2V0RA

Crystal structure of a hairpin exchange variant (ltx) of the targeting line-1 retrotransposon endonuclease
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
235
structure length
235
Chain Sequence
SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTYVRVRDGHVSQSKIDHIVGSKALLSKCKRTEIITNYLSDHSAIKLELR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords LTX
publication title Determinants for DNA Target Structure Selectivity of the Human Line-1 Retrotransposon Endonuclease
pubmed doi rcsb
source organism Homo sapiens
total genus 70
structure length 235
sequence length 235
chains with identical sequence B
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2007-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 2v0rA00
4B5HA 2V0RA 4F1RA 2J63A 1DEWA 2DNJA 3NGQA 2F2FB 2O3HA 3FZIA 3G6SA 4B5IA 3G2CA 2VOAA 4B5MA 3U8UA 4AWNA 4FVAA 1DE8A 2JC4A 4B5GA 5CFGA 4L20A 5DFHA 3MTCA 4RUWA 4B5FA 4QH9A 4A9CA 5J3SA 5J42A 4L21A 4F1HA 5DFFA 4GEWA 4F1HB 1ATND 1VYBA 1DE9A 2V0SA 4B5JA 3DNIA 3I5VA 4F1IA 4LNDA 3MPRA 3W2YA 3G1KA 5J3ZA 3G3CA 5J8NA 5EWTA 1I9ZA 3I48A 5INLA 4FPVA 5INNA 2DDSA 4C1RA 5INQA 5INOA 3K55A 3G91A 3G38A 2A3ZB 3G0RA 4GZ1A 3I41A 4GZ0A 5INPA 4K6LF 3NR8A 1SR4B 5A7IA 3W2XA 2DDTA 3G0AA 4JG3A 4GYZA 5INKA 3G00A 3NGOA 1YJHA 2UYRX 3G3YA 2A41B 4GZ2A 1BIXA 3G8VA 5DFIA 2D1KB 4CMLA 5HT2A 4QHEA 3L1WA 2O3CA 5DG0A 4CMNA 4IEMA 1HD7A 1WDUA 2JC5A 3GA6A 4PUQA 1NTFA 5J3PA 1Y21A 5DFJA 2F1NA 3CJCD 1AKOA 2EI9A 3N9VA 1E9NA 2A42B 5DV4A 2XSWA 3W3DB 3WCXA 3G4TA 2A40B 3TEBA 4QHDA 2DDRA 5CFEA 5INMA 1I9YA 2ISIA 5DV2A 4L1YA 4L1ZA 3NGNA 1ZWXA 3G2DA 1DNKA 1SI6X 5A7JA 2IMQX 3I46A
chains in the Genus database with same CATH superfamily
4B5HA 2V0RA 4F1RA 2J63A 1DEWA 2DNJA 3NGQA 2F2FB 2O3HA 3FZIA 3G6SA 4B5IA 3G2CA 2VOAA 4B5MA 3U8UA 4AWNA 4FVAA 1DE8A 2JC4A 4B5GA 5CFGA 4L20A 5DFHA 3MTCA 4RUWA 4B5FA 4QH9A 4A9CA 5J3SA 5J42A 4L21A 4F1HA 5DFFA 4GEWA 4F1HB 1ATND 1VYBA 1DE9A 2V0SA 4B5JA 3DNIA 3I5VA 4F1IA 4LNDA 3MPRA 3W2YA 3G1KA 5J3ZA 3G3CA 5J8NA 5EWTA 1I9ZA 3I48A 5INLA 4FPVA 5INNA 2DDSA 4C1RA 5INQA 5INOA 3K55A 3G91A 3G38A 2A3ZB 3G0RA 4GZ1A 3I41A 4GZ0A 5INPA 4K6LF 3NR8A 1SR4B 5A7IA 3W2XA 2DDTA 3G0AA 4JG3A 4GYZA 5INKA 3G00A 3NGOA 1YJHA 2UYRX 3G3YA 2A41B 4GZ2A 1BIXA 3G8VA 5DFIA 2D1KB 4CMLA 5HT2A 4QHEA 3L1WA 2O3CA 5DG0A 4CMNA 4IEMA 1HD7A 1WDUA 2JC5A 3GA6A 4PUQA 1NTFA 5J3PA 1Y21A 5DFJA 2F1NA 3CJCD 1AKOA 2EI9A 3N9VA 1E9NA 2A42B 5DV4A 2XSWA 3W3DB 3WCXA 3G4TA 2A40B 3TEBA 4QHDA 2DDRA 5CFEA 5INMA 1I9YA 2ISIA 5DV2A 4L1YA 4L1ZA 3NGNA 1ZWXA 3G2DA 1DNKA 1SI6X 5A7JA 2IMQX 3I46A
