2ROHA

The dna binding domain of rtbp1
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
122
structure length
122
Chain Sequence
GSPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSSGRIVTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Telomere binding protein-1
publication title Solution structure of the DNA binding domain of rice telomere binding protein RTBP1
pubmed doi rcsb
source organism Oryza sativa
total genus 20
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2008-03-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.220 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2rohA01
2AJEA 2CKXA 2ROHA 2QHBA 2JUHA
chains in the Genus database with same CATH superfamily
4J2VA 5IIUA 2AGHB 2VDBA 2LXSA 4G04A 4FJCB 4G03A 2BXEA 1VZSA 3MHHB 2EFCA 4M70B 3NVKA 2BXLA 4OTTA 1E78A 4TQ1A 4K71A 4GG2A 2BXFA 3TDLA 1J78A 3JRYA 4F5SA 2BXBA 4F5VA 2BXPA 1J7EA 5GINA 3WHQA 2EFHA 2VUFA 1HK2A 4IW1A 1UORA 3FWBC 4F5UA 2LQHA 4S1YA 4FIPB 5BPKA 3GQXA 3V03A 3M99C 3GQUA 1SB0A 4JK4A 3NMUA 2XSIA 2OZBB 3V09A 1KW2A 4N0UD 1FOUA 3LU8A 5ID9A 1E7FA 2E0YA 2KBZA 4DHXB 3GA9L 4HGKA 1E7HA 1GNJA 4LUHA 3WHSA 2DYOA 4C31B 4OR0A 1HA2A 3LU6A 2XMOA 5IJ5A 2QHBA 3BPJA 1LNSA 1HK1A 2DYMA 2LXTA 3ICXA 2AJEA 2EFEA 4D7XA 5IJEA 4K2CA 4Z69A 2KWFA 1TF0A 4LB2A 2BXNA 4BKEA 1GNIA 3NVMA 4W4UB 5B5TA 1E7GA 1NT2B 2Z8JA 2BX8A 2CKXA 3B9MA 4LB9A 2BXKA 4ZUXV 4F5TA 1E7IA 2BXGA 1LOTA 5IJFA 2I30A 1BKEA 2XVQA 4LA0A 5HOZA 4OT2A 4ZCGA 2XW0A 4TQ0A 2VUEA 4LUFA 4N0FD 2DG5A 5GHKA 1E7AA 4L8UA 2ROHA 2BXCA 2JUHA 3UIVA 4ZBKA 4GDXA 4FK5B 1E7CA 2LQIA 1HK3A 1E7EA 3W1SA 1AO6A 1HK4A 1HK5A 2DBXA 2LOQA 4GDKB 3V08A 4L9QA 3G9KD 2BXMA 4EMXA 5D7GA 1MUSA 2Z8IA 4IW2A 1N5UA 1TXUA 3H3AA 2BXAA 1VFIA 1O9XA 4PO0A 2GUTA 3SIUB 3H37A 4ZC6A 5IIHA 2K0NA 2QMCA 3ECPA 1IJGA 4NAWB 4GDLB 3NVIA 1H9ZA 5GIOA 3CX9A 5IFOA 2BXHA 2V36A 2NNWA 2BXIA 2DBWA 4G01A 3MHSB 1MUHA 3SQJA 1MIVA 5DQFA 3PLAA 3SIVB 1E7BA 3KIKA 2DBUA 4ZBRA 4BY9C 2BXQA 2OT3A 2BXDA 4ZBQA 3KJLA 3VQIA 2EFDA 2XVVA 2NQOA 2E0XA 3WHRA 4I9OA 4OTUA 1MIYA 1MIWA 2XVWA 5DBYA 4DM0A 4L9KA 5ID7A 2YDFA 3FWCC 1KXPD 1MA9A 4HGMB 3B9LA 1BJ5A 1JNBA 1BM0A 4E99A 1KDXA 3A73A 2XVUA 4Z9OA 4WA6B 5FUOA 2Z8KA 4MBEC 3A75A 3LU7A 5IIXA 1MM8A 4N3ZA 1H5WA 5GIPA 2I2ZA 2BXOA 3JQZA 2QM6A 3FNMA 2XW1A
