2ROHA

The dna binding domain of rtbp1
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
122
structure length
122
Chain Sequence
GSPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSSGRIVTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Telomere binding protein-1
publication title Solution structure of the DNA binding domain of rice telomere binding protein RTBP1
pubmed doi rcsb
source organism Oryza sativa
total genus 20
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2008-03-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.220 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2rohA01
2QHBA 2AJEA 2CKXA 2ROHA 2JUHA
chains in the Genus database with same CATH superfamily
4W4UB 3G9KD 4FK5B 4E99A 4HGKA 5IFOA 1E7GA 2DBWA 2OT3A 1H5WA 2BXNA 4F5VA 5IJ5A 4G03A 1BKEA 2DBUA 3B9LA 1E7IA 5IIHA 3JQZA 5DBYA 5IIXA 2BXFA 2AGHB 3FNMA 2EFHA 4HGMB 2LOQA 4MBEC 2BXLA 3B9MA 1E7FA 2Z8JA 4DHXB 2BX8A 4LUHA 5IJFA 4K71A 5HOZA 3MHHB 1KDXA 2NQOA 2LQHA 1KW2A 2E0XA 2BXKA 3GQXA 2QMCA 1BJ5A 4EMXA 2GUTA 2EFCA 2KWFA 1MIWA 1KXPD 4FJCB 5ID7A 3PLAA 1H9ZA 2XVVA 2BXCA 2XSIA 5GHKA 5BPKA 3MHSB 1J7EA 2BXMA 2BXBA 1O9XA 1LNSA 4GDKB 2K0NA 4N3ZA 2QHBA 3A73A 3M99C 4C31B 4JK4A 1HK4A 1MIYA 4DM0A 3WHRA 1VFIA 5ID9A 4N0FD 4N0UD 1MIVA 4OTUA 2XW1A 3FWBC 2E0YA 2XVUA 2EFEA 1E7CA 1E7EA 2LXTA 4F5UA 4OTTA 1LOTA 3ICXA 3UIVA 1HK2A 4G01A 2VDBA 3V03A 2BXHA 4LUFA 4LA0A 4TQ0A 1E7BA 4K2CA 3LU8A 1TF0A 3W1SA 4G04A 1AO6A 2BXAA 2VUFA 4IW2A 4I9OA 3TDLA 4TQ1A 3ECPA 1E7AA 3VQIA 2I30A 4L9QA 3NVIA 3V09A 4L9KA 1JNBA 3LU7A 1HK3A 2XMOA 2BXQA 3JRYA 4ZCGA 2BXOA 4J2VA 2OZBB 4D7XA 4ZBQA 2JUHA 1FOUA 4FIPB 4ZBRA 4PO0A 2DYMA 2V36A 3SIUB 1J78A 1NT2B 4GDXA 4M70B 3GA9L 5IIUA 1MA9A 1VZSA 1GNIA 2DG5A 3FWCC 2Z8KA 2BXPA 3SIVB 4GG2A 2BXIA 1HA2A 4BY9C 4ZC6A 2DYOA 1BM0A 3WHQA 4LB2A 5GIPA 1UORA 2XW0A 1IJGA 4WA6B 2QM6A 3GQUA 2LQIA 3LU6A 2CKXA 2XVWA 1E7HA 4OR0A 4ZBKA 4Z9OA 2YDFA 2XVQA 2DBXA 4LB9A 3BPJA 3A75A 4GDLB 4ZUXV 1E78A 1HK1A 1MUHA 1GNJA 3CX9A 2BXDA 4IW1A 5GINA 4S1YA 1TXUA 5D7GA 2EFDA 4BKEA 4F5TA 1MUSA 2KBZA 3NVMA 2NNWA 3NMUA 2BXGA 2Z8IA 2I2ZA 3H37A 4NAWB 5IJEA 3H3AA 1SB0A 4L8UA 3KJLA 3SQJA 3V08A 5FUOA 4OT2A 4F5SA 3WHSA 5B5TA 1HK5A 2VUEA 3NVKA 2AJEA 1MM8A 5DQFA 2BXEA 4Z69A 2ROHA 5GIOA 3KIKA 2LXSA 1N5UA
