2RVHA

Nmr structure of eif1
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
108
structure length
108
Chain Sequence
MSIENLKSFDPFADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords Eukaryotic translation initiation factor eIF-1
publication title Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5
pubmed doi rcsb
source organism Saccharomyces cerevisiae s288c
total genus 22
structure length 108
sequence length 108
ec nomenclature
pdb deposition date 2015-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01253 SUI1 Translation initiation factor SUI1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.780.10 Alpha Beta 2-Layer Sandwich Translation Initiation Factor Eif1 SUI1-like domain 2rvhA00
3JAMj 3J80j 3J81m 2RVHA 1D1RA 2OGHA 4MO0A 2IF1A 4V1Al 3J7Yg
chains in the Genus database with same CATH superfamily
3JAMj 3J80j 3J81m 2RVHA 1D1RA 1RIFA 2OGHA 3J7Yg 4MO0A 2IF1A 2KX2A 4V1Al 2OCAA
chains in the Genus database with same CATH topology
3JAMj 3J80j 3J81m 2RVHA 1D1RA 2OGHA 4MO0A 2IF1A 4V1Al 3J7Yg
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JAM j;  3J80 j;  3J81 m;  2RVH A;  1D1R A;  2OGH A;  4MO0 A;  2IF1 A;  4V1A l;  3J7Y g; 
#chains in the Genus database with same CATH topology
 3JAM j;  3J80 j;  3J81 m;  2RVH A;  1D1R A;  1RIF A;  2OGH A;  3J7Y g;  4MO0 A;  2IF1 A;  2KX2 A;  4V1A l;  2OCA A; 
#chains in the Genus database with same CATH homology
 3JAM j;  3J80 j;  3J81 m;  2RVH A;  1D1R A;  2OGH A;  4MO0 A;  2IF1 A;  4V1A l;  3J7Y g; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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