chains in the Genus database with same CATH topology
4J2VA 5IIUA 2VDBA 4G04A 4FJCB 4G03A 2BXEA 1VZSA 3MHHB 2EFCA 4M70B 3NVKA 2BXLA 4OTTA 1E78A 4TQ1A 4K71A 4GG2A 2BXFA 3TDLA 1J78A 3JRYA 4F5SA 2BXBA 4F5VA 2BXPA 1J7EA 5GINA 3WHQA 2EFHA 2VUFA 1HK2A 4IW1A 1UORA 3FWBC 4F5UA 4S1YA 4FIPB 5BPKA 3GQXA 3V03A 3M99C 3GQUA 4JK4A 3NMUA 2XSIA 2OZBB 3V09A 1KW2A 4N0UD 1FOUA 3LU8A 5ID9A 1E7FA 2E0YA 2KBZA 4DHXB 3GA9L 4HGKA 1E7HA 1GNJA 4LUHA 3WHSA 2DYOA 4C31B 4OR0A 1HA2A 3LU6A 2XMOA 5IJ5A 2QHBA 1LNSA 1HK1A 2DYMA 3ICXA 2AJEA 2EFEA 5IJEA 4K2CA 4Z69A 1TF0A 4LB2A 2BXNA 4BKEA 1GNIA 3NVMA 4W4UB 5B5TA 1E7GA 1NT2B 2Z8JA 2BX8A 2CKXA 3B9MA 4LB9A 2BXKA 4ZUXV 4F5TA 1E7IA 2BXGA 1LOTA 5IJFA 2I30A 1BKEA 2XVQA 4LA0A 5HOZA 4OT2A 4ZCGA 2XW0A 4TQ0A 2VUEA 4LUFA 4N0FD 2DG5A 5GHKA 1E7AA 4L8UA 2ROHA 2BXCA 2JUHA 3UIVA 4ZBKA 4GDXA 4FK5B 1E7CA 1HK3A 1E7EA 3W1SA 1AO6A 1HK4A 1HK5A 2DBXA 2LOQA 4GDKB 3V08A 4L9QA 3G9KD 2BXMA 4EMXA 5D7GA 2Z8IA 4IW2A 1N5UA 1TXUA 3H3AA 2BXAA 1VFIA 1O9XA 4PO0A 3SIUB 3H37A 4ZC6A 5IIHA 2QMCA 1IJGA 4NAWB 4GDLB 3NVIA 1H9ZA 5GIOA 3CX9A 5IFOA 2BXHA 2V36A 2NNWA 2BXIA 2DBWA 4G01A 3MHSB 3SQJA 1MIVA 5DQFA 3PLAA 3SIVB 1E7BA 3KIKA 2DBUA 4ZBRA 4BY9C 2BXQA 2OT3A 2BXDA 4ZBQA 3KJLA 3VQIA 2EFDA 2XVVA 2NQOA 2E0XA 3WHRA 4OTUA 1MIYA 1MIWA 2XVWA 5DBYA 4L9KA 5ID7A 2YDFA 3FWCC 1KXPD 1MA9A 4HGMB 3B9LA 1BJ5A 1JNBA 1BM0A 4E99A 3A73A 2XVUA 4Z9OA 4WA6B 5FUOA 2Z8KA 4MBEC 3A75A 3LU7A 5IIXA 4N3ZA 1H5WA 5GIPA 2I2ZA 2BXOA 3JQZA 2QM6A 3FNMA 2XW1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AJE A;  2CKX A;  2ROH A;  2QHB A;  2JUH A; 
#chains in the Genus database with same CATH topology
 4J2V A;  5IIU A;  2AGH B;  2VDB A;  2LXS A;  4G04 A;  4FJC B;  4G03 A;  2BXE A;  1VZS A;  3MHH B;  2EFC A;  4M70 B;  3NVK A;  2BXL A;  4OTT A;  1E78 A;  4TQ1 A;  4K71 A;  4GG2 A;  2BXF A;  3TDL A;  1J78 A;  3JRY A;  4F5S A;  2BXB A;  4F5V A;  2BXP A;  1J7E A;  5GIN A;  3WHQ A;  2EFH A;  2VUF A;  1HK2 A;  4IW1 A;  1UOR A;  3FWB C;  