2UUUA

Alkyldihydroxyacetonephosphate synthase in p212121
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
581
structure length
550
Chain Sequence
MGSPKEHIDLYQQIKWNGWGDTRKFLHQLKPSGTIAMTTPEVSSVPLPSLRGFIKKELTKPFVLDETPALQIENIHVDPPKQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELRGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNENKDMAQYIEAKKLMTDIIFKYGGSLSRGWINVYRSLKETIDPKDICNPRKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
publication title The Crucial Step in Ether Phospholipid Biosynthesis: Structural Basis of a Noncanonical Reaction Associated with a Peroxisomal Disorder.
pubmed doi rcsb
source organism Dictyostelium discoideum
molecule tags Transferase
total genus 181
structure length 550
sequence length 581
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.26: Alkylglycerone-phosphate synthase.
pdb deposition date 2007-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2uuuA02
3.40.462.40 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2uuuA01
2Y3SA 3RJAA 2WDWA 5L6FA 2IPIA 3RJ8A 5AWVA 2Y4GA 2UUUA 3HSUA 5L6GA 3PQBA 2UUVA 5K8EA 2Y08A 5I1WA 5I1VA 3POPA 2Y3RA
chains in the Genus database with same CATH superfamily
1FFVC 2Y3SA 1W1LA 3RJAA 2I0KA 2RK5A 5AE1A 4PZFA 5L6FA 1FIQB 2R2ZA 3NRZB 3RJ8A 4JAYA 5AWVA 3SR6B 2Y4GA 5HMRA 1W1QA 3HSUA 5L6GA 1W1JA 4EC3A 2W3RA 2Q4WA 2P13A 2AXRA 1MBTA 1F0XA 2UUVA 4PWBA 3S1EA 3S1FA 2MBRA 5AE3A 5FXPA 1WVFA 3FW7A 2W3SA 4HG0A 5D79A 3BW7A 1AHUA 1DZNA 1E0YA 4JB1A 1SB3B 1VAOA 2W55A 2P4PA 3S1DA 3AM9A 4BCAA 3D2DA 1T3QC 3W8XA 4PVHA 2O3GA 1FO4A 3PM9A 2VAOA 2VFRA 3DQ0A 1WVEA 2NQWA 1N5XA 2P3HA 3NS1B 2BVGA 3PQBA 1ZR6A 5HQXA 1N60C 1E8FA 1MBBA 1DIQA 1V97A 1QLUA 2QKNA 5HHZA 3W8ZA 1W1KA 1UXYA 5I1WA 5FXEA 3HRDC 1RM6B 1W1SA 1W1MA 3D2HA 2Q85A 4ML8A 2R8DA 1JRPA 3C0PA 3TSJA 3VTEA 5ADZA 4DNSA 5AE2A 4UD8A 1AHZA 1N62C 2WDWA 1N5WC 2BVFA 1N63C 2VFUA 3FWAA 2UUUA 1N61C 2PLSA 2VFTA 1VDVA 3TSHA 2GQUA 4BC7A 4PVJA 2OAIA 4BBYA 1JROA 3FW8A 1I19A 4PYTA 2BVHA 3B9JB 2QPMA 3I99A 3AMZA 4XLOA 5FXFA 2E3TA 4PWCA 5FXDA 4MLAA 3KJMA 5G5HB 1E8GA 3JS8A 3POPA 3ETRB 5I1VA 1ZXIC 1FFUC 3LLBA 4ZOHB 1W1RA 2Y3RA 4BC9A 3NVVB 1QLTA 2IPIA 1AHVA 2VFSA 3GSYA 3D2JA 1E8HA 3NVYB 3S1CA 2W54A 4PVEA 5K8EA 2Y08A 3NVWB 1W1OA 3AN1A 4OALA 4O95A 1WYGA 2GQTA 4PVKA 3W8WA 1HSKA 3LAEA 2PLIA 2VFVA 3FW9A 3TX1A 3NVZB 2YVSA 2EXRA 5G5GB 1DIIA 3EUB3 3DEDA
chains in the Genus database with same CATH topology