chains in the Genus database with same CATH topology
4B5HA 2V0RA 4F1RA 2J63A 1DEWA 2DNJA 3NGQA 2F2FB 2O3HA 3FZIA 3G6SA 4B5IA 3G2CA 2VOAA 4B5MA 3U8UA 4AWNA 4FVAA 1DE8A 2JC4A 4B5GA 5CFGA 4L20A 5DFHA 3MTCA 4RUWA 4B5FA 4QH9A 4A9CA 5J3SA 5J42A 4L21A 4F1HA 5DFFA 4GEWA 4F1HB 1ATND 1VYBA 1DE9A 2V0SA 4B5JA 3DNIA 3I5VA 4F1IA 4LNDA 3MPRA 3W2YA 3G1KA 5J3ZA 3G3CA 5J8NA 5EWTA 1I9ZA 3I48A 5INLA 4FPVA 5INNA 2DDSA 4C1RA 5INQA 5INOA 3K55A 3G91A 3G38A 2A3ZB 3G0RA 4GZ1A 3I41A 4GZ0A 5INPA 4K6LF 3NR8A 1SR4B 5A7IA 3W2XA 2DDTA 3G0AA 4JG3A 4GYZA 5INKA 3G00A 3NGOA 1YJHA 2UYRX 3G3YA 2A41B 4GZ2A 1BIXA 3G8VA 5DFIA 2D1KB 4CMLA 5HT2A 4QHEA 3L1WA 2O3CA 5DG0A 4CMNA 4IEMA 1HD7A 1WDUA 2JC5A 3GA6A 4PUQA 1NTFA 5J3PA 1Y21A 5DFJA 2F1NA 3CJCD 1AKOA 2EI9A 3N9VA 1E9NA 2A42B 5DV4A 2XSWA 3W3DB 3WCXA 3G4TA 2A40B 3TEBA 4QHDA 2DDRA 5CFEA 5INMA 1I9YA 2ISIA 5DV2A 4L1YA 4L1ZA 3NGNA 1ZWXA 3G2DA 1DNKA 1SI6X 5A7JA 2IMQX 3I46A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B5H A;  2V0R A;  4F1R A;  2J63 A;  1DEW A;  2DNJ A;  3NGQ A;  2F2F B;  2O3H A;  3FZI A;  3G6S A;  4B5I A;  3G2C A;  2VOA A;  4B5M A;  3U8U A;  4AWN A;  4FVA A;  1DE8 A;  2JC4 A;  4B5G A;  5CFG A;  4L20 A;  5DFH A;  3MTC A;  4RUW A;  4B5F A;  4QH9 A;  4A9C A;  5J3S A;  5J42 A;  4L21 A;  4F1H A;  5DFF A;  4GEW A;  4F1H B;  1ATN D;  1VYB A;  1DE9 A;  2V0S A;  4B5J A;  3DNI A;  3I5V A;  4F1I A;  4LND A;  3MPR A;  3W2Y A;  3G1K A;  5J3Z A;  3G3C A;  5J8N A;  5EWT A;  1I9Z A;  3I48 A;  5INL A;  4FPV A;  5INN A;  2DDS A;  4C1R A;  5INQ A;  5INO A;  3K55 A;  3G91 A;  3G38 A;  2A3Z B;  3G0R A;  4GZ1 A;  3I41 A;  4GZ0 A;  5INP A;  4K6L F;  3NR8 A;  1SR4 B;  5A7I A;  3W2X A;  2DDT A;  3G0A A;  4JG3 A;  4GYZ A;  5INK A;  3G00 A;  3NGO A;  1YJH A;  2UYR X;  3G3Y A;  2A41 B;  4GZ2 A;  1BIX A;  3G8V A;  5DFI A;  2D1K B;  4CML A;  5HT2 A;  4QHE A;  3L1W A;  2O3C A;  5DG0 A;  4CMN A;  4IEM A;  1HD7 A;  1WDU A;  2JC5 A;  3GA6 A;  4PUQ A;  1NTF A;  5J3P A;  1Y21 A;  5DFJ A;  2F1N A;  3CJC D;  1AKO A;  2EI9 A;  3N9V A;  1E9N A;  2A42 B;  5DV4 A;  2XSW A;  3W3D B;  3WCX A;  3G4T A;  2A40 B;  3TEB A;  4QHD A;  2DDR A;  5CFE A;  5INM A;  1I9Y A;  2ISI A;  5DV2 A;  4L1Y A;  4L1Z A;  3NGN A;  1ZWX A;  3G2D A;  1DNK A;  1SI6 X;  5A7J A;  2IMQ X;  3I46 A; 
#chains in the Genus database with same CATH topology
