2V3JA

The yeast ribosome synthesis factor emg1 alpha beta knot fold methyltransferase
Total Genus 60
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
Knots found
sequence length
229
structure length
217
Chain Sequence
LVPQAPPVLTSKDKITKRMIVVLAMASLETHKIYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords ESSENTIAL FOR MITOTIC GROWTH 1
publication title The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ribosomal protein
total genus 60
structure length 217
sequence length 229
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1.
pdb deposition date 2007-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2v3jA01
1OY5A 3IC6A 1MXIA 4YQ3A 3ONPA 1X7OA 1NXZA 3N4KA 2O3AA 4L69A 3N4JA 4YPWA 2CX8A 1O6DA 4YQQA 4YQ1A 3DCMX 1K3RA 3AI9X 4YQLA 4YQPA 4H3ZA 4MCDA 2V3JA 4YQ2A 4YQ0A 2EGWA 3E5YA 1X7PA 3BBDA 4YQSA 1NS5A 4FAKA 4YQAA 4YQDA 3GYQA 4YQRA 4YVJA 3OINA 3OIIA 4MCCA 4YPXA 2QWVA 3NK6A 4MCBA 2HA8A 3O7BA 1UAJA 1VH0A 3KTYA 1P9PA 1UAMA 4IG6A 4JALA 4X3LA 1IPAA 3QUVA 5GMBA 3KY7A 4YQOA 4YPYA 4YQTA 1V2XA 1ZJRA 2Z0YA 4PZKA 4J3CA 5CO4A 4YVIA 4YVHA 4YVKA 3L8UA 4YQ8A 4X3MA 1VHKA 4H3YA 2YY8A 4YQJA 4YQBA 3OIJA 4YQ6A 4YQNA 1GZ0A 4KDZA 2V3KA 2QMMA 5GM8A 2EGVA 1TO0A 5GMCA 4E8BA 3IEFA 1Z85A 5FAIA 1VHYA 4YQ7A 4CNDA 3AIAA 3BBEA 3KW2A 3AXZA 1UALA 2I6DA 4XBOA 4YQCA 3KNUA 3BBHA 4KGNA 3NK7A 4YPZA 3ILKA 4YQIA 4RG1A 1UAKA 1J85A 4YVGA 4CNEA 4CNFA 4JAKA 5D9FA 4YQGA 4YQKA 1V6ZA 4CNGA 4YQ5A 4YQ9A 4YQ4A
chains in the Genus database with same CATH superfamily
1OY5A 3IC6A 1MXIA 4YQ3A 3ONPA 1X7OA 1NXZA 3N4KA 2O3AA 4L69A 3N4JA 4YPWA 4JWHA 2CX8A 1O6DA 4YQQA 4YQ1A 3DCMX 1K3RA 3AI9X 4YQLA 4YQPA 4H3ZA 4MCDA 2V3JA 4YQ2A 4YQ0A 2EGWA 3E5YA 1X7PA 3BBDA 4YQSA 1NS5A 4FAKA 4YQAA 4YQDA 3GYQA 4YQRA 4YVJA 4JWGA 3OINA 3OIIA 4MCCA 4YPXA 2QWVA 3NK6A 4MCBA 2HA8A 3O7BA 1UAJA 1VH0A 3KTYA 1P9PA 1UAMA 4IG6A 4JALA 4X3LA 1IPAA 4FMWA 3QUVA 5GMBA 3KY7A 4YQOA 4YPYA 4YQTA 1V2XA 1ZJRA 2Z0YA 4PZKA 4J3CA 5CO4A 4YVIA 4YVHA 4YVKA 3L8UA 4YQ8A 4X3MA 1VHKA 4H3YA 4JWJA 2YY8A 4YQJA 4YQBA 3OIJA 4YQ6A 4YQNA 1GZ0A 4KDZA 2V3KA 2QMMA 5GM8A 2EGVA 1TO0A 5GMCA 4E8BA 3IEFA 1Z85A 5FAIA 1VHYA 4YQ7A 4CNDA 3AIAA 3BBEA 3KW2A 3AXZA 1UALA 2I6DA 4XBOA 4JWFA 4YQCA 3KNUA 3BBHA 4KGNA 3NK7A 4YPZA 3ILKA 4YQIA 4RG1A 1UAKA 1J85A 4YVGA 4CNEA 4CNFA 4JAKA 5D9FA 4YQGA 4YQKA 1V6ZA 4CNGA 4YQ5A 4YQ9A 4YQ4A
chains in the Genus database with same CATH topology
