2V3JA

The yeast ribosome synthesis factor emg1 alpha beta knot fold methyltransferase
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
Knots found
sequence length
229
structure length
217
Chain Sequence
b'LVPQAPPVLTSKDKITKRMIVVLAMASLETHKIYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ESSENTIAL FOR MITOTIC GROWTH 1
publication title The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ribosomal protein
total genus 60
structure length 217
sequence length 229
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1.
pdb deposition date 2007-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2v3jA01
4RG1A 4CNEA 2YY8A 1UALA 4YQ1A 4YVKA 3OIJA 4YVHA 4JAKA 4YQLA 1O6DA 3O7BA 4YQPA 4YQCA 3KY7A 3QUVA 4MCCA 5D9FA 4YQIA 2Z0YA 4J3CA 1VHYA 1J85A 3BBHA 3NK7A 2QWVA 4CNDA 1MXIA 4YVJA 1V2XA 2V3JA 2HA8A 4YQAA 3N4KA 3KNUA 2I6DA 4PZKA 4YQ5A 5FAIA 4YQ6A 2V3KA 1X7PA 1IPAA 3GYQA 4JALA 2O3AA 4YQTA 1GZ0A 3ONPA 4YQJA 5GMBA 3N4JA 3E5YA 3AXZA 1VHKA 5GM8A 4CNFA 4MCDA 1TO0A 4YPWA 4FAKA 2EGVA 1OY5A 3OINA 4IG6A 4YPYA 3ILKA 4YQ0A 4YQNA 4KDZA 1NS5A 3L8UA 4YQQA 1V6ZA 2EGWA 4H3ZA 1K3RA 1P9PA 3BBDA 3NK6A 4MCBA 4YQBA 4H3YA 4YPXA 4YQ4A 1UAMA 4YQ8A 4YQ7A 4YQ2A 4YQ3A 4E8BA 3DCMX 3AIAA 4L69A 4YQOA 1X7OA 4XBOA 1ZJRA 1UAKA 4YVIA 4CNGA 3IEFA 4YQSA 2CX8A 1UAJA 4YQRA 3IC6A 5GMCA 4YQ9A 3OIIA 4X3LA 3AI9X 4YQDA 1NXZA 4YQKA 3KW2A 2QMMA 4YVGA 3KTYA 4YQGA 4X3MA 5CO4A 3BBEA 4KGNA 1Z85A 1VH0A 4YPZA
chains in the Genus database with same CATH superfamily
4RG1A 4CNEA 2YY8A 1UALA 4YQ1A 4YVKA 3OIJA 4YVHA 4JAKA 4YQLA 1O6DA 3O7BA 4YQPA 4YQCA 3KY7A 3QUVA 4MCCA 5D9FA 4YQIA 2Z0YA 4J3CA 1VHYA 1J85A 3BBHA 3NK7A 2QWVA 4CNDA 1MXIA 4YVJA 1V2XA 2V3JA 2HA8A 4YQAA 3N4KA 3KNUA 2I6DA 4PZKA 4YQ5A 4JWGA 5FAIA 4YQ6A 2V3KA 1X7PA 1IPAA 3GYQA 4JALA 2O3AA 4YQTA 1GZ0A 3ONPA 4YQJA 5GMBA 3N4JA 3E5YA 3AXZA 1VHKA 5GM8A 4CNFA 4MCDA 1TO0A 4YPWA 4FAKA 2EGVA 1OY5A 3OINA 4IG6A 4YPYA 3ILKA 4YQ0A 4YQNA 4KDZA 1NS5A 4JWFA 3L8UA 4YQQA 1V6ZA 2EGWA 4H3ZA 1K3RA 1P9PA 4MCBA 3BBDA 3NK6A 4YQBA 4H3YA 4YPXA 4YQ4A 1UAMA 4YQ8A 4YQ7A 4YQ2A 4YQ3A 4E8BA 3DCMX 3AIAA 4L69A 4YQOA 1X7OA 4XBOA 1ZJRA 1UAKA 4YVIA 4CNGA 3IEFA 4FMWA 4YQSA 2CX8A 1UAJA 4YQRA 3IC6A 5GMCA 4YQ9A 3OIIA 4X3LA 3AI9X 4YQDA 1NXZA 4YQKA 3KW2A 2QMMA 4JWHA 4YVGA 3KTYA 4YQGA 4X3MA 5CO4A 3BBEA 4KGNA 1Z85A 4JWJA 1VH0A 4YPZA
chains in the Genus database with same CATH topology
