2V5HA

Controlling the storage of nitrogen as arginine: the complex of pii and acetylglutamate kinase from synechococcus elongatus pcc 7942
Total Genus 91
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
284
structure length
284
Chain Sequence
AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen as Arginine.
pubmed doi rcsb
molecule keywords ACETYLGLUTAMATE KINASE
source organism Synechococcus elongatus
molecule tags Transcription
total genus 91
structure length 284
sequence length 284
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2007-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2v5hA00
3S6KA 2BRIA 4NDPB 2RD5A 2BNDA 3B8GA 2WE4A 3D2MA 4NDQA 3ZZGA 2J4KA 4JZ7A 3KZFA 4USJA 3D2PA 4NDOA 2BRXA 2WE5A 2J4LA 2JJ4A 2X2WA 3WWNA 1GS5A 4NDRB 4AB7A 3L76A 2J4JA 2OGXA 3K56A 3LL9A 3AB4A 1B7BA 3TVIA 1OH9A 2AKOA 3EK6A 3QUNA 3D41A 3K4YA 4NDPA 3QUOA 2CDQA 3QURA 3NWYA 4AXSA 4Q1TA 2BNFA 2VA1A 3D40A 4KZTA 2J0WA 4F6TB 2AP9A 3U6UA 1E19A 4A7WA 4NDRA 3ZZHA 3C20A 2J0XA 1OHAA 1GSJA 2A1FA 3LL5A 2HMFA 3C1MA 2J5TA 3C1NA 2JI5A 2BTYA 3S6GA 1YBDA 2J5VA 4NDQB 3ZZFA 2E9YA 4JZ9A 3T7BA 3QVHA 3WWMA 4NDOB 4I49A 3AAWA 2BNEA 2IJ9A 3AB2A 2W21A 1Z9DA 2OGXB 2JJXA 2V4YA 3LKKA 3EK5A 4OLCA 2BUFA 1OHBA 3ZZIA 3K52A 3QVFA 2R8VA 4F6TA 2R98A 4A7XA 2V5HA 2BMUA 4JZ8A 3S6HA 3K4OA 3L86A 2WXBA
chains in the Genus database with same CATH superfamily
3S6KA 2BRIA 4NDPB 2RD5A 2BNDA 3B8GA 2WE4A 3D2MA 4NDQA 3ZZGA 2J4KA 4JZ7A 3KZFA 4USJA 3D2PA 4NDOA 2BRXA 2WE5A 2J4LA 2JJ4A 2X2WA 3WWNA 1GS5A 4NDRB 4AB7A 3L76A 2J4JA 2OGXA 3K56A 3LL9A 3AB4A 1B7BA 3TVIA 1OH9A 2AKOA 3EK6A 3QUNA 3D41A 3K4YA 4NDPA 3QUOA 2CDQA 3QURA 3NWYA 4AXSA 4Q1TA 2BNFA 2VA1A 3D40A 4KZTA 2J0WA 4F6TB 2AP9A 3U6UA 1E19A 4A7WA 4NDRA 3ZZHA 3C20A 2J0XA 1OHAA 1GSJA 2A1FA 3LL5A 2HMFA 3C1MA 2J5TA 3C1NA 2JI5A 2BTYA 3S6GA 1YBDA 2J5VA 4NDQB 3ZZFA 2E9YA 4JZ9A 3T7BA 3QVHA 3WWMA 4NDOB 4I49A 3AAWA 2BNEA 2IJ9A 3AB2A 2W21A 1Z9DA 2OGXB 2JJXA 2V4YA 3LKKA 3EK5A 4OLCA 2BUFA 1OHBA 3ZZIA 3K52A 3QVFA 2R8VA 4F6TA 2R98A 4A7XA 2V5HA 2BMUA 4JZ8A 3S6HA 3K4OA 3L86A 2WXBA