 4B5H A;  2V0R A;  4F1R A;  2J63 A;  1DEW A;  2DNJ A;  3NGQ A;  2F2F B;  2O3H A;  3FZI A;  3G6S A;  4B5I A;  3G2C A;  2VOA A;  4B5M A;  3U8U A;  4AWN A;  4FVA A;  1DE8 A;  2JC4 A;  4B5G A;  5CFG A;  4L20 A;  5DFH A;  3MTC A;  4RUW A;  4B5F A;  4QH9 A;  4A9C A;  5J3S A;  5J42 A;  4L21 A;  4F1H A;  5DFF A;  4GEW A;  4F1H B;  1ATN D;  1VYB A;  1DE9 A;  2V0S A;  4B5J A;  3DNI A;  3I5V A;  4F1I A;  4LND A;  3MPR A;  3W2Y A;  3G1K A;  5J3Z A;  3G3C A;  5J8N A;  5EWT A;  1I9Z A;  3I48 A;  5INL A;  4FPV A;  5INN A;  2DDS A;  4C1R A;  5INQ A;  5INO A;  3K55 A;  3G91 A;  3G38 A;  2A3Z B;  3G0R A;  4GZ1 A;  3I41 A;  4GZ0 A;  5INP A;  4K6L F;  3NR8 A;  1SR4 B;  5A7I A;  3W2X A;  2DDT A;  3G0A A;  4JG3 A;  4GYZ A;  5INK A;  3G00 A;  3NGO A;  1YJH A;  2UYR X;  3G3Y A;  2A41 B;  4GZ2 A;  1BIX A;  3G8V A;  5DFI A;  2D1K B;  4CML A;  5HT2 A;  4QHE A;  3L1W A;  2O3C A;  5DG0 A;  4CMN A;  4IEM A;  1HD7 A;  1WDU A;  2JC5 A;  3GA6 A;  4PUQ A;  1NTF A;  5J3P A;  1Y21 A;  5DFJ A;  2F1N A;  3CJC D;  1AKO A;  2EI9 A;  3N9V A;  1E9N A;  2A42 B;  5DV4 A;  2XSW A;  3W3D B;  3WCX A;  3G4T A;  2A40 B;  3TEB A;  4QHD A;  2DDR A;  5CFE A;  5INM A;  1I9Y A;  2ISI A;  5DV2 A;  4L1Y A;  4L1Z A;  3NGN A;  1ZWX A;  3G2D A;  1DNK A;  1SI6 X;  5A7J A;  2IMQ X;  3I46 A; 
#chains in the Genus database with same CATH homology
 4B5H A;  2V0R A;  4F1R A;  2J63 A;  1DEW A;  2DNJ A;  3NGQ A;  2F2F B;  2O3H A;  3FZI A;  3G6S A;  4B5I A;  3G2C A;  2VOA A;  4B5M A;  3U8U A;  4AWN A;  4FVA A;  1DE8 A;  2JC4 A;  4B5G A;  5CFG A;  4L20 A;  5DFH A;  3MTC A;  4RUW A;  4B5F A;  4QH9 A;  4A9C A;  5J3S A;  5J42 A;  4L21 A;  4F1H A;  5DFF A;  4GEW A;  4F1H B;  1ATN D;  1VYB A;  1DE9 A;  2V0S A;  4B5J A;  3DNI A;  3I5V A;  4F1I A;  4LND A;  3MPR A;  3W2Y A;  3G1K A;  5J3Z A;  3G3C A;  5J8N A;  5EWT A;  1I9Z A;  3I48 A;  5INL A;  4FPV A;  5INN A;  2DDS A;  4C1R A;  5INQ A;  5INO A;  3K55 A;  3G91 A;  3G38 A;  2A3Z B;  3G0R A;  4GZ1 A;  3I41 A;  4GZ0 A;  5INP A;  4K6L F;  3NR8 A;  1SR4 B;  5A7I A;  3W2X A;  2DDT A;  3G0A A;  4JG3 A;  4GYZ A;  5INK A;  3G00 A;  3NGO A;  1YJH A;  2UYR X;  3G3Y A;  2A41 B;  4GZ2 A;  1BIX A;  3G8V A;  5DFI A;  2D1K B;  4CML A;  5HT2 A;  4QHE A;  3L1W A;  2O3C A;  5DG0 A;  4CMN A;  4IEM A;  1HD7 A;  1WDU A;  2JC5 A;  3GA6 A;  4PUQ A;  1NTF A;  5J3P A;  1Y21 A;  5DFJ A;  2F1N A;  3CJC D;  1AKO A;  2EI9 A;  3N9V A;  1E9N A;  2A42 B;  5DV4 A;  2XSW A;  3W3D B;  3WCX A;  3G4T A;  2A40 B;  3TEB A;  4QHD A;  2DDR A;  5CFE A;  5INM A;  1I9Y A;  2ISI A;  5DV2 A;  4L1Y A;  4L1Z A;  3NGN A;  1ZWX A;  3G2D A;  1DNK A;  1SI6 X;  5A7J A;  2IMQ X;  3I46 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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