1FFVC 2Y3SA 1W1LA 3RJAA 2I0KA 2RK5A 5AE1A 4PZFA 5L6FA 1FIQB 2R2ZA 3NRZB 3RJ8A 4JAYA 5AWVA 3SR6B 2Y4GA 5HMRA 1W1QA 3HSUA 5L6GA 1W1JA 4EC3A 2W3RA 2Q4WA 2P13A 2AXRA 1MBTA 1F0XA 2UUVA 4PWBA 3S1EA 3S1FA 2MBRA 5AE3A 5FXPA 1WVFA 3FW7A 2W3SA 4HG0A 5D79A 3BW7A 1AHUA 1DZNA 1E0YA 4JB1A 1SB3B 1VAOA 2W55A 2P4PA 3S1DA 3AM9A 4BCAA 3D2DA 1T3QC 3W8XA 4PVHA 2O3GA 1FO4A 3PM9A 2VAOA 2VFRA 3DQ0A 1WVEA 2NQWA 1N5XA 2P3HA 3NS1B 2BVGA 3PQBA 1ZR6A 5HQXA 1N60C 1E8FA 1MBBA 1DIQA 1V97A 1QLUA 2QKNA 5HHZA 3W8ZA 1W1KA 1UXYA 5I1WA 5FXEA 3HRDC 1RM6B 1W1SA 1W1MA 3D2HA 2Q85A 4ML8A 2R8DA 1JRPA 3C0PA 3TSJA 3VTEA 5ADZA 4DNSA 5AE2A 4UD8A 1AHZA 1N62C 2WDWA 1N5WC 2BVFA 1N63C 2VFUA 3FWAA 2UUUA 1N61C 2PLSA 2VFTA 1VDVA 3TSHA 2GQUA 4BC7A 4PVJA 2OAIA 4BBYA 1JROA 3FW8A 1I19A 4PYTA 2BVHA 3B9JB 2QPMA 3I99A 3AMZA 4XLOA 5FXFA 2E3TA 4PWCA 5FXDA 4MLAA 3KJMA 5G5HB 1E8GA 3JS8A 3POPA 3ETRB 5I1VA 1ZXIC 1FFUC 3LLBA 4ZOHB 1W1RA 2Y3RA 4BC9A 3NVVB 1QLTA 2IPIA 1AHVA 2VFSA 3GSYA 3D2JA 1E8HA 3NVYB 3S1CA 2W54A 4PVEA 5K8EA 2Y08A 3NVWB 1W1OA 3AN1A 4OALA 4O95A 1WYGA 2GQTA 4PVKA 3W8WA 1HSKA 3LAEA 2PLIA 2VFVA 3FW9A 3TX1A 3NVZB 2YVSA 2EXRA 5G5GB 1DIIA 3EUB3 3DEDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y3S A;  3RJA A;  2WDW A;  5L6F A;  2IPI A;  3RJ8 A;  5AWV A;  2Y4G A;  2UUU A;  3HSU A;  5L6G A;  3PQB A;  2UUV A;  5K8E A;  2Y08 A;  5I1W A;  5I1V A;  3POP A;  2Y3R A; 
#chains in the Genus database with same CATH topology
 1FFV C;  2Y3S A;  1W1L A;  3RJA A;  2I0K A;  2RK5 A;  5AE1 A;  4PZF A;  5L6F A;  1FIQ B;  2R2Z A;  3NRZ B;  3RJ8 A;  4JAY A;  5AWV A;  3SR6 B;  2Y4G A;  5HMR A;  1W1Q A;  3HSU A;  5L6G A;  1W1J A;  4EC3 A;  2W3R A;  2Q4W A;  2P13 A;  2AXR A;  1MBT A;  1F0X A;  2UUV A;  4PWB A;  3S1E A;  3S1F A;  2MBR A;  5AE3 A;  5FXP A;  1WVF A;  3FW7 A;  2W3S A;  4HG0 A;  5D79 A;  3BW7 A;  1AHU A;  1DZN A;  1E0Y A;  4JB1 A;  1SB3 B;  1VAO A;  2W55 A;  2P4P A;  3S1D A;  3AM9 A;  4BCA A;  3D2D A;  1T3Q C;  3W8X A;  4PVH A;  2O3G A;  1FO4 A;  3PM9 A;  2VAO A;  2VFR A;  3DQ0 A;  1WVE A;  2NQW A;  1N5X A;  2P3H A;  3NS1 B;  2BVG A;  3PQB A;  1ZR6 A;  5HQX A;  1N60 C;  1E8F A;  1MBB A;  1DIQ A;  1V97 A;  1QLU A;  2QKN A;  5HHZ A;  3W8Z A;  1W1K A;  1UXY A;  5I1W A;  5FXE A;  3HRD C;  1RM6 B;  1W1S A;  1W1M A;  3D2H A;  2Q85 A;  4ML8 A;  2R8D A;  1JRP A;  3C0P A;  3TSJ A;  3VTE A;  5ADZ A;  4DNS A;  5AE2 A;  4UD8 A;  1AHZ A;  1N62 C;  2WDW A;  1N5W C;  2BVF A;  1N63 C;  2VFU A;  3FWA A;  2UUU A;  1N61 C;  2PLS A;  2VFT A;  1VDV A;  3TSH A;  2GQU A;  4BC7 A;  4PVJ A;  2OAI A;  4BBY A;  1JRO