2V5HA

Controlling the storage of nitrogen as arginine: the complex of pii and acetylglutamate kinase from synechococcus elongatus pcc 7942
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
284
structure length
284
Chain Sequence
AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen as Arginine.
pubmed doi rcsb
source organism Synechococcus elongatus
molecule tags Transcription
molecule keywords ACETYLGLUTAMATE KINASE
total genus 91
structure length 284
sequence length 284
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2007-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2v5hA00
3AAWA 3EK5A 3C20A 3B8GA 2J4JA 2BTYA 2OGXB 3S6GA 4NDQB 3D2PA 4NDPB 3WWMA 2JJ4A 3K52A 2WE4A 4JZ7A 1OHBA 2CDQA 2E9YA 4A7XA 2W21A 1E19A 2V5HA 3D41A 2WXBA 2J5VA 2J0XA 3TVIA 3QVHA 3LL9A 4A7WA 3QURA 3EK6A 2A1FA 4JZ9A 2VA1A 2HMFA 2X2WA 2BRIA 2JI5A 2IJ9A 3AB2A 4AXSA 3WWNA 2J5TA 2R8VA 2BUFA 4F6TA 1GS5A 3L76A 2AP9A 3NWYA 4Q1TA 2BMUA 2J0WA 3ZZIA 4AB7A 3KZFA 3ZZGA 1OH9A 4OLCA 3ZZHA 3K4YA 2JJXA 4JZ8A 2BNEA 3AB4A 2J4LA 2BNDA 4NDRB 2BNFA 4KZTA 1YBDA 1Z9DA 2WE5A 2J4KA 4NDOA 4NDOB 3T7BA 3QVFA 3QUOA 3K56A 3S6KA 4NDPA 3S6HA 2OGXA 1GSJA 3D40A 1B7BA 3C1NA 3LL5A 3ZZFA 2BRXA 1OHAA 4F6TB 2AKOA 4NDQA 3U6UA 2V4YA 3L86A 4NDRA 2RD5A 3QUNA 4USJA 4I49A 3D2MA 3C1MA 3LKKA 3K4OA 2R98A
chains in the Genus database with same CATH superfamily
3AAWA 3EK5A 3C20A 3B8GA 2J4JA 2BTYA 2OGXB 3S6GA 4NDQB 3D2PA 4NDPB 3WWMA 2JJ4A 3K52A 2WE4A 4JZ7A 1OHBA 2CDQA 2E9YA 4A7XA 2W21A 1E19A 2V5HA 3D41A 2WXBA 2J5VA 2J0XA 3TVIA 3QVHA 3LL9A 4A7WA 3QURA 3EK6A 2A1FA 4JZ9A 2VA1A 2HMFA 2X2WA 2BRIA 2JI5A 2IJ9A 3AB2A 4AXSA 3WWNA 2J5TA 2R8VA 2BUFA 4F6TA 1GS5A 3L76A 2AP9A 3NWYA 4Q1TA 2BMUA 2J0WA 3ZZIA 4AB7A 3KZFA 3ZZGA 1OH9A 4OLCA 3ZZHA 3K4YA 2JJXA 4JZ8A 2BNEA 3AB4A 2J4LA 2BNDA 4NDRB 2BNFA 4KZTA 1YBDA 1Z9DA 2WE5A 2J4KA 4NDOA 4NDOB 3T7BA 3QVFA 3QUOA 3K56A 3S6KA 4NDPA 3S6HA 2OGXA 1GSJA 3D40A 1B7BA 3C1NA 3LL5A 3ZZFA 2BRXA 1OHAA 4F6TB 2AKOA 4NDQA 3U6UA 2V4YA 3L86A 4NDRA 2RD5A 3QUNA 4USJA 4I49A 3D2MA 3C1MA 3LKKA 3K4OA 2R98A