chains in the Genus database with same CATH topology
4W4UB 3G9KD 4FK5B 4E99A 4HGKA 5IFOA 1E7GA 2DBWA 2OT3A 1H5WA 2BXNA 4F5VA 5IJ5A 4G03A 1BKEA 2DBUA 3B9LA 1E7IA 5IIHA 3JQZA 5DBYA 5IIXA 2BXFA 3FNMA 2EFHA 4HGMB 2LOQA 4MBEC 2BXLA 3B9MA 1E7FA 2Z8JA 4DHXB 2BX8A 4LUHA 5IJFA 4K71A 5HOZA 3MHHB 2NQOA 1KW2A 2E0XA 2BXKA 3GQXA 2QMCA 1BJ5A 4EMXA 2EFCA 3PLAA 1MIWA 1KXPD 4FJCB 5ID7A 1H9ZA 2XVVA 2BXCA 2XSIA 5GHKA 5BPKA 3MHSB 1J7EA 2BXMA 2BXBA 1O9XA 1LNSA 4GDKB 4N3ZA 2QHBA 3A73A 3M99C 4C31B 4JK4A 1HK4A 1MIYA 3WHRA 1VFIA 5ID9A 4N0FD 4N0UD 1MIVA 4OTUA 2XW1A 3FWBC 2E0YA 2XVUA 2EFEA 1E7CA 1E7EA 4F5UA 4OTTA 1LOTA 3ICXA 3UIVA 1HK2A 4G01A 2VDBA 3V03A 2BXHA 4LUFA 4LA0A 4TQ0A 1E7BA 4K2CA 3LU8A 1TF0A 3W1SA 4G04A 1AO6A 2BXAA 2VUFA 4IW2A 3TDLA 4TQ1A 1E7AA 3VQIA 2I30A 4L9QA 3NVIA 3V09A 4L9KA 1JNBA 3LU7A 1HK3A 2XMOA 2BXQA 3JRYA 4ZCGA 2BXOA 4J2VA 2OZBB 4ZBQA 2JUHA 1FOUA 4FIPB 4ZBRA 4PO0A 2DYMA 2V36A 3SIUB 1J78A 1NT2B 4GDXA 4M70B 3GA9L 5IIUA 1MA9A 1VZSA 1GNIA 2DG5A 3FWCC 2Z8KA 2BXPA 3SIVB 4GG2A 2BXIA 1HA2A 4BY9C 4ZC6A 2DYOA 1BM0A 3WHQA 4LB2A 5GIPA 1UORA 2XW0A 1IJGA 4WA6B 2QM6A 3GQUA 3LU6A 2CKXA 2XVWA 1E7HA 4OR0A 4ZBKA 4Z9OA 2YDFA 2XVQA 2DBXA 4LB9A 3A75A 4GDLB 4ZUXV 1E78A 1HK1A 1GNJA 3CX9A 2BXDA 4IW1A 5GINA 4S1YA 1TXUA 5D7GA 2EFDA 4BKEA 4F5TA 2KBZA 3NVMA 2NNWA 3NMUA 2BXGA 2Z8IA 2I2ZA 3H37A 4NAWB 5IJEA 3H3AA 4L8UA 3KJLA 3SQJA 3V08A 5FUOA 4OT2A 4F5SA 3WHSA 5B5TA 1HK5A 2VUEA 3NVKA 2AJEA 5DQFA 2BXEA 4Z69A 2ROHA 5GIOA 3KIKA 1N5UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QHB A;  2AJE A;  2CKX A;  2ROH A;  2JUH A; 
#chains in the Genus database with same CATH topology
 4W4U B;  3G9K D;  4FK5 B;  4E99 A;  4HGK A;  5IFO A;  1E7G A;  2DBW A;  2OT3 A;  1H5W A;  2BXN A;  4F5V A;  5IJ5 A;  4G03 A;  1BKE A;  2DBU A;  3B9L A;  1E7I A;  5IIH A;  3JQZ A;  5DBY A;  5IIX A;  2BXF A;  2AGH B;  3FNM A;  2EFH A;  4HGM B;  2LOQ A;  4MBE C;  2BXL A;  3B9M A;  1E7F A;  2Z8J A;  4DHX B;  2BX8 A;  4LUH A;  5IJF A;  