2V5HA

Controlling the storage of nitrogen as arginine: the complex of pii and acetylglutamate kinase from synechococcus elongatus pcc 7942
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
284
structure length
284
Chain Sequence
AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ACETYLGLUTAMATE KINASE
publication title The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen as Arginine.
pubmed doi rcsb
source organism Synechococcus elongatus
molecule tags Transcription
total genus 91
structure length 284
sequence length 284
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.2.8: Acetylglutamate kinase.
pdb deposition date 2007-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2v5hA00
1OHBA 3QVHA 2IJ9A 2J5VA 2VA1A 3WWNA 2J4KA 3D2MA 3EK6A 1OHAA 2JJXA 4USJA 3S6GA 4A7WA 2V4YA 4OLCA 3ZZGA 1B7BA 3AB4A 2RD5A 1GS5A 1E19A 2WE5A 3AB2A 4NDQA 3D40A 2OGXA 3QUOA 3ZZIA 1Z9DA 2E9YA 2BRXA 3QURA 3TVIA 3ZZFA 3S6HA 3C20A 1OH9A 2JJ4A 4AXSA 2BMUA 2J0XA 2WE4A 2V5HA 2OGXB 2A1FA 3LL5A 3K52A 3T7BA 4NDRA 4F6TA 4NDOA 3L76A 3QVFA 2BNEA 2WXBA 4I49A 3K4YA 2J4JA 3U6UA 3EK5A 2R98A 4KZTA 3C1NA 2W21A 2J5TA 2AKOA 3KZFA 4F6TB 3WWMA 3K56A 4NDQB 4NDOB 4NDPA 2J0WA 3L86A 3D41A 3K4OA 3NWYA 3D2PA 2R8VA 3ZZHA 2BNDA 2AP9A 2JI5A 4JZ9A 2HMFA 2BNFA 4JZ7A 2X2WA 1YBDA 3C1MA 3LKKA 3LL9A 2BRIA 3AAWA 4Q1TA 3S6KA 4NDPB 2BUFA 4AB7A 1GSJA 4A7XA 4NDRB 4JZ8A 3QUNA 3B8GA 2J4LA 2CDQA 2BTYA
chains in the Genus database with same CATH superfamily
1OHBA 3QVHA 2IJ9A 2J5VA 2VA1A 3WWNA 2J4KA 3D2MA 3EK6A 1OHAA 2JJXA 4USJA 3S6GA 4A7WA 2V4YA 4OLCA 3ZZGA 1B7BA 3AB4A 2RD5A 1GS5A 1E19A 2WE5A 3AB2A 4NDQA 3D40A 2OGXA 3QUOA 3ZZIA 1Z9DA 2E9YA 2BRXA 3QURA 3TVIA 3ZZFA 3S6HA 3C20A 1OH9A 2JJ4A 4AXSA 2BMUA 2J0XA 2WE4A 2V5HA 2OGXB 2A1FA 3LL5A 3K52A 3T7BA 4NDRA 4F6TA 4NDOA 3L76A 3QVFA 2BNEA 2WXBA 4I49A 3K4YA 2J4JA 3U6UA 3EK5A 2R98A 4KZTA 3C1NA 2W21A 2J5TA 2AKOA 3KZFA 4F6TB 3WWMA 3K56A 4NDQB 4NDOB 4NDPA 2J0WA 3L86A 3D41A 3K4OA 3NWYA 3D2PA 2R8VA 3ZZHA 2BNDA 2AP9A 2JI5A 4JZ9A 2HMFA 2BNFA 4JZ7A 2X2WA 1YBDA 3C1MA 3LKKA 3LL9A 2BRIA 3AAWA 4Q1TA 3S6KA 4NDPB 2BUFA 4AB7A 1GSJA 4A7XA 4NDRB 4JZ8A 3QUNA 3B8GA 2J4LA 2CDQA 2BTYA