chains in the Genus database with same CATH topology
3S6KA 2BRIA 4NDPB 2RD5A 2BNDA 3B8GA 2WE4A 3D2MA 4NDQA 3ZZGA 2J4KA 4JZ7A 3KZFA 4USJA 3D2PA 4NDOA 2BRXA 2WE5A 2J4LA 2JJ4A 2X2WA 3WWNA 1GS5A 4NDRB 4AB7A 3L76A 2J4JA 2OGXA 3K56A 3LL9A 3AB4A 1B7BA 3TVIA 1OH9A 2AKOA 3EK6A 3QUNA 3D41A 3K4YA 4NDPA 3QUOA 2CDQA 3QURA 3NWYA 4AXSA 4Q1TA 2BNFA 2VA1A 3D40A 4KZTA 2J0WA 4F6TB 2AP9A 3U6UA 1E19A 4A7WA 4NDRA 3ZZHA 3C20A 2J0XA 1OHAA 1GSJA 2A1FA 3LL5A 2HMFA 3C1MA 2J5TA 3C1NA 2JI5A 2BTYA 3S6GA 1YBDA 2J5VA 4NDQB 3ZZFA 2E9YA 4JZ9A 3T7BA 3QVHA 3WWMA 4NDOB 4I49A 3AAWA 2BNEA 2IJ9A 3AB2A 2W21A 1Z9DA 2OGXB 2JJXA 2V4YA 3LKKA 3EK5A 4OLCA 2BUFA 1OHBA 3ZZIA 3K52A 3QVFA 2R8VA 4F6TA 2R98A 4A7XA 2V5HA 2BMUA 4JZ8A 3S6HA 3K4OA 3L86A 2WXBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S6K A;  2BRI A;  4NDP B;  2RD5 A;  2BND A;  3B8G A;  2WE4 A;  3D2M A;  4NDQ A;  3ZZG A;  2J4K A;  4JZ7 A;  3KZF A;  4USJ A;  3D2P A;  4NDO A;  2BRX A;  2WE5 A;  2J4L A;  2JJ4 A;  2X2W A;  3WWN A;  1GS5 A;  4NDR B;  4AB7 A;  3L76 A;  2J4J A;  2OGX A;  3K56 A;  3LL9 A;  3AB4 A;  1B7B A;  3TVI A;  1OH9 A;  2AKO A;  3EK6 A;  3QUN A;  3D41 A;  3K4Y A;  4NDP A;  3QUO A;  2CDQ A;  3QUR A;  3NWY A;  4AXS A;  4Q1T A;  2BNF A;  2VA1 A;  3D40 A;  4KZT A;  2J0W A;  4F6T B;  2AP9 A;  3U6U A;  1E19 A;  4A7W A;  4NDR A;  3ZZH A;  3C20 A;  2J0X A;  1OHA A;  1GSJ A;  2A1F A;  3LL5 A;  2HMF A;  3C1M A;  2J5T A;  3C1N A;  2JI5 A;  2BTY A;  3S6G A;  1YBD A;  2J5V A;  4NDQ B;  3ZZF A;  2E9Y A;  4JZ9 A;  3T7B A;  3QVH A;  3WWM A;  4NDO B;  4I49 A;  3AAW A;  2BNE A;  2IJ9 A;  3AB2 A;  2W21 A;  1Z9D A;  2OGX B;  2JJX A;  2V4Y A;  3LKK A;  3EK5 A;  4OLC A;  2BUF A;  1OHB A;  3ZZI A;  3K52 A;  3QVF A;  2R8V A;  4F6T A;  2R98 A;  4A7X A;  2V5H A;  2BMU A;  4JZ8 A;  3S6H A;  3K4O A;  3L86 A;  2WXB A; 
#chains in the Genus database with same CATH topology