4K71 A;  5HOZ A;  3MHH B;  1KDX A;  2NQO A;  2LQH A;  1KW2 A;  2E0X A;  2BXK A;  3GQX A;  2QMC A;  1BJ5 A;  4EMX A;  2GUT A;  2EFC A;  2KWF A;  1MIW A;  1KXP D;  4FJC B;  5ID7 A;  3PLA A;  1H9Z A;  2XVV A;  2BXC A;  2XSI A;  5GHK A;  5BPK A;  3MHS B;  1J7E A;  2BXM A;  2BXB A;  1O9X A;  1LNS A;  4GDK B;  2K0N A;  4N3Z A;  2QHB A;  3A73 A;  3M99 C;  4C31 B;  4JK4 A;  1HK4 A;  1MIY A;  4DM0 A;  3WHR A;  1VFI A;  5ID9 A;  4N0F D;  4N0U D;  1MIV A;  4OTU A;  2XW1 A;  3FWB C;  2E0Y A;  2XVU A;  2EFE A;  1E7C A;  1E7E A;  2LXT A;  4F5U A;  4OTT A;  1LOT A;  3ICX A;  3UIV A;  1HK2 A;  4G01 A;  2VDB A;  3V03 A;  2BXH A;  4LUF A;  4LA0 A;  4TQ0 A;  1E7B A;  4K2C A;  3LU8 A;  1TF0 A;  3W1S A;  4G04 A;  1AO6 A;  2BXA A;  2VUF A;  4IW2 A;  4I9O A;  3TDL A;  4TQ1 A;  3ECP A;  1E7A A;  3VQI A;  2I30 A;  4L9Q A;  3NVI A;  3V09 A;  4L9K A;  1JNB A;  3LU7 A;  1HK3 A;  2XMO A;  2BXQ A;  3JRY A;  4ZCG A;  2BXO A;  4J2V A;  2OZB B;  4D7X A;  4ZBQ A;  2JUH A;  1FOU A;  4FIP B;  4ZBR A;  4PO0 A;  2DYM A;  2V36 A;  3SIU B;  1J78 A;  1NT2 B;  4GDX A;  4M70 B;  3GA9 L;  5IIU A;  1MA9 A;  1VZS A;  1GNI A;  2DG5 A;  3FWC C;  2Z8K A;  2BXP A;  3SIV B;  4GG2 A;  2BXI A;  1HA2 A;  4BY9 C;  4ZC6 A;  2DYO A;  1BM0 A;  3WHQ A;  4LB2 A;  5GIP A;  1UOR A;  2XW0 A;  1IJG A;  4WA6 B;  2QM6 A;  3GQU A;  2LQI A;  3LU6 A;  2CKX A;  2XVW A;  1E7H A;  4OR0 A;  4ZBK A;  4Z9O A;  2YDF A;  2XVQ A;  2DBX A;  4LB9 A;  3BPJ A;  3A75 A;  4GDL B;  4ZUX V;  1E78 A;  1HK1 A;  1MUH A;  1GNJ A;  3CX9 A;  2BXD A;  4IW1 A;  5GIN A;  4S1Y A;  1TXU A;  5D7G A;  2EFD A;  4BKE A;  4F5T A;  1MUS A;  2KBZ A;  3NVM A;  2NNW A;  3NMU A;  2BXG A;  2Z8I A;  2I2Z A;  3H37 A;  4NAW B;  5IJE A;  3H3A A;  1SB0 A;  4L8U A;  3KJL A;  3SQJ A;  3V08 A;  5FUO A;  4OT2 A;  4F5S A;  3WHS A;  5B5T A;  1HK5 A;  2VUE A;  3NVK A;  2AJE A;  1MM8 A;  5DQF A;  2BXE A;  4Z69 A;  2ROH A;  5GIO A;  3KIK A;  2LXS A;  1N5U A; 
#chains in the Genus database with same CATH homology
