2RS14

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule tags Virus
source organism Human rhinovirus sp.
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2rs1400
1RUI4 1NCQD 1RUE4 1RVF4 1VBE4 1VBC4 1HRV4 1RUF4 1POV0 1VRH4 2RS34 1EAH4 2R074 1K5MD 4PDWD 1AR74 1ASJ4 4Q4X4 4Q4V4 1VBB4 2R064 1RUH4 1PO24 2RR14 1H8TD 3JD74 1RUD4 1RMU4 1Z7S4 1NA1D 1PO14 1R094 4RHV4 1HRI4 1OOPD 1PVC4 3J8F4 2HWC4 4Q4Y4 1VBA4 1MQTD 1AL24 2HWB4 1EV14 1RUJ4 2RMU4 1PIV4 3JBG4 2R044 2X5ID 1AR94 1HXS4 1R084 1AR84 1RHI4 1D4M4 1RUC4 1BEV4 1COV4 1AR64 1RUG4 2PLV4 1VBD4 2RM24 2RS54 4Q4W4 4GB34 2RS14
chains in the Genus database with same CATH superfamily
3FI7A 1NENA 1RVF4 1VBE4 1XHZA 4YSYA 2EX3A 2PZSA 2RS34 3P4RA 3VRAA 1ASJ4 3JD74 4YTNA 3AEFA 1HRI4 3J8F4 4YSZA 2HWB4 1XHXA 1KF6A 3VR8A 1NEKA 5C3JA 3P4SA 5C2TA 1ZP0A 3AE1A 4KX6A 1KFYA 1RUF4 1POV0 2R074 2H88A 4PDWD 1AR74 4Q4X4 1VBB4 1YQ3A 1H8TD 2PYJA 1RUD4 3AE8A 1RMU4 1L0VA 1R094 1OOPD 1PVC4 4Q4Y4 2R7FA 1VBA4 1MQTD 1EV14 1RUJ4 3JBG4 3AECA 4YTMA 2WU2A 2WDQA 1AR84 3AEAA 1D4M4 1COV4 2B76A 3AE6A 1AR64 4Q4W4 2PLV4 2RS54 2RM24 2H89A 2WU5A 3GQKA 3VR9A 3AEGA 3AE4A 3AEDA 2WP9A 2PW9A 1RUI4 1NCQD 1VBC4 1HRV4 1VRH4 1EAH4 1K5MD 3AEEA 4Q4V4 3P4QA 3SUCA 2WDVA 1Z7S4 4YTPA 2ACZA 2RMU4 1AL24 1PIV4 2R044 1AR94 1HXS4 3SFEA 1RHI4 1BEV4 1RUG4 2WDRA 3GQHA 2RS14 4GB34 3SFDA 4YXDA 1RUE4 1YQ4A 2PYLA 2WQYA 2R064 4YT0A 1RUH4 1PO24 2RR14 3AE2A 3AE9A 1XI1A 3P4PA 1NA1D 1PO14 3AE7A 4RHV4 3AE3A 2HWC4 3AEBA 3AE5A 3CIRA 4YSXA 2X5ID 1R084 3VRBA 2PY5A 3ABVA 1ZOYA 1RUC4 1VBD4 2FBWA 2WS3A
chains in the Genus database with same CATH topology
1RUI4 1NCQD 1RUE4 1RVF4 1VBE4 1VBC4 1HRV4 1RUF4 1POV0 1VRH4 2RS34 1EAH4 2R074 1K5MD 4PDWD 1AR74 1ASJ4 4Q4X4 4Q4V4 1VBB4 2R064 1RUH4 1PO24 2RR14 1H8TD 3JD74 1RUD4 1RMU4 1Z7S4 1NA1D 1PO14 1R094 4RHV4 1HRI4 1OOPD 1PVC4 3J8F4 2HWC4 4Q4Y4 1VBA4 1MQTD 1AL24 2HWB4 1EV14 1RUJ4 2RMU4 1PIV4 3JBG4 2R044 2X5ID 1AR94 1HXS4 1R084 1AR84 1RHI4 1D4M4 1RUC4 1BEV4 1COV4 1AR64 1RUG4 2PLV4 1VBD4 2RM24 2RS54 4Q4W4 4GB34 2RS14
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUI 4;  1NCQ D;  1RUE 4;  1RVF 4;  1VBE 4;  1VBC 4;  1HRV 4;  1RUF 4;  1POV 0;  1VRH 4;  2RS3 4;  1EAH 4;  2R07 4;  1K5M D;  4PDW D;  1AR7 4;  1ASJ 4;  4Q4X 4;  4Q4V 4;  1VBB 4;  2R06 4;  1RUH 4;  1PO2 4;  2RR1 4;  1H8T D;  3JD7 4;  1RUD 4;  1RMU 4;  1Z7S 4;  1NA1 D;  1PO1 4;  1R09 4;  4RHV 4;  1HRI 4;  1OOP D;  1PVC 4;  3J8F 4;  2HWC 4;  4Q4Y 4;  1VBA 4;  1MQT D;  1AL2 4;  2HWB 4;  1EV1 4;  1RUJ 4;  2RMU 4;  1PIV 4;  3JBG 4;  2R04 4;  2X5I D;  1AR9 4;  1HXS 4;  1R08 4;  1AR8 4;  1RHI 4;  1D4M 4;  1RUC 4;  1BEV 4;  1COV 4;  1AR6 4;  1RUG 4;  2PLV 4;  1VBD 4;  2RM2 4;  2RS5 4;  4Q4W 4;  4GB3 4;  2RS1 4; 