4F5U A;  2LQH A;  4S1Y A;  4FIP B;  5BPK A;  3GQX A;  3V03 A;  3M99 C;  3GQU A;  1SB0 A;  4JK4 A;  3NMU A;  2XSI A;  2OZB B;  3V09 A;  1KW2 A;  4N0U D;  1FOU A;  3LU8 A;  5ID9 A;  1E7F A;  2E0Y A;  2KBZ A;  4DHX B;  3GA9 L;  4HGK A;  1E7H A;  1GNJ A;  4LUH A;  3WHS A;  2DYO A;  4C31 B;  4OR0 A;  1HA2 A;  3LU6 A;  2XMO A;  5IJ5 A;  2QHB A;  3BPJ A;  1LNS A;  1HK1 A;  2DYM A;  2LXT A;  3ICX A;  2AJE A;  2EFE A;  4D7X A;  5IJE A;  4K2C A;  4Z69 A;  2KWF A;  1TF0 A;  4LB2 A;  2BXN A;  4BKE A;  1GNI A;  3NVM A;  4W4U B;  5B5T A;  1E7G A;  1NT2 B;  2Z8J A;  2BX8 A;  2CKX A;  3B9M A;  4LB9 A;  2BXK A;  4ZUX V;  4F5T A;  1E7I A;  2BXG A;  1LOT A;  5IJF A;  2I30 A;  1BKE A;  2XVQ A;  4LA0 A;  5HOZ A;  4OT2 A;  4ZCG A;  2XW0 A;  4TQ0 A;  2VUE A;  4LUF A;  4N0F D;  2DG5 A;  5GHK A;  1E7A A;  4L8U A;  2ROH A;  2BXC A;  2JUH A;  3UIV A;  4ZBK A;  4GDX A;  4FK5 B;  1E7C A;  2LQI A;  1HK3 A;  1E7E A;  3W1S A;  1AO6 A;  1HK4 A;  1HK5 A;  2DBX A;  2LOQ A;  4GDK B;  3V08 A;  4L9Q A;  3G9K D;  2BXM A;  4EMX A;  5D7G A;  1MUS A;  2Z8I A;  4IW2 A;  1N5U A;  1TXU A;  3H3A A;  2BXA A;  1VFI A;  1O9X A;  4PO0 A;  2GUT A;  3SIU B;  3H37 A;  4ZC6 A;  5IIH A;  2K0N A;  2QMC A;  3ECP A;  1IJG A;  4NAW B;  4GDL B;  3NVI A;  1H9Z A;  5GIO A;  3CX9 A;  5IFO A;  2BXH A;  2V36 A;  2NNW A;  2BXI A;  2DBW A;  4G01 A;  3MHS B;  1MUH A;  3SQJ A;  1MIV A;  5DQF A;  3PLA A;  3SIV B;  1E7B A;  3KIK A;  2DBU A;  4ZBR A;  4BY9 C;  2BXQ A;  2OT3 A;  2BXD A;  4ZBQ A;  3KJL A;  3VQI A;  2EFD A;  2XVV A;  2NQO A;  2E0X A;  3WHR A;  4I9O A;  4OTU A;  1MIY A;  1MIW A;  2XVW A;  5DBY A;  4DM0 A;  4L9K A;  5ID7 A;  2YDF A;  3FWC C;  1KXP D;  1MA9 A;  4HGM B;  3B9L A;  1BJ5 A;  1JNB A;  1BM0 A;  4E99 A;  1KDX A;  3A73 A;  2XVU A;  4Z9O A;  4WA6 B;  5FUO A;  2Z8K A;  4MBE C;  3A75 A;  3LU7 A;  5IIX A;  1MM8 A;  4N3Z A;  1H5W A;  5GIP A;  2I2Z A;  2BXO A;  3JQZ A;  2QM6 A;  3FNM A;  2XW1 A; 
#chains in the Genus database with same CATH homology