 4W4U B;  3G9K D;  4FK5 B;  4E99 A;  4HGK A;  5IFO A;  1E7G A;  2DBW A;  2OT3 A;  1H5W A;  2BXN A;  4F5V A;  5IJ5 A;  4G03 A;  1BKE A;  2DBU A;  3B9L A;  1E7I A;  5IIH A;  3JQZ A;  5DBY A;  5IIX A;  2BXF A;  3FNM A;  2EFH A;  4HGM B;  2LOQ A;  4MBE C;  2BXL A;  3B9M A;  1E7F A;  2Z8J A;  4DHX B;  2BX8 A;  4LUH A;  5IJF A;  4K71 A;  5HOZ A;  3MHH B;  2NQO A;  1KW2 A;  2E0X A;  2BXK A;  3GQX A;  2QMC A;  1BJ5 A;  4EMX A;  2EFC A;  3PLA A;  1MIW A;  1KXP D;  4FJC B;  5ID7 A;  1H9Z A;  2XVV A;  2BXC A;  2XSI A;  5GHK A;  5BPK A;  3MHS B;  1J7E A;  2BXM A;  2BXB A;  1O9X A;  1LNS A;  4GDK B;  4N3Z A;  2QHB A;  3A73 A;  3M99 C;  4C31 B;  4JK4 A;  1HK4 A;  1MIY A;  3WHR A;  1VFI A;  5ID9 A;  4N0F D;  4N0U D;  1MIV A;  4OTU A;  2XW1 A;  3FWB C;  2E0Y A;  2XVU A;  2EFE A;  1E7C A;  1E7E A;  4F5U A;  4OTT A;  1LOT A;  3ICX A;  3UIV A;  1HK2 A;  4G01 A;  2VDB A;  3V03 A;  2BXH A;  4LUF A;  4LA0 A;  4TQ0 A;  1E7B A;  4K2C A;  3LU8 A;  1TF0 A;  3W1S A;  4G04 A;  1AO6 A;  2BXA A;  2VUF A;  4IW2 A;  3TDL A;  4TQ1 A;  1E7A A;  3VQI A;  2I30 A;  4L9Q A;  3NVI A;  3V09 A;  4L9K A;  1JNB A;  3LU7 A;  1HK3 A;  2XMO A;  2BXQ A;  3JRY A;  4ZCG A;  2BXO A;  4J2V A;  2OZB B;  4ZBQ A;  2JUH A;  1FOU A;  4FIP B;  4ZBR A;  4PO0 A;  2DYM A;  2V36 A;  3SIU B;  1J78 A;  1NT2 B;  4GDX A;  4M70 B;  3GA9 L;  5IIU A;  1MA9 A;  1VZS A;  1GNI A;  2DG5 A;  3FWC C;  2Z8K A;  2BXP A;  3SIV B;  4GG2 A;  2BXI A;  1HA2 A;  4BY9 C;  4ZC6 A;  2DYO A;  1BM0 A;  3WHQ A;  4LB2 A;  5GIP A;  1UOR A;  2XW0 A;  1IJG A;  4WA6 B;  2QM6 A;  3GQU A;  3LU6 A;  2CKX A;  2XVW A;  1E7H A;  4OR0 A;  4ZBK A;  4Z9O A;  2YDF A;  2XVQ A;  2DBX A;  4LB9 A;  3A75 A;  4GDL B;  4ZUX V;  1E78 A;  1HK1 A;  1GNJ A;  3CX9 A;  2BXD A;  4IW1 A;  5GIN A;  4S1Y A;  1TXU A;  5D7G A;  2EFD A;  4BKE A;  4F5T A;  2KBZ A;  3NVM A;  2NNW A;  3NMU A;  2BXG A;  2Z8I A;  2I2Z A;  3H37 A;  4NAW B;  5IJE A;  3H3A A;  4L8U A;  3KJL A;  3SQJ A;  3V08 A;  5FUO A;  4OT2 A;  4F5S A;  3WHS A;  5B5T A;  1HK5 A;  2VUE A;  3NVK A;  2AJE A;  5DQF A;  2BXE A;  4Z69 A;  2ROH A;  5GIO A;  3KIK A;  1N5U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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