4RG1A 4CNEA 2YY8A 1UALA 4YQ1A 4YVKA 3OIJA 4YVHA 4JAKA 4YQLA 1O6DA 3O7BA 4YQPA 4YQCA 3KY7A 3QUVA 4MCCA 5D9FA 4YQIA 2Z0YA 4J3CA 1VHYA 1J85A 3BBHA 3NK7A 2QWVA 4CNDA 1MXIA 4YVJA 1V2XA 2V3JA 2HA8A 4YQAA 3N4KA 3KNUA 2I6DA 4PZKA 4YQ5A 4JWGA 5FAIA 4YQ6A 2V3KA 1X7PA 1IPAA 3GYQA 4JALA 2O3AA 4YQTA 1GZ0A 3ONPA 4YQJA 5GMBA 3N4JA 3E5YA 3AXZA 1VHKA 5GM8A 4CNFA 4MCDA 1TO0A 4YPWA 4FAKA 2EGVA 1OY5A 3OINA 4IG6A 4YPYA 3ILKA 4YQ0A 4YQNA 4KDZA 1NS5A 4JWFA 3L8UA 4YQQA 1V6ZA 2EGWA 4H3ZA 1K3RA 1P9PA 4MCBA 3BBDA 3NK6A 4YQBA 4H3YA 4YPXA 4YQ4A 1UAMA 4YQ8A 4YQ7A 4YQ2A 4YQ3A 4E8BA 3DCMX 3AIAA 4L69A 4YQOA 1X7OA 4XBOA 1ZJRA 1UAKA 4YVIA 4CNGA 3IEFA 4FMWA 4YQSA 2CX8A 1UAJA 4YQRA 3IC6A 5GMCA 4YQ9A 3OIIA 4X3LA 3AI9X 4YQDA 1NXZA 4YQKA 3KW2A 2QMMA 4JWHA 4YVGA 3KTYA 4YQGA 4X3MA 5CO4A 3BBEA 4KGNA 1Z85A 4JWJA 1VH0A 4YPZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RG1 A;  4CNE A;  2YY8 A;  1UAL A;  4YQ1 A;  4YVK A;  3OIJ A;  4YVH A;  4JAK A;  4YQL A;  1O6D A;  3O7B A;  4YQP A;  4YQC A;  3KY7 A;  3QUV A;  4MCC A;  5D9F A;  4YQI A;  2Z0Y A;  4J3C A;  1VHY A;  1J85 A;  3BBH A;  3NK7 A;  2QWV A;  4CND A;  1MXI A;  4YVJ A;  1V2X A;  2V3J A;  2HA8 A;  4YQA A;  3N4K A;  3KNU A;  2I6D A;  4PZK A;  4YQ5 A;  5FAI A;  4YQ6 A;  2V3K A;  1X7P A;  1IPA A;  3GYQ A;  4JAL A;  2O3A A;  4YQT A;  1GZ0 A;  3ONP A;  4YQJ A;  5GMB A;  3N4J A;  3E5Y A;  3AXZ A;  1VHK A;  5GM8 A;  4CNF A;  4MCD A;  1TO0 A;  4YPW A;  4FAK A;  2EGV A;  1OY5 A;  3OIN A;  4IG6 A;  4YPY A;  3ILK A;  4YQ0 A;  4YQN A;  4KDZ A;  1NS5 A;  3L8U A;  4YQQ A;  1V6Z A;  2EGW A;  4H3Z A;  1K3R A;  1P9P A;  3BBD A;  3NK6 A;  4MCB A;  4YQB A;  4H3Y A;  4YPX A;  4YQ4 A;  1UAM A;  4YQ8 A;  4YQ7 A;  4YQ2 A;  4YQ3 A;  4E8B A;  3DCM X;  3AIA A;  4L69 A;  4YQO A;  1X7O A;  4XBO A;  1ZJR A;  1UAK A;  4YVI A;  4CNG A;  3IEF A;  4YQS A;  2CX8 A;  1UAJ A;  4YQR A;  3IC6 A;  5GMC A;  4YQ9 A;  3OII A;  4X3L A;  3AI9 X;  4YQD A;  1NXZ A;  4YQK A;  3KW2 A;  2QMM A;  4YVG A;  3KTY A;  4YQG A;  4X3M A;  5CO4 A;  3BBE A;  4KGN A;  1Z85 A;  1VH0 A;  4YPZ A; 
#chains in the Genus database with same CATH topology