 4J2V A;  5IIU A;  2VDB A;  4G04 A;  4FJC B;  4G03 A;  2BXE A;  1VZS A;  3MHH B;  2EFC A;  4M70 B;  3NVK A;  2BXL A;  4OTT A;  1E78 A;  4TQ1 A;  4K71 A;  4GG2 A;  2BXF A;  3TDL A;  1J78 A;  3JRY A;  4F5S A;  2BXB A;  4F5V A;  2BXP A;  1J7E A;  5GIN A;  3WHQ A;  2EFH A;  2VUF A;  1HK2 A;  4IW1 A;  1UOR A;  3FWB C;  4F5U A;  4S1Y A;  4FIP B;  5BPK A;  3GQX A;  3V03 A;  3M99 C;  3GQU A;  4JK4 A;  3NMU A;  2XSI A;  2OZB B;  3V09 A;  1KW2 A;  4N0U D;  1FOU A;  3LU8 A;  5ID9 A;  1E7F A;  2E0Y A;  2KBZ A;  4DHX B;  3GA9 L;  4HGK A;  1E7H A;  1GNJ A;  4LUH A;  3WHS A;  2DYO A;  4C31 B;  4OR0 A;  1HA2 A;  3LU6 A;  2XMO A;  5IJ5 A;  2QHB A;  1LNS A;  1HK1 A;  2DYM A;  3ICX A;  2AJE A;  2EFE A;  5IJE A;  4K2C A;  4Z69 A;  1TF0 A;  4LB2 A;  2BXN A;  4BKE A;  1GNI A;  3NVM A;  4W4U B;  5B5T A;  1E7G A;  1NT2 B;  2Z8J A;  2BX8 A;  2CKX A;  3B9M A;  4LB9 A;  2BXK A;  4ZUX V;  4F5T A;  1E7I A;  2BXG A;  1LOT A;  5IJF A;  2I30 A;  1BKE A;  2XVQ A;  4LA0 A;  5HOZ A;  4OT2 A;  4ZCG A;  2XW0 A;  4TQ0 A;  2VUE A;  4LUF A;  4N0F D;  2DG5 A;  5GHK A;  1E7A A;  4L8U A;  2ROH A;  2BXC A;  2JUH A;  3UIV A;  4ZBK A;  4GDX A;  4FK5 B;  1E7C A;  1HK3 A;  1E7E A;  3W1S A;  1AO6 A;  1HK4 A;  1HK5 A;  2DBX A;  2LOQ A;  4GDK B;  3V08 A;  4L9Q A;  3G9K D;  2BXM A;  4EMX A;  5D7G A;  2Z8I A;  4IW2 A;  1N5U A;  1TXU A;  3H3A A;  2BXA A;  1VFI A;  1O9X A;  4PO0 A;  3SIU B;  3H37 A;  4ZC6 A;  5IIH A;  2QMC A;  1IJG A;  4NAW B;  4GDL B;  3NVI A;  1H9Z A;  5GIO A;  3CX9 A;  5IFO A;  2BXH A;  2V36 A;  2NNW A;  2BXI A;  2DBW A;  4G01 A;  3MHS B;  3SQJ A;  1MIV A;  5DQF A;  3PLA A;  3SIV B;  1E7B A;  3KIK A;  2DBU A;  4ZBR A;  4BY9 C;  2BXQ A;  2OT3 A;  2BXD A;  4ZBQ A;  3KJL A;  3VQI A;  2EFD A;  2XVV A;  2NQO A;  2E0X A;  3WHR A;  4OTU A;  1MIY A;  1MIW A;  2XVW A;  5DBY A;  4L9K A;  5ID7 A;  2YDF A;  3FWC C;  1KXP D;  1MA9 A;  4HGM B;  3B9L A;  1BJ5 A;  1JNB A;  1BM0 A;  4E99 A;  3A73 A;  2XVU A;  4Z9O A;  4WA6 B;  5FUO A;  2Z8K A;  4MBE C;  3A75 A;  3LU7 A;  5IIX A;  4N3Z A;  1H5W A;  5GIP A;  2I2Z A;  2BXO A;  3JQZ A;  2QM6 A;  3FNM A;  2XW1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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