2RNNA

Solution structure of the n-terminal sap domain of sumo e3 ligases from saccharomyces cerevisiae
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
114
structure length
114
Chain Sequence
GSHMINLEDYWEDETPGPDREPTNELRNEVEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNALRKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords E3 SUMO-protein ligase SIZ1
publication title Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 26
structure length 114
sequence length 114
ec nomenclature ec 6.-.-.-:
pdb deposition date 2008-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02037 SAP SAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.30 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 SAP domain 2rnnA00
4UZWA 1JEQA 2RNOA 2KVUA 2WQGA 2KVDA 2KW9A 1ZBHA 2RNNA 4BITA 2KVEA 1V66A 1H1JS 1JJRA 2JVWA
chains in the Genus database with same CATH superfamily
4UZWA 2HJQA 3FLGA 1H9FA 2KVDA 1EN7A 1E7DA 2KFVA 2KW9A 1A8VA 1YNSA 2MPHA 2W51A 1V66A 1ZS9A 1JJRA 2JVWA 1GL9B 2RNOA 1GJJA 1E7LA 1GKUB 2DK4A 2A8VA 1A63A 2QNCA 2KVEA 2LC3A 1KHCA 2LD7A 2QNFA 2ODGC 2WQGA 1H9EA 3LLRA 3L0OA 2RNNA 3QKJA 2ODCI 4BITA 1H1JS 1JEQA 2KVUA 1A62A 1Y02A 1ZBHA 2G80A 1JEIA 5CIUA
chains in the Genus database with same CATH topology
4UZWA 1JEQA 2RNOA 2KVUA 2WQGA 2KVDA 2KW9A 1ZBHA 2RNNA 4BITA 2KVEA 1V66A 1H1JS 1JJRA 2JVWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UZW A;  1JEQ A;  2RNO A;  2KVU A;  2WQG A;  2KVD A;  2KW9 A;  1ZBH A;  2RNN A;  4BIT A;  2KVE A;  1V66 A;  1H1J S;  1JJR A;  2JVW A; 
#chains in the Genus database with same CATH topology
 4UZW A;  2HJQ A;  3FLG A;  1H9F A;  2KVD A;  1EN7 A;  1E7D A;  2KFV A;  2KW9 A;  1A8V A;  1YNS A;  2MPH A;  2W51 A;  1V66 A;  1ZS9 A;  1JJR A;  2JVW A;  1GL9 B;  2RNO A;  1GJJ A;  1E7L A;  1GKU B;  2DK4 A;  2A8V A;  1A63 A;  2QNC A;  2KVE A;  2LC3 A;  1KHC A;  2LD7 A;  2QNF A;  2ODG C;  2WQG A;  1H9E A;  3LLR A;  3L0O A;  2RNN A;  3QKJ A;  2ODC I;  4BIT A;  1H1J S;  1JEQ A;  2KVU A;  1A62 A;  1Y02 A;  1ZBH A;  2G80 A;  1JEI A;  5CIU A; 
#chains in the Genus database with same CATH homology
 4UZW A;  1JEQ A;  2RNO A;  2KVU A;  2WQG A;  2KVD A;  2KW9 A;  1ZBH A;  2RNN A;  4BIT A;  2KVE A;  1V66 A;  1H1J S;  1JJR A;  2JVW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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