 3S6K A;  2BRI A;  4NDP B;  2RD5 A;  2BND A;  3B8G A;  2WE4 A;  3D2M A;  4NDQ A;  3ZZG A;  2J4K A;  4JZ7 A;  3KZF A;  4USJ A;  3D2P A;  4NDO A;  2BRX A;  2WE5 A;  2J4L A;  2JJ4 A;  2X2W A;  3WWN A;  1GS5 A;  4NDR B;  4AB7 A;  3L76 A;  2J4J A;  2OGX A;  3K56 A;  3LL9 A;  3AB4 A;  1B7B A;  3TVI A;  1OH9 A;  2AKO A;  3EK6 A;  3QUN A;  3D41 A;  3K4Y A;  4NDP A;  3QUO A;  2CDQ A;  3QUR A;  3NWY A;  4AXS A;  4Q1T A;  2BNF A;  2VA1 A;  3D40 A;  4KZT A;  2J0W A;  4F6T B;  2AP9 A;  3U6U A;  1E19 A;  4A7W A;  4NDR A;  3ZZH A;  3C20 A;  2J0X A;  1OHA A;  1GSJ A;  2A1F A;  3LL5 A;  2HMF A;  3C1M A;  2J5T A;  3C1N A;  2JI5 A;  2BTY A;  3S6G A;  1YBD A;  2J5V A;  4NDQ B;  3ZZF A;  2E9Y A;  4JZ9 A;  3T7B A;  3QVH A;  3WWM A;  4NDO B;  4I49 A;  3AAW A;  2BNE A;  2IJ9 A;  3AB2 A;  2W21 A;  1Z9D A;  2OGX B;  2JJX A;  2V4Y A;  3LKK A;  3EK5 A;  4OLC A;  2BUF A;  1OHB A;  3ZZI A;  3K52 A;  3QVF A;  2R8V A;  4F6T A;  2R98 A;  4A7X A;  2V5H A;  2BMU A;  4JZ8 A;  3S6H A;  3K4O A;  3L86 A;  2WXB A; 
#chains in the Genus database with same CATH homology
 3S6K A;  2BRI A;  4NDP B;  2RD5 A;  2BND A;  3B8G A;  2WE4 A;  3D2M A;  4NDQ A;  3ZZG A;  2J4K A;  4JZ7 A;  3KZF A;  4USJ A;  3D2P A;  4NDO A;  2BRX A;  2WE5 A;  2J4L A;  2JJ4 A;  2X2W A;  3WWN A;  1GS5 A;  4NDR B;  4AB7 A;  3L76 A;  2J4J A;  2OGX A;  3K56 A;  3LL9 A;  3AB4 A;  1B7B A;  3TVI A;  1OH9 A;  2AKO A;  3EK6 A;  3QUN A;  3D41 A;  3K4Y A;  4NDP A;  3QUO A;  2CDQ A;  3QUR A;  3NWY A;  4AXS A;  4Q1T A;  2BNF A;  2VA1 A;  3D40 A;  4KZT A;  2J0W A;  4F6T B;  2AP9 A;  3U6U A;  1E19 A;  4A7W A;  4NDR A;  3ZZH A;  3C20 A;  2J0X A;  1OHA A;  1GSJ A;  2A1F A;  3LL5 A;  2HMF A;  3C1M A;  2J5T A;  3C1N A;  2JI5 A;  2BTY A;  3S6G A;  1YBD A;  2J5V A;  4NDQ B;  3ZZF A;  2E9Y A;  4JZ9 A;  3T7B A;  3QVH A;  3WWM A;  4NDO B;  4I49 A;  3AAW A;  2BNE A;  2IJ9 A;  3AB2 A;  2W21 A;  1Z9D A;  2OGX B;  2JJX A;  2V4Y A;  3LKK A;  3EK5 A;  4OLC A;  2BUF A;  1OHB A;  3ZZI A;  3K52 A;  3QVF A;  2R8V A;  4F6T A;  2R98 A;  4A7X A;  2V5H A;  2BMU A;  4JZ8 A;  3S6H A;  3K4O A;  3L86 A;  2WXB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...