2V4XA

Crystal structure of jaagsiekte sheep retrovirus capsid n-terminal domain
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
131
structure length
131
Chain Sequence
PVFENNNQRYYESLPFKQLKELKIACSQYGPTAPFTIAMIENLGTQALPPNDWKQTARACLSGGDYLLWKSEFFEQCARIADVNRQQGIQTSYEMLIGEGPYQATDTQLNFLPGAYAQISNAARQAWKRLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords CAPSID PROTEIN P27
publication title Structure of the Capsid Amino-Terminal Domain from the Betaretrovirus, Jaagsiekte Sheep Retrovirus.
pubmed doi rcsb
source organism Jaagsiekte sheep retrovirus
total genus 46
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2008-09-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2v4xA00
1EIAA 5HGKA 2M8NA 2V4XA 5HGLA 1M9XC 1M9CC 2GONA 2JPRA 2XGUA 1L6NA 3H47A 4U0FA 2XDEA 1AK4C 4XROA 1M9FC 2PXRC 4U0BA 2M8PA 2WLVA 4PH0A 1QRJA 2XGVA 4LQWC 1EM9A 4E92A 2WLVB 1M9YC 4U0EA 1G03A 1D1DA 3H4EA 2GOLB 3P05A 4QNBA 4U0AA 1AFVA 4HTWA 4NX4C 1E6JP 3NTEA 4WYMA 4XFXA 1M9EC 3MGEA 1U7KA 2PWOA 4DGEC 5HGMA 4J93A 4PH3A 4DGAC 4E91A 5HGNA 4PH2A 2LF4A 4B4NA 4XFZA 4INBA 2EIAA 3BP9A 5JPAA 2X2DD 4U0CA 4XRQA 4XFYA 2X82A 2M8LA 5HGOA 1M9DC 2XGYA 2PWMA 2X83A 1P7NA 2Y4ZA 2KGFA 4U0DA 1GWPA
chains in the Genus database with same CATH superfamily
1EIAA 5HGKA 2M8NA 2V4XA 5HGLA 1M9XC 1M9CC 2GONA 2JPRA 2XGUA 1L6NA 3H47A 4U0FA 2XDEA 1AK4C 4XROA 1M9FC 2PXRC 4U0BA 2M8PA 2WLVA 4PH0A 1QRJA 2XGVA 4LQWC 1EM9A 4E92A 2WLVB 1M9YC 4U0EA 1G03A 1D1DA 3H4EA 2GOLB 3P05A 4QNBA 4U0AA 1AFVA 4HTWA 4NX4C 1E6JP 3NTEA 4WYMA 4XFXA 1M9EC 3MGEA 1U7KA 2PWOA 4DGEC 5HGMA 4J93A 4PH3A 4DGAC 4E91A 5HGNA 4PH2A 2LF4A 4B4NA 4XFZA 4INBA 2EIAA 3BP9A 5JPAA 2X2DD 4U0CA 4XRQA 4XFYA 2X82A 2M8LA 5HGOA 1M9DC 2XGYA 2PWMA 2X83A 1P7NA 2Y4ZA 2KGFA 4U0DA 1GWPA
chains in the Genus database with same CATH topology
1EIAA 5HGKA 2M8NA 2V4XA 5HGLA 1M9XC 1M9CC 2GONA 2JPRA 2XGUA 1L6NA 3H47A 4U0FA 2XDEA 1AK4C 4XROA 1M9FC 2PXRC 4U0BA 2M8PA 2WLVA 4PH0A 1QRJA 2XGVA 4LQWC 1EM9A 4E92A 2WLVB 1M9YC 4U0EA 1G03A 1D1DA 3H4EA 2GOLB 3P05A 4QNBA 4U0AA 1AFVA 4HTWA 4NX4C 1E6JP 3NTEA 4WYMA 4XFXA 1M9EC 3MGEA 1U7KA 2PWOA 4DGEC 5HGMA 4J93A 4PH3A 4DGAC 4E91A 5HGNA 4PH2A 2LF4A 4B4NA 4XFZA 4INBA 2EIAA 3BP9A 5JPAA 2X2DD 4U0CA 4XRQA 4XFYA 2X82A 2M8LA 5HGOA 1M9DC 2XGYA 2PWMA 2X83A 1P7NA 2Y4ZA 2KGFA 4U0DA 1GWPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EIA A;  5HGK A;  2M8N A;  2V4X