2V5HA

Controlling the storage of nitrogen as arginine: the complex of pii and acetylglutamate kinase from synechococcus elongatus pcc 7942
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
284
structure length
284
Chain Sequence
AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen as Arginine.
pubmed doi rcsb
source organism Synechococcus elongatus
molecule tags Transcription
molecule keywords ACETYLGLUTAMATE KINASE
total genus 91
structure length 284
sequence length 284
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2007-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2v5hA00
3C1NA 3NWYA 3QVHA 2CDQA 2J4LA 4F6TB 4NDPB 3QUOA 3AAWA 3LL9A 1Z9DA 3KZFA 1GSJA 3K52A 2OGXB 3D40A 4AB7A 2JJXA 2V4YA 4OLCA 3S6GA 3ZZGA 2BTYA 2WXBA 3U6UA 1B7BA 4I49A 3AB4A 2J4JA 2RD5A 4NDOB 3LL5A 2BNDA 4NDPA 3TVIA 4USJA 4A7XA 3EK5A 3WWNA 4NDQA 2IJ9A 2V5HA 3QUNA 2BNEA 2J0XA 3L76A 2J0WA 2OGXA 4JZ9A 2HMFA 3ZZHA 4JZ7A 3D2MA 3C1MA 1OHBA 4NDRA 3AB2A 2BMUA 3S6KA 2J5TA 3T7BA 2R98A 3WWMA 4A7WA 2BRIA 3S6HA 2J4KA 2VA1A 1GS5A 4NDQB 4AXSA 4KZTA 1OHAA 2WE4A 2X2WA 3K4YA 2JJ4A 2AP9A 3EK6A 2JI5A 4F6TA 2BRXA 2R8VA 4NDRB 2BUFA 2BNFA 2J5VA 2W21A 3K56A 3QVFA 3ZZFA 4JZ8A 3L86A 2WE5A 3QURA 3LKKA 1E19A 2A1FA 3ZZIA 3D41A 4Q1TA 2AKOA 3C20A 1YBDA 3K4OA 4NDOA 2E9YA 3B8GA 1OH9A 3D2PA
chains in the Genus database with same CATH superfamily
3C1NA 3NWYA 3QVHA 2CDQA 2J4LA 4F6TB 4NDPB 3QUOA 3AAWA 3LL9A 1Z9DA 3KZFA 1GSJA 3K52A 2OGXB 3D40A 4AB7A 2JJXA 2V4YA 4OLCA 3S6GA 3ZZGA 2BTYA 2WXBA 3U6UA 1B7BA 4I49A 3AB4A 2J4JA 2RD5A 4NDOB 3LL5A 2BNDA 4NDPA 3TVIA 4USJA 4A7XA 3EK5A 3WWNA 4NDQA 2IJ9A 2V5HA 3QUNA 2BNEA 2J0XA 3L76A 2J0WA 2OGXA 4JZ9A 2HMFA 3ZZHA 4JZ7A 3D2MA 3C1MA 1OHBA 4NDRA 3AB2A 2BMUA 3S6KA 2J5TA 3T7BA 2R98A 3WWMA 4A7WA 2BRIA 3S6HA 2J4KA 2VA1A 1GS5A 4NDQB 4AXSA 4KZTA 1OHAA 2WE4A 2X2WA 3K4YA 2JJ4A 2AP9A 3EK6A 2JI5A 4F6TA 2BRXA 2R8VA 4NDRB 2BUFA 2BNFA 2J5VA 2W21A 3K56A 3QVFA 3ZZFA 4JZ8A 3L86A 2WE5A 3QURA 3LKKA 1E19A 2A1FA 3ZZIA 3D41A 4Q1TA 2AKOA 3C20A 1YBDA 3K4OA 4NDOA 2E9YA 3B8GA 1OH9A 3D2PA
