2V68I

Crystal structure of chlamydomonas reinhardtii rubisco with large- subunit mutations v331a, t342i
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
139
structure length
139
Chain Sequence
MVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
publication title Structural Analysis of Altered Large-Subunit Loop-6-Carboxy-Terminus Interactions that Influence Catalytic Efficiency and Co2 O2 Specificity of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 30
structure length 139
sequence length 139
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2007-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 2v68I00
1IWAB 1RBLI 1BXNI 1UPPI 1RBOC 4F0HB 1SVDM 1AUSS 1RXOC 2V67I 8RUCI 1GK8I 2V68I 3ZXWB 4HHHS 2V6AI 1RLDS 1WDDS 1RCOC 1RLCS 1RSCI 2VDHI 3AXKS 1UPMC 1UWAC 1UZHC 2V69I 2YBVB 1AA1C 1BWVS 4MKVS 3RUBS 2VDII 3AXMS 4F0MB 2V63I 1IR21 1EJ7S 1RCXC 1UW9C 1UZDC 1IR1S 4RUBS 4F0KB
chains in the Genus database with same CATH superfamily
1IWAB 1RBLI 1BXNI 1UPPI 1RBOC 4F0HB 3UMYA 1SVDM 1DWUA 2HW8A 1AUSS 3U4MA 2DFXI 1RXOC 2V67I 4LQ4A 1GK8I 8RUCI 2V68I 3ZXWB 4HHHS 2V6AI 1RLDS 1WDDS 1RCOC 1RLCS 1RSCI 2VDHI 3AXKS 4REOA 4DFCB 1UPMC 3TG8A 1UWAC 1UZHC 2V69I 1MZPA 2YBVB 1AA1C 1AD2A 4F9TA 1BWVS 4MKVS 5DM70 3RUBS 4QVIA 2VDII 3U56A 3AXMS 4F0MB 2V63I 3FPNA 1U63A 3QOYA 1IR21 1CJSA 1EJ7S 2FHZA 5DM60 1RCXC 1UW9C 3ZQJA 1UZDC 1IR1S 4QG3A 1I2AA 4RUBS 4QGBA 1ZHOA 4F0KB
chains in the Genus database with same CATH topology
1IWAB 1RBLI 1BXNI 1UPPI 1RBOC 4F0HB 1SVDM 1AUSS 1RXOC 2V67I 8RUCI 1GK8I 2V68I 3ZXWB 4HHHS 2V6AI 1RLDS 1WDDS 1RCOC 1RLCS 1RSCI 2VDHI 3AXKS 1UPMC 1UWAC 1UZHC 2V69I 2YBVB 1AA1C 1BWVS 4MKVS 3RUBS 2VDII 3AXMS 4F0MB 2V63I 1IR21 1EJ7S 1RCXC 1UW9C 1UZDC 1IR1S 4RUBS 4F0KB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IWA B;  1RBL I;  1BXN I;  1UPP I;  1RBO C;  4F0H B;  1SVD M;  1AUS S;  1RXO C;  2V67 I;  8RUC I;  1GK8 I;  2V68 I;  3ZXW B;  4HHH S;  2V6A I;  1RLD S;  1WDD S;  1RCO C;  1RLC S;  1RSC I;  2VDH I;  3AXK S;  1UPM C;  1UWA C;  1UZH C;  2V69 I;  2YBV B;  1AA1 C;  1BWV S;  4MKV S;  3RUB S;  2VDI I;  3AXM S;  4F0M B;  2V63 I;  1IR2 1;  1EJ7 S;  1RCX C;  1UW9 C;  1UZD C;  1IR1 S;  4RUB S;  4F0K B; 
#chains in the Genus database with same CATH topology
 1IWA B;  1RBL I;  1BXN I;  1UPP I;  1RBO C;  4F0H B;  3UMY A;  1SVD M;  1DWU A;  2HW8 A;  1AUS S;  3U4M A;  2DFX I;  1RXO C;  2V67 I;  4LQ4 A;  1GK8 I;  8RUC I;  2V68 I;  3ZXW B;  4HHH S;  2V6A I;  1RLD S;  1WDD S;  1RCO C;  1RLC S;  1RSC I;  2VDH I;  3AXK S;  4REO A;  4DFC B;  1UPM C;  3TG8 A;  1UWA C;  1UZH C;  2V69 I;  1MZP A;  2YBV B;  1AA1 C;  1AD2 A;  4F9T A;  1BWV S;  4MKV S;  5DM7 0;  3RUB S;  4QVI A;  2VDI I;  3U56 A;  3AXM S;  4F0M B;  2V63 I;  3FPN A;  1U63 A;  3QOY A;  1IR2 1;  1CJS A;  1EJ7 S;  2FHZ A;  5DM6 0;  1RCX C;  1UW9 C;  3ZQJ A;  1UZD C;  1IR1 S;  4QG3 A;  1I2A A;  4RUB S;  4QGB A;  1ZHO A;  4F0K B; 
#chains in the Genus database with same CATH homology
 1IWA B;  1RBL I;  1BXN I;  1UPP I;  1RBO C;  4F0H B;  1SVD M;  1AUS S;  1RXO C;  2V67 I;  8RUC I;  1GK8 I;  2V68 I;  3ZXW B;  4HHH S;  2V6A I;  1RLD S;  1WDD S;  1RCO C;  1RLC S;  1RSC I;  2VDH I;  3AXK S;  1UPM C;  1UWA C;  1UZH C;  2V69 I;  2YBV B;  1AA1 C;  1BWV S;  4MKV S;  3RUB S;  2VDI I;  3AXM S;  4F0M B;  2V63 I;  1IR2 1;  1EJ7 S;  1RCX C;  1UW9 C;  1UZD C;  1IR1 S;  4RUB S;  4F0K B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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