2RQBA

Solution structure of mda5 ctd
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
135
structure length
135
Chain Sequence
GPLGSYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQINGEIICKCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECCLFSDED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Interferon-induced helicase C domain-containing protein 1
publication title Solution Structures of Cytosolic RNA Sensor MDA5 and LGP2 C-terminal Domains: IDENTIFICATION OF THE RNA RECOGNITION LOOP IN RIG-I-LIKE RECEPTORS
pubmed doi rcsb
source organism Homo sapiens
total genus 12
structure length 135
sequence length 135
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2009-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11648 RIG-I_C-RD C-terminal domain of RIG-I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.30 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 2rqbA00
5F98A 3LRNA 3OG8A 3EQTA 5F9HA 4A2XA 4AY2A 3LRRA 3ZD7A 2RQAA 2W4RA 3GA3A 2RMJA 4BPBA 5F9FA 4A2VA 2YKGA 3ZD6A 2QFDA 2QFBA 5E3HA 2RQBA 3NCUA
chains in the Genus database with same CATH superfamily
3P3KA 2LVLA 2LOYA 5F98A 1L1DA 3LRNA 2K8DA 3OG8A 1HXRA 4V2YA 2KZNA 3DJMA 3CXKA 3HCHA 3EQTA 4V2ZA 5F9HA 3EBMA 3HCGA 4A2XA 1YZ1A 4TZUA 4TZ4C 4AY2A 3LRRA 3FACA 3E0MA 4CI1B 4TZCA 2RQAA 2KV1A 3ZD7A 2W4RA 1TXJA 3GA3A 2RMJA 3WX1A 3CEZA 4BPBA 5AMHA 5F9FA 4A2VA 3HCIA 4V31A 3E0OA 2YKGA 3ZD6A 4V30A 2QFDA 1FWQA 2HR9A 2KWBA 2FU5A 1H6QA 4CI2B 2QFBA 3HCJA 3MAOA 5E3HA 2RQBA 4CI3B 3WX2A 3NCUA 1H7YA
chains in the Genus database with same CATH topology
3P3KA 2LVLA 2LOYA 5F98A 3LRNA 3OG8A 1HXRA 3EQTA 3DJMA 5F9HA 3EBMA 4A2XA 1YZ1A 4AY2A 3LRRA 3FACA 2RQAA 3ZD7A 2W4RA 1TXJA 3GA3A 2RMJA 4BPBA 5F9FA 4A2VA 2YKGA 3ZD6A 2QFDA 1FWQA 2HR9A 2KWBA 2FU5A 1H6QA 2QFBA 5E3HA 2RQBA 3NCUA 1H7YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5F98 A;  3LRN A;  3OG8 A;  3EQT A;  5F9H A;  4A2X A;  4AY2 A;  3LRR A;  3ZD7 A;  2RQA A;  2W4R A;  3GA3 A;  2RMJ A;  4BPB A;  5F9F A;  4A2V A;  2YKG A;  3ZD6 A;  2QFD A;  2QFB A;  5E3H A;  2RQB A;  3NCU A; 
#chains in the Genus database with same CATH topology
 3P3K A;  2LVL A;  2LOY A;  5F98 A;  1L1D A;  3LRN A;  2K8D A;  3OG8 A;  1HXR A;  4V2Y A;  2KZN A;  3DJM A;  3CXK A;  3HCH A;  3EQT A;  4V2Z A;  5F9H A;  3EBM A;  3HCG A;  4A2X A;  1YZ1 A;  4TZU A;  4TZ4 C;  4AY2 A;  3LRR A;  3FAC A;  3E0M A;  4CI1 B;  4TZC A;  2RQA A;  2KV1 A;  3ZD7 A;  2W4R A;  1TXJ A;  3GA3 A;  2RMJ A;  3WX1 A;  3CEZ A;  4BPB A;  5AMH A;  5F9F A;  4A2V A;  3HCI A;  4V31 A;  3E0O A;  2YKG A;  3ZD6 A;  4V30 A;  2QFD A;  1FWQ A;  2HR9 A;  2KWB A;  2FU5 A;  1H6Q A;  4CI2 B;  2QFB A;  3HCJ A;  3MAO A;  5E3H A;  2RQB A;  4CI3 B;  3WX2 A;  3NCU A;  1H7Y A; 
#chains in the Genus database with same CATH homology
 3P3K A;  2LVL A;  2LOY A;  5F98 A;  3LRN A;  3OG8 A;  1HXR A;  3EQT A;  3DJM A;  5F9H A;  3EBM A;  4A2X A;  1YZ1 A;  4AY2 A;  3LRR A;  3FAC A;  2RQA A;  3ZD7 A;  2W4R A;  1TXJ A;  3GA3 A;  2RMJ A;  4BPB A;  5F9F A;  4A2V A;  2YKG A;  3ZD6 A;  2QFD A;  1FWQ A;  2HR9 A;  2KWB A;  2FU5 A;  1H6Q A;  2QFB A;  5E3H A;  2RQB A;  3NCU A;  1H7Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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