chains in the Genus database with same CATH topology
3C1NA 3NWYA 3QVHA 2CDQA 2J4LA 4F6TB 4NDPB 3QUOA 3AAWA 3LL9A 1Z9DA 3KZFA 1GSJA 3K52A 2OGXB 3D40A 4AB7A 2JJXA 2V4YA 4OLCA 3S6GA 3ZZGA 2BTYA 2WXBA 3U6UA 1B7BA 4I49A 3AB4A 2J4JA 2RD5A 4NDOB 3LL5A 2BNDA 4NDPA 3TVIA 4USJA 4A7XA 3EK5A 3WWNA 4NDQA 2IJ9A 2V5HA 3QUNA 2BNEA 2J0XA 3L76A 2J0WA 2OGXA 4JZ9A 2HMFA 3ZZHA 4JZ7A 3D2MA 3C1MA 1OHBA 4NDRA 3AB2A 2BMUA 3S6KA 2J5TA 3T7BA 2R98A 3WWMA 4A7WA 2BRIA 3S6HA 2J4KA 2VA1A 1GS5A 4NDQB 4AXSA 4KZTA 1OHAA 2WE4A 2X2WA 3K4YA 2JJ4A 2AP9A 3EK6A 2JI5A 4F6TA 2BRXA 2R8VA 4NDRB 2BUFA 2BNFA 2J5VA 2W21A 3K56A 3QVFA 3ZZFA 4JZ8A 3L86A 2WE5A 3QURA 3LKKA 1E19A 2A1FA 3ZZIA 3D41A 4Q1TA 2AKOA 3C20A 1YBDA 3K4OA 4NDOA 2E9YA 3B8GA 1OH9A 3D2PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C1N A;  3NWY A;  3QVH A;  2CDQ A;  2J4L A;  4F6T B;  4NDP B;  3QUO A;  3AAW A;  3LL9 A;  1Z9D A;  3KZF A;  1GSJ A;  3K52 A;  2OGX B;  3D40 A;  4AB7 A;  2JJX A;  2V4Y A;  4OLC A;  3S6G A;  3ZZG A;  2BTY A;  2WXB A;  3U6U A;  1B7B A;  4I49 A;  3AB4 A;  2J4J A;  2RD5 A;  4NDO B;  3LL5 A;  2BND A;  4NDP A;  3TVI A;  4USJ A;  4A7X A;  3EK5 A;  3WWN A;  4NDQ A;  2IJ9 A;  2V5H A;  3QUN A;  2BNE A;  2J0X A;  3L76 A;  2J0W A;  2OGX A;  4JZ9 A;  2HMF A;  3ZZH A;  4JZ7 A;  3D2M A;  3C1M A;  1OHB A;  4NDR A;  3AB2 A;  2BMU A;  3S6K A;  2J5T A;  3T7B A;  2R98 A;  3WWM A;  4A7W A;  2BRI A;  3S6H A;  2J4K A;  2VA1 A;  1GS5 A;  4NDQ B;  4AXS A;  4KZT A;  1OHA A;  2WE4 A;  2X2W A;  3K4Y A;  2JJ4 A;  2AP9 A;  3EK6 A;  2JI5 A;  4F6T A;  2BRX A;  2R8V A;  4NDR B;  2BUF A;  2BNF A;  2J5V A;  2W21 A;  3K56 A;  3QVF A;  3ZZF A;  4JZ8 A;  3L86 A;  2WE5 A;  3QUR A;  3LKK A;  1E19 A;  2A1F A;  3ZZI A;  3D41 A;  4Q1T A;  2AKO A;  3C20 A;  1YBD A;  3K4O A;  4NDO A;  2E9Y A;  3B8G A;  1OH9 A;  3D2P A; 
#chains in the Genus database with same CATH topology