chains in the Genus database with same CATH topology
1OHBA 3QVHA 2IJ9A 2J5VA 2VA1A 3WWNA 2J4KA 3D2MA 3EK6A 1OHAA 2JJXA 4USJA 3S6GA 4A7WA 2V4YA 4OLCA 3ZZGA 1B7BA 3AB4A 2RD5A 1GS5A 1E19A 2WE5A 3AB2A 4NDQA 3D40A 2OGXA 3QUOA 3ZZIA 1Z9DA 2E9YA 2BRXA 3QURA 3TVIA 3ZZFA 3S6HA 3C20A 1OH9A 2JJ4A 4AXSA 2BMUA 2J0XA 2WE4A 2V5HA 2OGXB 2A1FA 3LL5A 3K52A 3T7BA 4NDRA 4F6TA 4NDOA 3L76A 3QVFA 2BNEA 2WXBA 4I49A 3K4YA 2J4JA 3U6UA 3EK5A 2R98A 4KZTA 3C1NA 2W21A 2J5TA 2AKOA 3KZFA 4F6TB 3WWMA 3K56A 4NDQB 4NDOB 4NDPA 2J0WA 3L86A 3D41A 3K4OA 3NWYA 3D2PA 2R8VA 3ZZHA 2BNDA 2AP9A 2JI5A 4JZ9A 2HMFA 2BNFA 4JZ7A 2X2WA 1YBDA 3C1MA 3LKKA 3LL9A 2BRIA 3AAWA 4Q1TA 3S6KA 4NDPB 2BUFA 4AB7A 1GSJA 4A7XA 4NDRB 4JZ8A 3QUNA 3B8GA 2J4LA 2CDQA 2BTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OHB A;  3QVH A;  2IJ9 A;  2J5V A;  2VA1 A;  3WWN A;  2J4K A;  3D2M A;  3EK6 A;  1OHA A;  2JJX A;  4USJ A;  3S6G A;  4A7W A;  2V4Y A;  4OLC A;  3ZZG A;  1B7B A;  3AB4 A;  2RD5 A;  1GS5 A;  1E19 A;  2WE5 A;  3AB2 A;  4NDQ A;  3D40 A;  2OGX A;  3QUO A;  3ZZI A;  1Z9D A;  2E9Y A;  2BRX A;  3QUR A;  3TVI A;  3ZZF A;  3S6H A;  3C20 A;  1OH9 A;  2JJ4 A;  4AXS A;  2BMU A;  2J0X A;  2WE4 A;  2V5H A;  2OGX B;  2A1F A;  3LL5 A;  3K52 A;  3T7B A;  4NDR A;  4F6T A;  4NDO A;  3L76 A;  3QVF A;  2BNE A;  2WXB A;  4I49 A;  3K4Y A;  2J4J A;  3U6U A;  3EK5 A;  2R98 A;  4KZT A;  3C1N A;  2W21 A;  2J5T A;  2AKO A;  3KZF A;  4F6T B;  3WWM A;  3K56 A;  4NDQ B;  4NDO B;  4NDP A;  2J0W A;  3L86 A;  3D41 A;  3K4O A;  3NWY A;  3D2P A;  2R8V A;  3ZZH A;  2BND A;  2AP9 A;  2JI5 A;  4JZ9 A;  2HMF A;  2BNF A;  4JZ7 A;  2X2W A;  1YBD A;  3C1M A;  3LKK A;  3LL9 A;  2BRI A;  3AAW A;  4Q1T A;  3S6K A;  4NDP B;  2BUF A;  4AB7 A;  1GSJ A;  4A7X A;  4NDR B;  4JZ8 A;  3QUN A;  3B8G A;  2J4L A;  2CDQ A;  2BTY A; 
#chains in the Genus database with same CATH topology
