2V5HA

Controlling the storage of nitrogen as arginine: the complex of pii and acetylglutamate kinase from synechococcus elongatus pcc 7942
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
284
structure length
284
Chain Sequence
b'AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ACETYLGLUTAMATE KINASE
publication title The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen as Arginine.
pubmed doi rcsb
source organism Synechococcus elongatus
molecule tags Transcription
total genus 91
structure length 284
sequence length 284
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2007-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2v5hA00
4A7XA 3KZFA 3TVIA 3L86A 2JJ4A 4A7WA 2J0XA 2J4JA 1GSJA 2VA1A 3U6UA 3LL9A 3NWYA 1GS5A 3D40A 3L76A 2RD5A 2OGXA 4JZ7A 2BRIA 3D2PA 2W21A 3C20A 2AKOA 2A1FA 2BMUA 2HMFA 2E9YA 3C1NA 4JZ9A 2V5HA 3ZZHA 3AB2A 4OLCA 1YBDA 2BTYA 2OGXB 3K56A 3ZZGA 3B8GA 3D2MA 3EK5A 2BNEA 3AAWA 4KZTA 3ZZIA 1Z9DA 2R98A 1OHAA 2J4KA 4Q1TA 3S6GA 3K4YA 4NDPB 2BNDA 2V4YA 3AB4A 2BRXA 4F6TB 4NDPA 3T7BA 3S6KA 4USJA 4NDRB 3K4OA 4AXSA 2WE5A 4F6TA 1OHBA 3K52A 4NDOA 4AB7A 3QUNA 4NDRA 4I49A 2X2WA 4NDQA 3S6HA 3C1MA 2JI5A 2CDQA 3QURA 3EK6A 3LKKA 3LL5A 1E19A 3D41A 2JJXA 2IJ9A 2AP9A 3ZZFA 1B7BA 2J5VA 2R8VA 2WXBA 2J4LA 4JZ8A 3WWMA 2BUFA 2WE4A 4NDOB 3QVHA 2J0WA 4NDQB 3QVFA 1OH9A 3WWNA 2J5TA 3QUOA 2BNFA
chains in the Genus database with same CATH superfamily
4A7XA 3KZFA 3TVIA 3L86A 2JJ4A 4A7WA 2J0XA 2J4JA 1GSJA 2VA1A 3U6UA 3LL9A 3NWYA 1GS5A 3D40A 3L76A 2RD5A 2OGXA 4JZ7A 2BRIA 3D2PA 2W21A 3C20A 2AKOA 2A1FA 2BMUA 2HMFA 2E9YA 3C1NA 4JZ9A 2V5HA 3ZZHA 3AB2A 4OLCA 1YBDA 2BTYA 2OGXB 3K56A 3ZZGA 3B8GA 3D2MA 3EK5A 2BNEA 3AAWA 4KZTA 3ZZIA 1Z9DA 2R98A 1OHAA 2J4KA 4Q1TA 3S6GA 3K4YA 4NDPB 2BNDA 2V4YA 3AB4A 2BRXA 4F6TB 4NDPA 3T7BA 3S6KA 4USJA 4NDRB 3K4OA 4AXSA 2WE5A 4F6TA 1OHBA 3K52A 4NDOA 4AB7A 3QUNA 4NDRA 4I49A 2X2WA 4NDQA 3S6HA 3C1MA 2JI5A 2CDQA 3QURA 3EK6A 3LKKA 3LL5A 1E19A 3D41A 2JJXA 2IJ9A 2AP9A 3ZZFA 1B7BA 2J5VA 2R8VA 2WXBA 2J4LA 4JZ8A 3WWMA 2BUFA 2WE4A 4NDOB 3QVHA 2J0WA 4NDQB 3QVFA 1OH9A 3WWNA 2J5TA 3QUOA 2BNFA
