2V63I

Crystal structure of rubisco from chlamydomonas reinhardtii with a large-subunit v331a mutation
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
139
structure length
139
Chain Sequence
MVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
publication title Structural Analysis of Altered Large-Subunit Loop-6-Carboxy-Terminus Interactions that Influence Catalytic Efficiency and Co2 O2 Specificity of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 30
structure length 139
sequence length 139
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2007-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 2v63I00
3AXKS 4F0HB 1UW9C 4F0KB 1RCXC 1UPMC 4MKVS 2YBVB 8RUCI 3AXMS 2VDHI 3RUBS 1EJ7S 1AA1C 1IR1S 1RSCI 1UZDC 1WDDS 2V69I 1UPPI 1UWAC 1UZHC 1RBOC 1RBLI 1RXOC 4RUBS 2V63I 4HHHS 4F0MB 1RLCS 1IWAB 1BXNI 2V68I 1RCOC 2V6AI 1AUSS 3ZXWB 1BWVS 1RLDS 2V67I 1IR21 2VDII 1SVDM 1GK8I
chains in the Genus database with same CATH superfamily
3AXKS 2FHZA 4F0HB 1UW9C 4F0KB 1RCXC 1UPMC 4MKVS 2YBVB 4REOA 8RUCI 3QOYA 3TG8A 3AXMS 2VDHI 3RUBS 1ZHOA 1AD2A 1EJ7S 2HW8A 1AA1C 2DFXI 4LQ4A 1IR1S 1MZPA 1RSCI 1UZDC 1WDDS 2V69I 1UPPI 1UWAC 1UZHC 1RBOC 3ZQJA 1RBLI 1CJSA 1RXOC 4QGBA 3U4MA 1I2AA 4QG3A 1DWUA 2V63I 4RUBS 3FPNA 4DFCB 4HHHS 5DM60 1RLCS 1IWAB 1BXNI 2V68I 4F0MB 4F9TA 1RCOC 2V6AI 3U56A 1U63A 1AUSS 3ZXWB 1BWVS 5DM70 1RLDS 2V67I 1IR21 4QVIA 2VDII 1SVDM 3UMYA 1GK8I
chains in the Genus database with same CATH topology
3AXKS 4F0HB 1UW9C 4F0KB 1RCXC 1UPMC 4MKVS 2YBVB 8RUCI 3AXMS 2VDHI 3RUBS 1EJ7S 1AA1C 1IR1S 1RSCI 1UZDC 1WDDS 2V69I 1UPPI 1UWAC 1UZHC 1RBOC 1RBLI 1RXOC 4RUBS 2V63I 4HHHS 4F0MB 1RLCS 1IWAB 1BXNI 2V68I 1RCOC 2V6AI 1AUSS 3ZXWB 1BWVS 1RLDS 2V67I 1IR21 2VDII 1SVDM 1GK8I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AXK S;  4F0H B;  1UW9 C;  4F0K B;  1RCX C;  1UPM C;  4MKV S;  2YBV B;  8RUC I;  3AXM S;  2VDH I;  3RUB S;  1EJ7 S;  1AA1 C;  1IR1 S;  1RSC I;  1UZD C;  1WDD S;  2V69 I;  1UPP I;  1UWA C;  1UZH C;  1RBO C;  1RBL I;  1RXO C;  4RUB S;  2V63 I;  4HHH S;  4F0M B;  1RLC S;  1IWA B;  1BXN I;  2V68 I;  1RCO C;  2V6A I;  1AUS S;  3ZXW B;  1BWV S;  1RLD S;  2V67 I;  1IR2 1;  2VDI I;  1SVD M;  1GK8 I; 
#chains in the Genus database with same CATH topology
 3AXK S;  2FHZ A;  4F0H B;  1UW9 C;  4F0K B;  1RCX C;  1UPM C;  4MKV S;  2YBV B;  4REO A;  8RUC I;  3QOY A;  3TG8 A;  3AXM S;  2VDH I;  3RUB S;  1ZHO A;  1AD2 A;  1EJ7 S;  2HW8 A;  1AA1 C;  2DFX I;  4LQ4 A;  1IR1 S;  1MZP A;  1RSC I;  1UZD C;  1WDD S;  2V69 I;  1UPP I;  1UWA C;  1UZH C;  1RBO C;  3ZQJ A;  1RBL I;  1CJS A;  1RXO C;  4QGB A;  3U4M A;  1I2A A;  4QG3 A;  1DWU A;  2V63 I;  4RUB S;  3FPN A;  4DFC B;  4HHH S;  5DM6 0;  1RLC S;  1IWA B;  1BXN I;  2V68 I;  4F0M B;  4F9T A;  1RCO C;  2V6A I;  3U56 A;  1U63 A;  1AUS S;  3ZXW B;  1BWV S;  5DM7 0;  1RLD S;  2V67 I;  1IR2 1;  4QVI A;  2VDI I;  1SVD M;  3UMY A;  1GK8 I; 
#chains in the Genus database with same CATH homology
 3AXK S;  4F0H B;  1UW9 C;  4F0K B;  1RCX C;  1UPM C;  4MKV S;  2YBV B;  8RUC I;  3AXM S;  2VDH I;  3RUB S;  1EJ7 S;  1AA1 C;  1IR1 S;  1RSC I;  1UZD C;  1WDD S;  2V69 I;  1UPP I;  1UWA C;  1UZH C;  1RBO C;  1RBL I;  1RXO C;  4RUB S;  2V63 I;  4HHH S;  4F0M B;  1RLC S;  1IWA B;  1BXN I;  2V68 I;  1RCO C;  2V6A I;  1AUS S;  3ZXW B;  1BWV S;  1RLD S;  2V67 I;  1IR2 1;  2VDI I;  1SVD M;  1GK8 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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