chains in the Genus database with same CATH topology
3AAWA 3EK5A 3C20A 3B8GA 2J4JA 2BTYA 2OGXB 3S6GA 4NDQB 3D2PA 4NDPB 3WWMA 2JJ4A 3K52A 2WE4A 4JZ7A 1OHBA 2CDQA 2E9YA 4A7XA 2W21A 1E19A 2V5HA 3D41A 2WXBA 2J5VA 2J0XA 3TVIA 3QVHA 3LL9A 4A7WA 3QURA 3EK6A 2A1FA 4JZ9A 2VA1A 2HMFA 2X2WA 2BRIA 2JI5A 2IJ9A 3AB2A 4AXSA 3WWNA 2J5TA 2R8VA 2BUFA 4F6TA 1GS5A 3L76A 2AP9A 3NWYA 4Q1TA 2BMUA 2J0WA 3ZZIA 4AB7A 3KZFA 3ZZGA 1OH9A 4OLCA 3ZZHA 3K4YA 2JJXA 4JZ8A 2BNEA 3AB4A 2J4LA 2BNDA 4NDRB 2BNFA 4KZTA 1YBDA 1Z9DA 2WE5A 2J4KA 4NDOA 4NDOB 3T7BA 3QVFA 3QUOA 3K56A 3S6KA 4NDPA 3S6HA 2OGXA 1GSJA 3D40A 1B7BA 3C1NA 3LL5A 3ZZFA 2BRXA 1OHAA 4F6TB 2AKOA 4NDQA 3U6UA 2V4YA 3L86A 4NDRA 2RD5A 3QUNA 4USJA 4I49A 3D2MA 3C1MA 3LKKA 3K4OA 2R98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAW A;  3EK5 A;  3C20 A;  3B8G A;  2J4J A;  2BTY A;  2OGX B;  3S6G A;  4NDQ B;  3D2P A;  4NDP B;  3WWM A;  2JJ4 A;  3K52 A;  2WE4 A;  4JZ7 A;  1OHB A;  2CDQ A;  2E9Y A;  4A7X A;  2W21 A;  1E19 A;  2V5H A;  3D41 A;  2WXB A;  2J5V A;  2J0X A;  3TVI A;  3QVH A;  3LL9 A;  4A7W A;  3QUR A;  3EK6 A;  2A1F A;  4JZ9 A;  2VA1 A;  2HMF A;  2X2W A;  2BRI A;  2JI5 A;  2IJ9 A;  3AB2 A;  4AXS A;  3WWN A;  2J5T A;  2R8V A;  2BUF A;  4F6T A;  1GS5 A;  3L76 A;  2AP9 A;  3NWY A;  4Q1T A;  2BMU A;  2J0W A;  3ZZI A;  4AB7 A;  3KZF A;  3ZZG A;  1OH9 A;  4OLC A;  3ZZH A;  3K4Y A;  2JJX A;  4JZ8 A;  2BNE A;  3AB4 A;  2J4L A;  2BND A;  4NDR B;  2BNF A;  4KZT A;  1YBD A;  1Z9D A;  2WE5 A;  2J4K A;  4NDO A;  4NDO B;  3T7B A;  3QVF A;  3QUO A;  3K56 A;  3S6K A;  4NDP A;  3S6H A;  2OGX A;  1GSJ A;  3D40 A;  1B7B A;  3C1N A;  3LL5 A;  3ZZF A;  2BRX A;  1OHA A;  4F6T B;  2AKO A;  4NDQ A;  3U6U A;  2V4Y A;  3L86 A;  4NDR A;  2RD5 A;  3QUN A;  4USJ A;  4I49 A;  3D2M A;  3C1M A;  3LKK A;  3K4O A;  2R98 A; 
#chains in the Genus database with same CATH topology