1OY5A 3IC6A 1MXIA 4YQ3A 3ONPA 1X7OA 1NXZA 3N4KA 2O3AA 4L69A 3N4JA 4YPWA 4JWHA 2CX8A 1O6DA 4YQQA 4YQ1A 3DCMX 1K3RA 3AI9X 4YQLA 4YQPA 4H3ZA 4MCDA 2V3JA 4YQ2A 4YQ0A 2EGWA 3E5YA 1X7PA 3BBDA 4YQSA 1NS5A 4FAKA 4YQAA 4YQDA 3GYQA 4YQRA 4YVJA 4JWGA 3OINA 3OIIA 4MCCA 4YPXA 2QWVA 3NK6A 4MCBA 2HA8A 3O7BA 1UAJA 1VH0A 3KTYA 1P9PA 1UAMA 4IG6A 4JALA 4X3LA 1IPAA 4FMWA 3QUVA 5GMBA 3KY7A 4YQOA 4YPYA 4YQTA 1V2XA 1ZJRA 2Z0YA 4PZKA 4J3CA 5CO4A 4YVIA 4YVHA 4YVKA 3L8UA 4YQ8A 4X3MA 1VHKA 4H3YA 4JWJA 2YY8A 4YQJA 4YQBA 3OIJA 4YQ6A 4YQNA 1GZ0A 4KDZA 2V3KA 2QMMA 5GM8A 2EGVA 1TO0A 5GMCA 4E8BA 3IEFA 1Z85A 5FAIA 1VHYA 4YQ7A 4CNDA 3AIAA 3BBEA 3KW2A 3AXZA 1UALA 2I6DA 4XBOA 4JWFA 4YQCA 3KNUA 3BBHA 4KGNA 3NK7A 4YPZA 3ILKA 4YQIA 4RG1A 1UAKA 1J85A 4YVGA 4CNEA 4CNFA 4JAKA 5D9FA 4YQGA 4YQKA 1V6ZA 4CNGA 4YQ5A 4YQ9A 4YQ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OY5 A;  3IC6 A;  1MXI A;  4YQ3 A;  3ONP A;  1X7O A;  1NXZ A;  3N4K A;  2O3A A;  4L69 A;  3N4J A;  4YPW A;  2CX8 A;  1O6D A;  4YQQ A;  4YQ1 A;  3DCM X;  1K3R A;  3AI9 X;  4YQL A;  4YQP A;  4H3Z A;  4MCD A;  2V3J A;  4YQ2 A;  4YQ0 A;  2EGW A;  3E5Y A;  1X7P A;  3BBD A;  4YQS A;  1NS5 A;  4FAK A;  4YQA A;  4YQD A;  3GYQ A;  4YQR A;  4YVJ A;  3OIN A;  3OII A;  4MCC A;  4YPX A;  2QWV A;  3NK6 A;  4MCB A;  2HA8 A;  3O7B A;  1UAJ A;  1VH0 A;  3KTY A;  1P9P A;  1UAM A;  4IG6 A;  4JAL A;  4X3L A;  1IPA A;  3QUV A;  5GMB A;  3KY7 A;  4YQO A;  4YPY A;  4YQT A;  1V2X A;  1ZJR A;  2Z0Y A;  4PZK A;  4J3C A;  5CO4 A;  4YVI A;  4YVH A;  4YVK A;  3L8U A;  4YQ8 A;  4X3M A;  1VHK A;  4H3Y A;  2YY8 A;  4YQJ A;  4YQB A;  3OIJ A;  4YQ6 A;  4YQN A;  1GZ0 A;  4KDZ A;  2V3K A;  2QMM A;  5GM8 A;  2EGV A;  1TO0 A;  5GMC A;  4E8B A;  3IEF A;  1Z85 A;  5FAI A;  1VHY A;  4YQ7 A;  4CND A;  3AIA A;  3BBE A;  3KW2 A;  3AXZ A;  1UAL A;  2I6D A;  4XBO A;  4YQC A;  3KNU A;  3BBH A;  4KGN A;  3NK7 A;  4YPZ A;  3ILK A;  4YQI A;  4RG1 A;  1UAK A;  1J85 A;  4YVG A;  4CNE A;  4CNF A;  4JAK A;  5D9F A;  4YQG A;  4YQK A;  1V6Z A;  4CNG A;  4YQ5 A;  4YQ9 A;  4YQ4 A; 
#chains in the Genus database with same CATH topology