 1OHB A;  3QVH A;  2IJ9 A;  2J5V A;  2VA1 A;  3WWN A;  2J4K A;  3D2M A;  3EK6 A;  1OHA A;  2JJX A;  4USJ A;  3S6G A;  4A7W A;  2V4Y A;  4OLC A;  3ZZG A;  1B7B A;  3AB4 A;  2RD5 A;  1GS5 A;  1E19 A;  2WE5 A;  3AB2 A;  4NDQ A;  3D40 A;  2OGX A;  3QUO A;  3ZZI A;  1Z9D A;  2E9Y A;  2BRX A;  3QUR A;  3TVI A;  3ZZF A;  3S6H A;  3C20 A;  1OH9 A;  2JJ4 A;  4AXS A;  2BMU A;  2J0X A;  2WE4 A;  2V5H A;  2OGX B;  2A1F A;  3LL5 A;  3K52 A;  3T7B A;  4NDR A;  4F6T A;  4NDO A;  3L76 A;  3QVF A;  2BNE A;  2WXB A;  4I49 A;  3K4Y A;  2J4J A;  3U6U A;  3EK5 A;  2R98 A;  4KZT A;  3C1N A;  2W21 A;  2J5T A;  2AKO A;  3KZF A;  4F6T B;  3WWM A;  3K56 A;  4NDQ B;  4NDO B;  4NDP A;  2J0W A;  3L86 A;  3D41 A;  3K4O A;  3NWY A;  3D2P A;  2R8V A;  3ZZH A;  2BND A;  2AP9 A;  2JI5 A;  4JZ9 A;  2HMF A;  2BNF A;  4JZ7 A;  2X2W A;  1YBD A;  3C1M A;  3LKK A;  3LL9 A;  2BRI A;  3AAW A;  4Q1T A;  3S6K A;  4NDP B;  2BUF A;  4AB7 A;  1GSJ A;  4A7X A;  4NDR B;  4JZ8 A;  3QUN A;  3B8G A;  2J4L A;  2CDQ A;  2BTY A; 
#chains in the Genus database with same CATH homology
 1OHB A;  3QVH A;  2IJ9 A;  2J5V A;  2VA1 A;  3WWN A;  2J4K A;  3D2M A;  3EK6 A;  1OHA A;  2JJX A;  4USJ A;  3S6G A;  4A7W A;  2V4Y A;  4OLC A;  3ZZG A;  1B7B A;  3AB4 A;  2RD5 A;  1GS5 A;  1E19 A;  2WE5 A;  3AB2 A;  4NDQ A;  3D40 A;  2OGX A;  3QUO A;  3ZZI A;  1Z9D A;  2E9Y A;  2BRX A;  3QUR A;  3TVI A;  3ZZF A;  3S6H A;  3C20 A;  1OH9 A;  2JJ4 A;  4AXS A;  2BMU A;  2J0X A;  2WE4 A;  2V5H A;  2OGX B;  2A1F A;  3LL5 A;  3K52 A;  3T7B A;  4NDR A;  4F6T A;  4NDO A;  3L76 A;  3QVF A;  2BNE A;  2WXB A;  4I49 A;  3K4Y A;  2J4J A;  3U6U A;  3EK5 A;  2R98 A;  4KZT A;  3C1N A;  2W21 A;  2J5T A;  2AKO A;  3KZF A;  4F6T B;  3WWM A;  3K56 A;  4NDQ B;  4NDO B;  4NDP A;  2J0W A;  3L86 A;  3D41 A;  3K4O A;  3NWY A;  3D2P A;  2R8V A;  3ZZH A;  2BND A;  2AP9 A;  2JI5 A;  4JZ9 A;  2HMF A;  2BNF A;  4JZ7 A;  2X2W A;  1YBD A;  3C1M A;  3LKK A;  3LL9 A;  2BRI A;  3AAW A;  4Q1T A;  3S6K A;  4NDP B;  2BUF A;  4AB7 A;  1GSJ A;  4A7X A;  4NDR B;  4JZ8 A;  3QUN A;  3B8G A;  2J4L A;  2CDQ A;  2BTY A; 
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