chains in the Genus database with same CATH topology
4A7XA 3KZFA 3TVIA 3L86A 2JJ4A 4A7WA 2J0XA 2J4JA 1GSJA 2VA1A 3U6UA 3LL9A 3NWYA 1GS5A 3D40A 3L76A 2RD5A 2OGXA 4JZ7A 2BRIA 3D2PA 2W21A 3C20A 2AKOA 2A1FA 2BMUA 2HMFA 2E9YA 3C1NA 4JZ9A 2V5HA 3ZZHA 3AB2A 4OLCA 1YBDA 2BTYA 2OGXB 3K56A 3ZZGA 3B8GA 3D2MA 3EK5A 2BNEA 3AAWA 4KZTA 3ZZIA 1Z9DA 2R98A 1OHAA 2J4KA 4Q1TA 3S6GA 3K4YA 4NDPB 2BNDA 2V4YA 3AB4A 2BRXA 4F6TB 4NDPA 3T7BA 3S6KA 4USJA 4NDRB 3K4OA 4AXSA 2WE5A 4F6TA 1OHBA 3K52A 4NDOA 4AB7A 3QUNA 4NDRA 4I49A 2X2WA 4NDQA 3S6HA 3C1MA 2JI5A 2CDQA 3QURA 3EK6A 3LKKA 3LL5A 1E19A 3D41A 2JJXA 2IJ9A 2AP9A 3ZZFA 1B7BA 2J5VA 2R8VA 2WXBA 2J4LA 4JZ8A 3WWMA 2BUFA 2WE4A 4NDOB 3QVHA 2J0WA 4NDQB 3QVFA 1OH9A 3WWNA 2J5TA 3QUOA 2BNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A7X A;  3KZF A;  3TVI A;  3L86 A;  2JJ4 A;  4A7W A;  2J0X A;  2J4J A;  1GSJ A;  2VA1 A;  3U6U A;  3LL9 A;  3NWY A;  1GS5 A;  3D40 A;  3L76 A;  2RD5 A;  2OGX A;  4JZ7 A;  2BRI A;  3D2P A;  2W21 A;  3C20 A;  2AKO A;  2A1F A;  2BMU A;  2HMF A;  2E9Y A;  3C1N A;  4JZ9 A;  2V5H A;  3ZZH A;  3AB2 A;  4OLC A;  1YBD A;  2BTY A;  2OGX B;  3K56 A;  3ZZG A;  3B8G A;  3D2M A;  3EK5 A;  2BNE A;  3AAW A;  4KZT A;  3ZZI A;  1Z9D A;  2R98 A;  1OHA A;  2J4K A;  4Q1T A;  3S6G A;  3K4Y A;  4NDP B;  2BND A;  2V4Y A;  3AB4 A;  2BRX A;  4F6T B;  4NDP A;  3T7B A;  3S6K A;  4USJ A;  4NDR B;  3K4O A;  4AXS A;  2WE5 A;  4F6T A;  1OHB A;  3K52 A;  4NDO A;  4AB7 A;  3QUN A;  4NDR A;  4I49 A;  2X2W A;  4NDQ A;  3S6H A;  3C1M A;  2JI5 A;  2CDQ A;  3QUR A;  3EK6 A;  3LKK A;  3LL5 A;  1E19 A;  3D41 A;  2JJX A;  2IJ9 A;  2AP9 A;  3ZZF A;  1B7B A;  2J5V A;  2R8V A;  2WXB A;  2J4L A;  4JZ8 A;  3WWM A;  2BUF A;  2WE4 A;  4NDO B;  3QVH A;  2J0W A;  4NDQ B;  3QVF A;  1OH9 A;  3WWN A;  2J5T A;  3QUO A;  2BNF A; 
#chains in the Genus database with same CATH topology
