU A;  4K12 A;  2RKZ A;  1VVC A;  1H04 P;  1OJY A;  2YBY A;  4ZH1 D;  1GPZ A;  1UOT P;  4C16 A;  3NFP I;  4PZ5 A;  2O39 C;  4FXG G;  1NWV A;  2B5I D;  1HCC A;  1E8B A;  3GXE A;  1C1Z A;  1LY2 A;  2JGW A;  4A5W B;  5HYP A;  3SW0 X;  2RLQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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