 1OY5 A;  3IC6 A;  1MXI A;  4YQ3 A;  3ONP A;  1X7O A;  1NXZ A;  3N4K A;  2O3A A;  4L69 A;  3N4J A;  4YPW A;  4JWH A;  2CX8 A;  1O6D A;  4YQQ A;  4YQ1 A;  3DCM X;  1K3R A;  3AI9 X;  4YQL A;  4YQP A;  4H3Z A;  4MCD A;  2V3J A;  4YQ2 A;  4YQ0 A;  2EGW A;  3E5Y A;  1X7P A;  3BBD A;  4YQS A;  1NS5 A;  4FAK A;  4YQA A;  4YQD A;  3GYQ A;  4YQR A;  4YVJ A;  4JWG A;  3OIN A;  3OII A;  4MCC A;  4YPX A;  2QWV A;  3NK6 A;  4MCB A;  2HA8 A;  3O7B A;  1UAJ A;  1VH0 A;  3KTY A;  1P9P A;  1UAM A;  4IG6 A;  4JAL A;  4X3L A;  1IPA A;  4FMW A;  3QUV A;  5GMB A;  3KY7 A;  4YQO A;  4YPY A;  4YQT A;  1V2X A;  1ZJR A;  2Z0Y A;  4PZK A;  4J3C A;  5CO4 A;  4YVI A;  4YVH A;  4YVK A;  3L8U A;  4YQ8 A;  4X3M A;  1VHK A;  4H3Y A;  4JWJ A;  2YY8 A;  4YQJ A;  4YQB A;  3OIJ A;  4YQ6 A;  4YQN A;  1GZ0 A;  4KDZ A;  2V3K A;  2QMM A;  5GM8 A;  2EGV A;  1TO0 A;  5GMC A;  4E8B A;  3IEF A;  1Z85 A;  5FAI A;  1VHY A;  4YQ7 A;  4CND A;  3AIA A;  3BBE A;  3KW2 A;  3AXZ A;  1UAL A;  2I6D A;  4XBO A;  4JWF A;  4YQC A;  3KNU A;  3BBH A;  4KGN A;  3NK7 A;  4YPZ A;  3ILK A;  4YQI A;  4RG1 A;  1UAK A;  1J85 A;  4YVG A;  4CNE A;  4CNF A;  4JAK A;  5D9F A;  4YQG A;  4YQK A;  1V6Z A;  4CNG A;  4YQ5 A;  4YQ9 A;  4YQ4 A; 
#chains in the Genus database with same CATH homology
 1OY5 A;  3IC6 A;  1MXI A;  4YQ3 A;  3ONP A;  1X7O A;  1NXZ A;  3N4K A;  2O3A A;  4L69 A;  3N4J A;  4YPW A;  4JWH A;  2CX8 A;  1O6D A;  4YQQ A;  4YQ1 A;  3DCM X;  1K3R A;  3AI9 X;  4YQL A;  4YQP A;  4H3Z A;  4MCD A;  2V3J A;  4YQ2 A;  4YQ0 A;  2EGW A;  3E5Y A;  1X7P A;  3BBD A;  4YQS A;  1NS5 A;  4FAK A;  4YQA A;  4YQD A;  3GYQ A;  4YQR A;  4YVJ A;  4JWG A;  3OIN A;  3OII A;  4MCC A;  4YPX A;  2QWV A;  3NK6 A;  4MCB A;  2HA8 A;  3O7B A;  1UAJ A;  1VH0 A;  3KTY A;  1P9P A;  1UAM A;  4IG6 A;  4JAL A;  4X3L A;  1IPA A;  4FMW A;  3QUV A;  5GMB A;  3KY7 A;  4YQO A;  4YPY A;  4YQT A;  1V2X A;  1ZJR A;  2Z0Y A;  4PZK A;  4J3C A;  5CO4 A;  4YVI A;  4YVH A;  4YVK A;  3L8U A;  4YQ8 A;  4X3M A;  1VHK A;  4H3Y A;  4JWJ A;  2YY8 A;  4YQJ A;  4YQB A;  3OIJ A;  4YQ6 A;  4YQN A;  1GZ0 A;  4KDZ A;  2V3K A;  2QMM A;  5GM8 A;  2EGV A;  1TO0 A;  5GMC A;  4E8B A;  3IEF A;  1Z85 A;  5FAI A;  1VHY A;  4YQ7 A;  4CND A;  3AIA A;  3BBE A;  3KW2 A;  3AXZ A;  1UAL A;  2I6D A;  4XBO A;  4JWF A;  4YQC A;  3KNU A;  3BBH A;  4KGN A;  3NK7 A;  4YPZ A;  3ILK A;  4YQI A;  4RG1 A;  1UAK A;  1J85 A;  4YVG A;  4CNE A;  4CNF A;  4JAK A;  5D9F A;  4YQG A;  4YQK A;  1V6Z A;  4CNG A;  4YQ5 A;  4YQ9 A;  4YQ4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...