#chains in the Genus database with same CATH topology
 3FI7 A;  1NEN A;  1RVF 4;  1VBE 4;  1XHZ A;  4YSY A;  2EX3 A;  2PZS A;  2RS3 4;  3P4R A;  3VRA A;  1ASJ 4;  3JD7 4;  4YTN A;  3AEF A;  1HRI 4;  3J8F 4;  4YSZ A;  2HWB 4;  1XHX A;  1KF6 A;  3VR8 A;  1NEK A;  5C3J A;  3P4S A;  5C2T A;  1ZP0 A;  3AE1 A;  4KX6 A;  1KFY A;  1RUF 4;  1POV 0;  2R07 4;  2H88 A;  4PDW D;  1AR7 4;  4Q4X 4;  1VBB 4;  1YQ3 A;  1H8T D;  2PYJ A;  1RUD 4;  3AE8 A;  1RMU 4;  1L0V A;  1R09 4;  1OOP D;  1PVC 4;  4Q4Y 4;  2R7F A;  1VBA 4;  1MQT D;  1EV1 4;  1RUJ 4;  3JBG 4;  3AEC A;  4YTM A;  2WU2 A;  2WDQ A;  1AR8 4;  3AEA A;  1D4M 4;  1COV 4;  2B76 A;  3AE6 A;  1AR6 4;  4Q4W 4;  2PLV 4;  2RS5 4;  2RM2 4;  2H89 A;  2WU5 A;  3GQK A;  3VR9 A;  3AEG A;  3AE4 A;  3AED A;  2WP9 A;  2PW9 A;  1RUI 4;  1NCQ D;  1VBC 4;  1HRV 4;  1VRH 4;  1EAH 4;  1K5M D;  3AEE A;  4Q4V 4;  3P4Q A;  3SUC A;  2WDV A;  1Z7S 4;  4YTP A;  2ACZ A;  2RMU 4;  1AL2 4;  1PIV 4;  2R04 4;  1AR9 4;  1HXS 4;  3SFE A;  1RHI 4;  1BEV 4;  1RUG 4;  2WDR A;  3GQH A;  2RS1 4;  4GB3 4;  3SFD A;  4YXD A;  1RUE 4;  1YQ4 A;  2PYL A;  2WQY A;  2R06 4;  4YT0 A;  1RUH 4;  1PO2 4;  2RR1 4;  3AE2 A;  3AE9 A;  1XI1 A;  3P4P A;  1NA1 D;  1PO1 4;  3AE7 A;  4RHV 4;  3AE3 A;  2HWC 4;  3AEB A;  3AE5 A;  3CIR A;  4YSX A;  2X5I D;  1R08 4;  3VRB A;  2PY5 A;  3ABV A;  1ZOY A;  1RUC 4;  1VBD 4;  2FBW A;  2WS3 A; 
#chains in the Genus database with same CATH homology
 1RUI 4;  1NCQ D;  1RUE 4;  1RVF 4;  1VBE 4;  1VBC 4;  1HRV 4;  1RUF 4;  1POV 0;  1VRH 4;  2RS3 4;  1EAH 4;  2R07 4;  1K5M D;  4PDW D;  1AR7 4;  1ASJ 4;  4Q4X 4;  4Q4V 4;  1VBB 4;  2R06 4;  1RUH 4;  1PO2 4;  2RR1 4;  1H8T D;  3JD7 4;  1RUD 4;  1RMU 4;  1Z7S 4;  1NA1 D;  1PO1 4;  1R09 4;  4RHV 4;  1HRI 4;  1OOP D;  1PVC 4;  3J8F 4;  2HWC 4;  4Q4Y 4;  1VBA 4;  1MQT D;  1AL2 4;  2HWB 4;  1EV1 4;  1RUJ 4;  2RMU 4;  1PIV 4;  3JBG 4;  2R04 4;  2X5I D;  1AR9 4;  1HXS 4;  1R08 4;  1AR8 4;  1RHI 4;  1D4M 4;  1RUC 4;  1BEV 4;  1COV 4;  1AR6 4;  1RUG 4;  2PLV 4;  1VBD 4;  2RM2 4;  2RS5 4;  4Q4W 4;  4GB3 4;  2RS1 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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