 4A7X A;  3KZF A;  3TVI A;  3L86 A;  2JJ4 A;  4A7W A;  2J0X A;  2J4J A;  1GSJ A;  2VA1 A;  3U6U A;  3LL9 A;  3NWY A;  1GS5 A;  3D40 A;  3L76 A;  2RD5 A;  2OGX A;  4JZ7 A;  2BRI A;  3D2P A;  2W21 A;  3C20 A;  2AKO A;  2A1F A;  2BMU A;  2HMF A;  2E9Y A;  3C1N A;  4JZ9 A;  2V5H A;  3ZZH A;  3AB2 A;  4OLC A;  1YBD A;  2BTY A;  2OGX B;  3K56 A;  3ZZG A;  3B8G A;  3D2M A;  3EK5 A;  2BNE A;  3AAW A;  4KZT A;  3ZZI A;  1Z9D A;  2R98 A;  1OHA A;  2J4K A;  4Q1T A;  3S6G A;  3K4Y A;  4NDP B;  2BND A;  2V4Y A;  3AB4 A;  2BRX A;  4F6T B;  4NDP A;  3T7B A;  3S6K A;  4USJ A;  4NDR B;  3K4O A;  4AXS A;  2WE5 A;  4F6T A;  1OHB A;  3K52 A;  4NDO A;  4AB7 A;  3QUN A;  4NDR A;  4I49 A;  2X2W A;  4NDQ A;  3S6H A;  3C1M A;  2JI5 A;  2CDQ A;  3QUR A;  3EK6 A;  3LKK A;  3LL5 A;  1E19 A;  3D41 A;  2JJX A;  2IJ9 A;  2AP9 A;  3ZZF A;  1B7B A;  2J5V A;  2R8V A;  2WXB A;  2J4L A;  4JZ8 A;  3WWM A;  2BUF A;  2WE4 A;  4NDO B;  3QVH A;  2J0W A;  4NDQ B;  3QVF A;  1OH9 A;  3WWN A;  2J5T A;  3QUO A;  2BNF A; 
#chains in the Genus database with same CATH homology
 4A7X A;  3KZF A;  3TVI A;  3L86 A;  2JJ4 A;  4A7W A;  2J0X A;  2J4J A;  1GSJ A;  2VA1 A;  3U6U A;  3LL9 A;  3NWY A;  1GS5 A;  3D40 A;  3L76 A;  2RD5 A;  2OGX A;  4JZ7 A;  2BRI A;  3D2P A;  2W21 A;  3C20 A;  2AKO A;  2A1F A;  2BMU A;  2HMF A;  2E9Y A;  3C1N A;  4JZ9 A;  2V5H A;  3ZZH A;  3AB2 A;  4OLC A;  1YBD A;  2BTY A;  2OGX B;  3K56 A;  3ZZG A;  3B8G A;  3D2M A;  3EK5 A;  2BNE A;  3AAW A;  4KZT A;  3ZZI A;  1Z9D A;  2R98 A;  1OHA A;  2J4K A;  4Q1T A;  3S6G A;  3K4Y A;  4NDP B;  2BND A;  2V4Y A;  3AB4 A;  2BRX A;  4F6T B;  4NDP A;  3T7B A;  3S6K A;  4USJ A;  4NDR B;  3K4O A;  4AXS A;  2WE5 A;  4F6T A;  1OHB A;  3K52 A;  4NDO A;  4AB7 A;  3QUN A;  4NDR A;  4I49 A;  2X2W A;  4NDQ A;  3S6H A;  3C1M A;  2JI5 A;  2CDQ A;  3QUR A;  3EK6 A;  3LKK A;  3LL5 A;  1E19 A;  3D41 A;  2JJX A;  2IJ9 A;  2AP9 A;  3ZZF A;  1B7B A;  2J5V A;  2R8V A;  2WXB A;  2J4L A;  4JZ8 A;  3WWM A;  2BUF A;  2WE4 A;  4NDO B;  3QVH A;  2J0W A;  4NDQ B;  3QVF A;  1OH9 A;  3WWN A;  2J5T A;  3QUO A;  2BNF A; 
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similar chains in the Genus database (?% sequence similarity)
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