2V04A

Crystal structure of choline binding protein f from streptococcus pneumoniae
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
311
structure length
311
Chain Sequence
NTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALAVNTTVDGYSVNYNGEWVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Cbpf, a Bifunctional Choline-Binding Protein and Autolysis Regulator from Streptococcus Pneumoniae.
pubmed doi rcsb
molecule tags Lipid binding protein
source organism Streptococcus pneumoniae
molecule keywords CHOLINE BINDING PROTEIN F
total genus 56
structure length 311
sequence length 311
ec nomenclature
pdb deposition date 2007-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01473 CW_binding_1 Putative cell wall binding repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2v04A02
2.10.270.20 Mainly Beta Ribbon left handed beta-beta-3-solenoid left handed beta-beta-3-solenoid 2v04A01
2IXVA 4X36A 4NC0A 4TVCA 4NBXA 3HZ3A 2X8MA 4TTUA 2X8OA 4NC2A 1H09A 3TTQA 2F6EA 2J8FA 1GVMA 1OBAA 2BMLA 4NBYA 1HCXA 3TTOA 4NBZA 3HIAA 4TVDA 2J8GA 2V04A 2G7CA 1H8GA 2QJ6A 2V05A 3KLLA 4AYGA 2VYUA 2X8PA 2IXUA 3KLKA
chains in the Genus database with same CATH superfamily
2IXVA 4X36A 4NC0A 4TVCA 4NBXA 3HZ3A 2X8MA 4TTUA 2X8OA 4NC2A 1H09A 3TTQA 2F6EA 2J8FA 1GVMA 1OBAA 2BMLA 4NBYA 1HCXA 3TTOA 4NBZA 3HIAA 4TVDA 2J8GA 2V04A 2G7CA 1H8GA 2QJ6A 2V05A 3KLLA 4AYGA 2VYUA 2X8PA 2IXUA 3KLKA
chains in the Genus database with same CATH topology
2IXVA 4X36A 4NC0A 4TVCA 4NBXA 3HZ3A 2X8MA 4TTUA 2X8OA 4NC2A 1H09A 3TTQA 2F6EA 2J8FA 1GVMA 1OBAA 2BMLA 4NBYA 1HCXA 3TTOA 4NBZA 3HIAA 4TVDA 2J8GA 2V04A 2G7CA 1H8GA 2QJ6A 2V05A 3KLLA 4AYGA 2VYUA 2X8PA 2IXUA 3KLKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IXV A;  4X36 A;  4NC0 A;  4TVC A;  4NBX A;  3HZ3 A;  2X8M A;  4TTU A;  2X8O A;  4NC2 A;  1H09 A;  3TTQ A;  2F6E A;  2J8F A;  1GVM A;  1OBA A;  2BML A;  4NBY A;  1HCX A;  3TTO A;  4NBZ A;  3HIA A;  4TVD A;  2J8G A;  2V04 A;  2G7C A;  1H8G A;  2QJ6 A;  2V05 A;  3KLL A;  4AYG A;  2VYU A;  2X8P A;  2IXU A;  3KLK A; 
#chains in the Genus database with same CATH topology
 2IXV A;  4X36 A;  4NC0 A;  4TVC A;  4NBX A;  3HZ3 A;  2X8M A;  4TTU A;  2X8O A;  4NC2 A;  1H09 A;  3TTQ A;  2F6E A;  2J8F A;  1GVM A;  1OBA A;  2BML A;  4NBY A;  1HCX A;  3TTO A;  4NBZ A;  3HIA A;  4TVD A;  2J8G A;  2V04 A;  2G7C A;  1H8G A;  2QJ6 A;  2V05 A;  3KLL A;  4AYG A;  2VYU A;  2X8P A;  2IXU A;  3KLK A; 
#chains in the Genus database with same CATH homology
 2IXV A;  4X36 A;  4NC0 A;  4TVC A;  4NBX A;  3HZ3 A;  2X8M A;  4TTU A;  2X8O A;  4NC2 A;  1H09 A;  3TTQ A;  2F6E A;  2J8F A;  1GVM A;  1OBA A;  2BML A;  4NBY A;  1HCX A;  3TTO A;  4NBZ A;  3HIA A;  4TVD A;  2J8G A;  2V04 A;  2G7C A;  1H8G A;  2QJ6 A;  2V05 A;  3KLL A;  4AYG A;  2VYU A;  2X8P A;  2IXU A;  3KLK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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