2RMJA

Solution structure of rig-i c-terminal domain
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
134
structure length
134
Chain Sequence
DSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEMSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Probable ATP-dependent RNA helicase DDX58
publication title Nonself RNA-Sensing Mechanism of RIG-I Helicase and Activation of Antiviral Immune Responses
pubmed doi rcsb
source organism Homo sapiens
total genus 9
structure length 134
sequence length 134
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2007-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11648 RIG-I_C-RD C-terminal domain of RIG-I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.30 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 2rmjA00
3NCUA 3ZD7A 3EQTA 3GA3A 5F9HA 2QFDA 4A2XA 2RMJA 3ZD6A 2W4RA 5E3HA 4BPBA 5F98A 3OG8A 2QFBA 4AY2A 2RQBA 3LRNA 2RQAA 4A2VA 2YKGA 3LRRA 5F9FA
chains in the Genus database with same CATH superfamily
3NCUA 4V30A 3ZD7A 3EQTA 5AMHA 3GA3A 4V2ZA 1YZ1A 3FACA 5F9HA 1H6QA 2QFDA 4V2YA 4TZCA 4A2XA 2KZNA 2RMJA 2FU5A 3ZD6A 3WX1A 3MAOA 4CI1B 2KWBA 2W4RA 4CI2B 5E3HA 3P3KA 4TZUA 1HXRA 2LVLA 3E0MA 2HR9A 1FWQA 4BPBA 1H7YA 2K8DA 5F98A 3OG8A 2QFBA 4AY2A 1L1DA 2KV1A 3HCHA 3HCGA 3HCJA 2RQBA 3E0OA 3WX2A 3HCIA 3LRNA 2LOYA 4CI3B 4TZ4C 3CEZA 4V31A 1TXJA 2RQAA 3EBMA 4A2VA 2YKGA 3LRRA 3DJMA 5F9FA 3CXKA
chains in the Genus database with same CATH topology
3NCUA 3ZD7A 3EQTA 3GA3A 3FACA 1YZ1A 5F9HA 1H6QA 2QFDA 4A2XA 2RMJA 2FU5A 3ZD6A 2KWBA 2W4RA 5E3HA 3P3KA 1HXRA 2LVLA 2HR9A 1FWQA 4BPBA 1H7YA 5F98A 3OG8A 2QFBA 4AY2A 2RQBA 3LRNA 2LOYA 1TXJA 2RQAA 3EBMA 4A2VA 2YKGA 3LRRA 3DJMA 5F9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NCU A;  3ZD7 A;  3EQT A;  3GA3 A;  5F9H A;  2QFD A;  4A2X A;  2RMJ A;  3ZD6 A;  2W4R A;  5E3H A;  4BPB A;  5F98 A;  3OG8 A;  2QFB A;  4AY2 A;  2RQB A;  3LRN A;  2RQA A;  4A2V A;  2YKG A;  3LRR A;  5F9F A; 
#chains in the Genus database with same CATH topology
 3NCU A;  4V30 A;  3ZD7 A;  3EQT A;  5AMH A;  3GA3 A;  4V2Z A;  1YZ1 A;  3FAC A;  5F9H A;  1H6Q A;  2QFD A;  4V2Y A;  4TZC A;  4A2X A;  2KZN A;  2RMJ A;  2FU5 A;  3ZD6 A;  3WX1 A;  3MAO A;  4CI1 B;  2KWB A;  2W4R A;  4CI2 B;  5E3H A;  3P3K A;  4TZU A;  1HXR A;  2LVL A;  3E0M A;  2HR9 A;  1FWQ A;  4BPB A;  1H7Y A;  2K8D A;  5F98 A;  3OG8 A;  2QFB A;  4AY2 A;  1L1D A;  2KV1 A;  3HCH A;  3HCG A;  3HCJ A;  2RQB A;  3E0O A;  3WX2 A;  3HCI A;  3LRN A;  2LOY A;  4CI3 B;  4TZ4 C;  3CEZ A;  4V31 A;  1TXJ A;  2RQA A;  3EBM A;  4A2V A;  2YKG A;  3LRR A;  3DJM A;  5F9F A;  3CXK A; 
#chains in the Genus database with same CATH homology
 3NCU A;  3ZD7 A;  3EQT A;  3GA3 A;  3FAC A;  1YZ1 A;  5F9H A;  1H6Q A;  2QFD A;  4A2X A;  2RMJ A;  2FU5 A;  3ZD6 A;  2KWB A;  2W4R A;  5E3H A;  3P3K A;  1HXR A;  2LVL A;  2HR9 A;  1FWQ A;  4BPB A;  1H7Y A;  5F98 A;  3OG8 A;  2QFB A;  4AY2 A;  2RQB A;  3LRN A;  2LOY A;  1TXJ A;  2RQA A;  3EBM A;  4A2V A;  2YKG A;  3LRR A;  3DJM A;  5F9F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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