A;  5HGL A;  1M9X C;  1M9C C;  2GON A;  2JPR A;  2XGU A;  1L6N A;  3H47 A;  4U0F A;  2XDE A;  1AK4 C;  4XRO A;  1M9F C;  2PXR C;  4U0B A;  2M8P A;  2WLV A;  4PH0 A;  1QRJ A;  2XGV A;  4LQW C;  1EM9 A;  4E92 A;  2WLV B;  1M9Y C;  4U0E A;  1G03 A;  1D1D A;  3H4E A;  2GOL B;  3P05 A;  4QNB A;  4U0A A;  1AFV A;  4HTW A;  4NX4 C;  1E6J P;  3NTE A;  4WYM A;  4XFX A;  1M9E C;  3MGE A;  1U7K A;  2PWO A;  4DGE C;  5HGM A;  4J93 A;  4PH3 A;  4DGA C;  4E91 A;  5HGN A;  4PH2 A;  2LF4 A;  4B4N A;  4XFZ A;  4INB A;  2EIA A;  3BP9 A;  5JPA A;  2X2D D;  4U0C A;  4XRQ A;  4XFY A;  2X82 A;  2M8L A;  5HGO A;  1M9D C;  2XGY A;  2PWM A;  2X83 A;  1P7N A;  2Y4Z A;  2KGF A;  4U0D A;  1GWP A; 
#chains in the Genus database with same CATH topology
 1EIA A;  5HGK A;  2M8N A;  2V4X A;  5HGL A;  1M9X C;  1M9C C;  2GON A;  2JPR A;  2XGU A;  1L6N A;  3H47 A;  4U0F A;  2XDE A;  1AK4 C;  4XRO A;  1M9F C;  2PXR C;  4U0B A;  2M8P A;  2WLV A;  4PH0 A;  1QRJ A;  2XGV A;  4LQW C;  1EM9 A;  4E92 A;  2WLV B;  1M9Y C;  4U0E A;  1G03 A;  1D1D A;  3H4E A;  2GOL B;  3P05 A;  4QNB A;  4U0A A;  1AFV A;  4HTW A;  4NX4 C;  1E6J P;  3NTE A;  4WYM A;  4XFX A;  1M9E C;  3MGE A;  1U7K A;  2PWO A;  4DGE C;  5HGM A;  4J93 A;  4PH3 A;  4DGA C;  4E91 A;  5HGN A;  4PH2 A;  2LF4 A;  4B4N A;  4XFZ A;  4INB A;  2EIA A;  3BP9 A;  5JPA A;  2X2D D;  4U0C A;  4XRQ A;  4XFY A;  2X82 A;  2M8L A;  5HGO A;  1M9D C;  2XGY A;  2PWM A;  2X83 A;  1P7N A;  2Y4Z A;  2KGF A;  4U0D A;  1GWP A; 
#chains in the Genus database with same CATH homology
 1EIA A;  5HGK A;  2M8N A;  2V4X A;  5HGL A;  1M9X C;  1M9C C;  2GON A;  2JPR A;  2XGU A;  1L6N A;  3H47 A;  4U0F A;  2XDE A;  1AK4 C;  4XRO A;  1M9F C;  2PXR C;  4U0B A;  2M8P A;  2WLV A;  4PH0 A;  1QRJ A;  2XGV A;  4LQW C;  1EM9 A;  4E92 A;  2WLV B;  1M9Y C;  4U0E A;  1G03 A;  1D1D A;  3H4E A;  2GOL B;  3P05 A;  4QNB A;  4U0A A;  1AFV A;  4HTW A;  4NX4 C;  1E6J P;  3NTE A;  4WYM A;  4XFX A;  1M9E C;  3MGE A;  1U7K A;  2PWO A;  4DGE C;  5HGM A;  4J93 A;  4PH3 A;  4DGA C;  4E91 A;  5HGN A;  4PH2 A;  2LF4 A;  4B4N A;  4XFZ A;  4INB A;  2EIA A;  3BP9 A;  5JPA A;  2X2D D;  4U0C A;  4XRQ A;  4XFY A;  2X82 A;  2M8L A;  5HGO A;  1M9D C;  2XGY A;  2PWM A;  2X83 A;  1P7N A;  2Y4Z A;  2KGF A;  4U0D A;  1GWP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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