 4RG1 A;  4CNE A;  2YY8 A;  1UAL A;  4YQ1 A;  4YVK A;  3OIJ A;  4YVH A;  4JAK A;  4YQL A;  1O6D A;  3O7B A;  4YQP A;  4YQC A;  3KY7 A;  3QUV A;  4MCC A;  5D9F A;  4YQI A;  2Z0Y A;  4J3C A;  1VHY A;  1J85 A;  3BBH A;  3NK7 A;  2QWV A;  4CND A;  1MXI A;  4YVJ A;  1V2X A;  2V3J A;  2HA8 A;  4YQA A;  3N4K A;  3KNU A;  2I6D A;  4PZK A;  4YQ5 A;  4JWG A;  5FAI A;  4YQ6 A;  2V3K A;  1X7P A;  1IPA A;  3GYQ A;  4JAL A;  2O3A A;  4YQT A;  1GZ0 A;  3ONP A;  4YQJ A;  5GMB A;  3N4J A;  3E5Y A;  3AXZ A;  1VHK A;  5GM8 A;  4CNF A;  4MCD A;  1TO0 A;  4YPW A;  4FAK A;  2EGV A;  1OY5 A;  3OIN A;  4IG6 A;  4YPY A;  3ILK A;  4YQ0 A;  4YQN A;  4KDZ A;  1NS5 A;  4JWF A;  3L8U A;  4YQQ A;  1V6Z A;  2EGW A;  4H3Z A;  1K3R A;  1P9P A;  4MCB A;  3BBD A;  3NK6 A;  4YQB A;  4H3Y A;  4YPX A;  4YQ4 A;  1UAM A;  4YQ8 A;  4YQ7 A;  4YQ2 A;  4YQ3 A;  4E8B A;  3DCM X;  3AIA A;  4L69 A;  4YQO A;  1X7O A;  4XBO A;  1ZJR A;  1UAK A;  4YVI A;  4CNG A;  3IEF A;  4FMW A;  4YQS A;  2CX8 A;  1UAJ A;  4YQR A;  3IC6 A;  5GMC A;  4YQ9 A;  3OII A;  4X3L A;  3AI9 X;  4YQD A;  1NXZ A;  4YQK A;  3KW2 A;  2QMM A;  4JWH A;  4YVG A;  3KTY A;  4YQG A;  4X3M A;  5CO4 A;  3BBE A;  4KGN A;  1Z85 A;  4JWJ A;  1VH0 A;  4YPZ A; 
#chains in the Genus database with same CATH homology
 4RG1 A;  4CNE A;  2YY8 A;  1UAL A;  4YQ1 A;  4YVK A;  3OIJ A;  4YVH A;  4JAK A;  4YQL A;  1O6D A;  3O7B A;  4YQP A;  4YQC A;  3KY7 A;  3QUV A;  4MCC A;  5D9F A;  4YQI A;  2Z0Y A;  4J3C A;  1VHY A;  1J85 A;  3BBH A;  3NK7 A;  2QWV A;  4CND A;  1MXI A;  4YVJ A;  1V2X A;  2V3J A;  2HA8 A;  4YQA A;  3N4K A;  3KNU A;  2I6D A;  4PZK A;  4YQ5 A;  4JWG A;  5FAI A;  4YQ6 A;  2V3K A;  1X7P A;  1IPA A;  3GYQ A;  4JAL A;  2O3A A;  4YQT A;  1GZ0 A;  3ONP A;  4YQJ A;  5GMB A;  3N4J A;  3E5Y A;  3AXZ A;  1VHK A;  5GM8 A;  4CNF A;  4MCD A;  1TO0 A;  4YPW A;  4FAK A;  2EGV A;  1OY5 A;  3OIN A;  4IG6 A;  4YPY A;  3ILK A;  4YQ0 A;  4YQN A;  4KDZ A;  1NS5 A;  4JWF A;  3L8U A;  4YQQ A;  1V6Z A;  2EGW A;  4H3Z A;  1K3R A;  1P9P A;  4MCB A;  3BBD A;  3NK6 A;  4YQB A;  4H3Y A;  4YPX A;  4YQ4 A;  1UAM A;  4YQ8 A;  4YQ7 A;  4YQ2 A;  4YQ3 A;  4E8B A;  3DCM X;  3AIA A;  4L69 A;  4YQO A;  1X7O A;  4XBO A;  1ZJR A;  1UAK A;  4YVI A;  4CNG A;  3IEF A;  4FMW A;  4YQS A;  2CX8 A;  1UAJ A;  4YQR A;  3IC6 A;  5GMC A;  4YQ9 A;  3OII A;  4X3L A;  3AI9 X;  4YQD A;  1NXZ A;  4YQK A;  3KW2 A;  2QMM A;  4JWH A;  4YVG A;  3KTY A;  4YQG A;  4X3M A;  5CO4 A;  3BBE A;  4KGN A;  1Z85 A;  4JWJ A;  1VH0 A;  4YPZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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