 3C1N A;  3NWY A;  3QVH A;  2CDQ A;  2J4L A;  4F6T B;  4NDP B;  3QUO A;  3AAW A;  3LL9 A;  1Z9D A;  3KZF A;  1GSJ A;  3K52 A;  2OGX B;  3D40 A;  4AB7 A;  2JJX A;  2V4Y A;  4OLC A;  3S6G A;  3ZZG A;  2BTY A;  2WXB A;  3U6U A;  1B7B A;  4I49 A;  3AB4 A;  2J4J A;  2RD5 A;  4NDO B;  3LL5 A;  2BND A;  4NDP A;  3TVI A;  4USJ A;  4A7X A;  3EK5 A;  3WWN A;  4NDQ A;  2IJ9 A;  2V5H A;  3QUN A;  2BNE A;  2J0X A;  3L76 A;  2J0W A;  2OGX A;  4JZ9 A;  2HMF A;  3ZZH A;  4JZ7 A;  3D2M A;  3C1M A;  1OHB A;  4NDR A;  3AB2 A;  2BMU A;  3S6K A;  2J5T A;  3T7B A;  2R98 A;  3WWM A;  4A7W A;  2BRI A;  3S6H A;  2J4K A;  2VA1 A;  1GS5 A;  4NDQ B;  4AXS A;  4KZT A;  1OHA A;  2WE4 A;  2X2W A;  3K4Y A;  2JJ4 A;  2AP9 A;  3EK6 A;  2JI5 A;  4F6T A;  2BRX A;  2R8V A;  4NDR B;  2BUF A;  2BNF A;  2J5V A;  2W21 A;  3K56 A;  3QVF A;  3ZZF A;  4JZ8 A;  3L86 A;  2WE5 A;  3QUR A;  3LKK A;  1E19 A;  2A1F A;  3ZZI A;  3D41 A;  4Q1T A;  2AKO A;  3C20 A;  1YBD A;  3K4O A;  4NDO A;  2E9Y A;  3B8G A;  1OH9 A;  3D2P A; 
#chains in the Genus database with same CATH homology
 3C1N A;  3NWY A;  3QVH A;  2CDQ A;  2J4L A;  4F6T B;  4NDP B;  3QUO A;  3AAW A;  3LL9 A;  1Z9D A;  3KZF A;  1GSJ A;  3K52 A;  2OGX B;  3D40 A;  4AB7 A;  2JJX A;  2V4Y A;  4OLC A;  3S6G A;  3ZZG A;  2BTY A;  2WXB A;  3U6U A;  1B7B A;  4I49 A;  3AB4 A;  2J4J A;  2RD5 A;  4NDO B;  3LL5 A;  2BND A;  4NDP A;  3TVI A;  4USJ A;  4A7X A;  3EK5 A;  3WWN A;  4NDQ A;  2IJ9 A;  2V5H A;  3QUN A;  2BNE A;  2J0X A;  3L76 A;  2J0W A;  2OGX A;  4JZ9 A;  2HMF A;  3ZZH A;  4JZ7 A;  3D2M A;  3C1M A;  1OHB A;  4NDR A;  3AB2 A;  2BMU A;  3S6K A;  2J5T A;  3T7B A;  2R98 A;  3WWM A;  4A7W A;  2BRI A;  3S6H A;  2J4K A;  2VA1 A;  1GS5 A;  4NDQ B;  4AXS A;  4KZT A;  1OHA A;  2WE4 A;  2X2W A;  3K4Y A;  2JJ4 A;  2AP9 A;  3EK6 A;  2JI5 A;  4F6T A;  2BRX A;  2R8V A;  4NDR B;  2BUF A;  2BNF A;  2J5V A;  2W21 A;  3K56 A;  3QVF A;  3ZZF A;  4JZ8 A;  3L86 A;  2WE5 A;  3QUR A;  3LKK A;  1E19 A;  2A1F A;  3ZZI A;  3D41 A;  4Q1T A;  2AKO A;  3C20 A;  1YBD A;  3K4O A;  4NDO A;  2E9Y A;  3B8G A;  1OH9 A;  3D2P A; 
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