2V21A

Crystal structure of the t. thermophilus dodecin in complex with prebound fmn
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
67
structure length
67
Chain Sequence
GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Flavoprotein
molecule keywords HYPOTHETICAL PROTEIN TTHA1431
publication title The Dodecin from Thermus Thermophilus, a Bifunctional Cofactor Storage Protein.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 11
structure length 67
sequence length 67
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07311 Dodecin Dodecin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1660.10 Alpha Beta 2-Layer Sandwich Dodecin subunit-like Flavin-binding protein dodecin 2v21A00
2VX9A 2V21A 2DEHA 2CC6A 2M2JA 2CCBA 4B2MA 1MOGA 4B2KA 2VYXA 2DEGA 2MA8A 2VKFA 2VXAA 2CC7A 2CZ8A 4EVUA 2CJCA 2CCCA 2V19A 4B2JA 2CC8A 2UX9A 2YJ0A 2YIZA 2CIFA 2VKGA 3OQTA 2MA4A 4B2HA 2CC9A 2CIEA 2DEVA 3ONRA 2JNAA 2V18A 2NOCA
chains in the Genus database with same CATH superfamily
2VX9A 2V21A 2DEHA 2CC6A 2M2JA 2JZ7A 2CCBA 1RGXA 4B2MA 1MOGA 4B2KA 2VYXA 2DEGA 2MA8A 2VKFA 2VXAA 2CC7A 2CZ8A 4EVUA 2CJCA 2CCCA 2V19A 4B2JA 1RH7A 2CC8A 2UX9A 2YJ0A 2YIZA 2CIFA 2VKGA 3OQTA 2MA4A 4B2HA 2CC9A 2CIEA 2DEVA 3W1EA 3ONRA 2JNAA 2V18A 2NOCA 1RFXA
chains in the Genus database with same CATH topology
2VX9A 2V21A 2DEHA 2CC6A 2M2JA 2CCBA 4B2MA 1MOGA 4B2KA 2VYXA 2DEGA 2MA8A 2VKFA 2VXAA 2CC7A 2CZ8A 4EVUA 2CJCA 2CCCA 2V19A 4B2JA 2CC8A 2UX9A 2YJ0A 2YIZA 2CIFA 2VKGA 3OQTA 2MA4A 4B2HA 2CC9A 2CIEA 2DEVA 3ONRA 2JNAA 2V18A 2NOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VX9 A;  2V21 A;  2DEH A;  2CC6 A;  2M2J A;  2CCB A;  4B2M A;  1MOG A;  4B2K A;  2VYX A;  2DEG A;  2MA8 A;  2VKF A;  2VXA A;  2CC7 A;  2CZ8 A;  4EVU A;  2CJC A;  2CCC A;  2V19 A;  4B2J A;  2CC8 A;  2UX9 A;  2YJ0 A;  2YIZ A;  2CIF A;  2VKG A;  3OQT A;  2MA4 A;  4B2H A;  2CC9 A;  2CIE A;  2DEV A;  3ONR A;  2JNA A;  2V18 A;  2NOC A; 
#chains in the Genus database with same CATH topology
 2VX9 A;  2V21 A;  2DEH A;  2CC6 A;  2M2J A;  2JZ7 A;  2CCB A;  1RGX A;  4B2M A;  1MOG A;  4B2K A;  2VYX A;  2DEG A;  2MA8 A;  2VKF A;  2VXA A;  2CC7 A;  2CZ8 A;  4EVU A;  2CJC A;  2CCC A;  2V19 A;  4B2J A;  1RH7 A;  2CC8 A;  2UX9 A;  2YJ0 A;  2YIZ A;  2CIF A;  2VKG A;  3OQT A;  2MA4 A;  4B2H A;  2CC9 A;  2CIE A;  2DEV A;  3W1E A;  3ONR A;  2JNA A;  2V18 A;  2NOC A;  1RFX A; 
#chains in the Genus database with same CATH homology
 2VX9 A;  2V21 A;  2DEH A;  2CC6 A;  2M2J A;  2CCB A;  4B2M A;  1MOG A;  4B2K A;  2VYX A;  2DEG A;  2MA8 A;  2VKF A;  2VXA A;  2CC7 A;  2CZ8 A;  4EVU A;  2CJC A;  2CCC A;  2V19 A;  4B2J A;  2CC8 A;  2UX9 A;  2YJ0 A;  2YIZ A;  2CIF A;  2VKG A;  3OQT A;  2MA4 A;  4B2H A;  2CC9 A;  2CIE A;  2DEV A;  3ONR A;  2JNA A;  2V18 A;  2NOC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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