A;  3FW8 A;  1I19 A;  4PYT A;  2BVH A;  3B9J B;  2QPM A;  3I99 A;  3AMZ A;  4XLO A;  5FXF A;  2E3T A;  4PWC A;  5FXD A;  4MLA A;  3KJM A;  5G5H B;  1E8G A;  3JS8 A;  3POP A;  3ETR B;  5I1V A;  1ZXI C;  1FFU C;  3LLB A;  4ZOH B;  1W1R A;  2Y3R A;  4BC9 A;  3NVV B;  1QLT A;  2IPI A;  1AHV A;  2VFS A;  3GSY A;  3D2J A;  1E8H A;  3NVY B;  3S1C A;  2W54 A;  4PVE A;  5K8E A;  2Y08 A;  3NVW B;  1W1O A;  3AN1 A;  4OAL A;  4O95 A;  1WYG A;  2GQT A;  4PVK A;  3W8W A;  1HSK A;  3LAE A;  2PLI A;  2VFV A;  3FW9 A;  3TX1 A;  3NVZ B;  2YVS A;  2EXR A;  5G5G B;  1DII A;  3EUB 3;  3DED A; 
#chains in the Genus database with same CATH homology
 1FFV C;  2Y3S A;  1W1L A;  3RJA A;  2I0K A;  2RK5 A;  5AE1 A;  4PZF A;  5L6F A;  1FIQ B;  2R2Z A;  3NRZ B;  3RJ8 A;  4JAY A;  5AWV A;  3SR6 B;  2Y4G A;  5HMR A;  1W1Q A;  3HSU A;  5L6G A;  1W1J A;  4EC3 A;  2W3R A;  2Q4W A;  2P13 A;  2AXR A;  1MBT A;  1F0X A;  2UUV A;  4PWB A;  3S1E A;  3S1F A;  2MBR A;  5AE3 A;  5FXP A;  1WVF A;  3FW7 A;  2W3S A;  4HG0 A;  5D79 A;  3BW7 A;  1AHU A;  1DZN A;  1E0Y A;  4JB1 A;  1SB3 B;  1VAO A;  2W55 A;  2P4P A;  3S1D A;  3AM9 A;  4BCA A;  3D2D A;  1T3Q C;  3W8X A;  4PVH A;  2O3G A;  1FO4 A;  3PM9 A;  2VAO A;  2VFR A;  3DQ0 A;  1WVE A;  2NQW A;  1N5X A;  2P3H A;  3NS1 B;  2BVG A;  3PQB A;  1ZR6 A;  5HQX A;  1N60 C;  1E8F A;  1MBB A;  1DIQ A;  1V97 A;  1QLU A;  2QKN A;  5HHZ A;  3W8Z A;  1W1K A;  1UXY A;  5I1W A;  5FXE A;  3HRD C;  1RM6 B;  1W1S A;  1W1M A;  3D2H A;  2Q85 A;  4ML8 A;  2R8D A;  1JRP A;  3C0P A;  3TSJ A;  3VTE A;  5ADZ A;  4DNS A;  5AE2 A;  4UD8 A;  1AHZ A;  1N62 C;  2WDW A;  1N5W C;  2BVF A;  1N63 C;  2VFU A;  3FWA A;  2UUU A;  1N61 C;  2PLS A;  2VFT A;  1VDV A;  3TSH A;  2GQU A;  4BC7 A;  4PVJ A;  2OAI A;  4BBY A;  1JRO A;  3FW8 A;  1I19 A;  4PYT A;  2BVH A;  3B9J B;  2QPM A;  3I99 A;  3AMZ A;  4XLO A;  5FXF A;  2E3T A;  4PWC A;  5FXD A;  4MLA A;  3KJM A;  5G5H B;  1E8G A;  3JS8 A;  3POP A;  3ETR B;  5I1V A;  1ZXI C;  1FFU C;  3LLB A;  4ZOH B;  1W1R A;  2Y3R A;  4BC9 A;  3NVV B;  1QLT A;  2IPI A;  1AHV A;  2VFS A;  3GSY A;  3D2J A;  1E8H A;  3NVY B;  3S1C A;  2W54 A;  4PVE A;  5K8E A;  2Y08 A;  3NVW B;  1W1O A;  3AN1 A;  4OAL A;  4O95 A;  1WYG A;  2GQT A;  4PVK A;  3W8W A;  1HSK A;  3LAE A;  2PLI A;  2VFV A;  3FW9 A;  3TX1 A;  3NVZ B;  2YVS A;  2EXR A;  5G5G B;  1DII A;  3EUB 3;  3DED A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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