 3AAW A;  3EK5 A;  3C20 A;  3B8G A;  2J4J A;  2BTY A;  2OGX B;  3S6G A;  4NDQ B;  3D2P A;  4NDP B;  3WWM A;  2JJ4 A;  3K52 A;  2WE4 A;  4JZ7 A;  1OHB A;  2CDQ A;  2E9Y A;  4A7X A;  2W21 A;  1E19 A;  2V5H A;  3D41 A;  2WXB A;  2J5V A;  2J0X A;  3TVI A;  3QVH A;  3LL9 A;  4A7W A;  3QUR A;  3EK6 A;  2A1F A;  4JZ9 A;  2VA1 A;  2HMF A;  2X2W A;  2BRI A;  2JI5 A;  2IJ9 A;  3AB2 A;  4AXS A;  3WWN A;  2J5T A;  2R8V A;  2BUF A;  4F6T A;  1GS5 A;  3L76 A;  2AP9 A;  3NWY A;  4Q1T A;  2BMU A;  2J0W A;  3ZZI A;  4AB7 A;  3KZF A;  3ZZG A;  1OH9 A;  4OLC A;  3ZZH A;  3K4Y A;  2JJX A;  4JZ8 A;  2BNE A;  3AB4 A;  2J4L A;  2BND A;  4NDR B;  2BNF A;  4KZT A;  1YBD A;  1Z9D A;  2WE5 A;  2J4K A;  4NDO A;  4NDO B;  3T7B A;  3QVF A;  3QUO A;  3K56 A;  3S6K A;  4NDP A;  3S6H A;  2OGX A;  1GSJ A;  3D40 A;  1B7B A;  3C1N A;  3LL5 A;  3ZZF A;  2BRX A;  1OHA A;  4F6T B;  2AKO A;  4NDQ A;  3U6U A;  2V4Y A;  3L86 A;  4NDR A;  2RD5 A;  3QUN A;  4USJ A;  4I49 A;  3D2M A;  3C1M A;  3LKK A;  3K4O A;  2R98 A; 
#chains in the Genus database with same CATH homology
 3AAW A;  3EK5 A;  3C20 A;  3B8G A;  2J4J A;  2BTY A;  2OGX B;  3S6G A;  4NDQ B;  3D2P A;  4NDP B;  3WWM A;  2JJ4 A;  3K52 A;  2WE4 A;  4JZ7 A;  1OHB A;  2CDQ A;  2E9Y A;  4A7X A;  2W21 A;  1E19 A;  2V5H A;  3D41 A;  2WXB A;  2J5V A;  2J0X A;  3TVI A;  3QVH A;  3LL9 A;  4A7W A;  3QUR A;  3EK6 A;  2A1F A;  4JZ9 A;  2VA1 A;  2HMF A;  2X2W A;  2BRI A;  2JI5 A;  2IJ9 A;  3AB2 A;  4AXS A;  3WWN A;  2J5T A;  2R8V A;  2BUF A;  4F6T A;  1GS5 A;  3L76 A;  2AP9 A;  3NWY A;  4Q1T A;  2BMU A;  2J0W A;  3ZZI A;  4AB7 A;  3KZF A;  3ZZG A;  1OH9 A;  4OLC A;  3ZZH A;  3K4Y A;  2JJX A;  4JZ8 A;  2BNE A;  3AB4 A;  2J4L A;  2BND A;  4NDR B;  2BNF A;  4KZT A;  1YBD A;  1Z9D A;  2WE5 A;  2J4K A;  4NDO A;  4NDO B;  3T7B A;  3QVF A;  3QUO A;  3K56 A;  3S6K A;  4NDP A;  3S6H A;  2OGX A;  1GSJ A;  3D40 A;  1B7B A;  3C1N A;  3LL5 A;  3ZZF A;  2BRX A;  1OHA A;  4F6T B;  2AKO A;  4NDQ A;  3U6U A;  2V4Y A;  3L86 A;  4NDR A;  2RD5 A;  3QUN A;  4USJ A;  4I49 A;  3D2M A;  3C1M A;  3LKK A;  3K4O A;  2R98 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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