2V6AI

Crystal structure of chlamydomonas reinhardtii rubisco with large- subunit mutations v331a, g344s
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
139
structure length
139
Chain Sequence
MVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
publication title Structural Analysis of Altered Large-Subunit Loop-6-Carboxy-Terminus Interactions that Influence Catalytic Efficiency and Co2-O2 Specificity of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 30
structure length 139
sequence length 139
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2007-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 2v6aI00
1AA1C 1UZHC 3AXKS 2V68I 3ZXWB 4MKVS 1IWAB 1GK8I 3RUBS 1IR21 4RUBS 1RBOC 4F0HB 2V67I 1BWVS 8RUCI 1RBLI 1AUSS 3AXMS 4F0MB 1RLDS 1WDDS 2V69I 1UZDC 1EJ7S 1IR1S 1BXNI 1RXOC 1RLCS 1UW9C 2VDII 4HHHS 1RSCI 1RCOC 1UPMC 1RCXC 2V63I 2YBVB 1UPPI 1SVDM 1UWAC 2V6AI 2VDHI 4F0KB
chains in the Genus database with same CATH superfamily
1AA1C 1U63A 1UZHC 3AXKS 2V68I 3ZXWB 4MKVS 5DM60 1IWAB 1GK8I 3RUBS 1I2AA 3TG8A 1IR21 2HW8A 4DFCB 1ZHOA 4RUBS 1RBOC 4F0HB 2V67I 4QG3A 3U4MA 4QGBA 3ZQJA 1BWVS 5DM70 8RUCI 1RBLI 1AUSS 3AXMS 2DFXI 4REOA 4F0MB 1AD2A 1RLDS 1WDDS 2V69I 1UZDC 4LQ4A 1DWUA 3QOYA 1EJ7S 1IR1S 1MZPA 1BXNI 1RXOC 1RLCS 1UW9C 2VDII 3FPNA 4HHHS 1RSCI 4QVIA 3U56A 1RCOC 1UPMC 4F9TA 1RCXC 2V63I 2YBVB 3UMYA 1UPPI 1SVDM 1UWAC 2FHZA 2V6AI 2VDHI 4F0KB 1CJSA
chains in the Genus database with same CATH topology
1AA1C 1UZHC 3AXKS 2V68I 3ZXWB 4MKVS 1IWAB 1GK8I 3RUBS 1IR21 4RUBS 1RBOC 4F0HB 2V67I 1BWVS 8RUCI 1RBLI 1AUSS 3AXMS 4F0MB 1RLDS 1WDDS 2V69I 1UZDC 1EJ7S 1IR1S 1BXNI 1RXOC 1RLCS 1UW9C 2VDII 4HHHS 1RSCI 1RCOC 1UPMC 1RCXC 2V63I 2YBVB 1UPPI 1SVDM 1UWAC 2V6AI 2VDHI 4F0KB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AA1 C;  1UZH C;  3AXK S;  2V68 I;  3ZXW B;  4MKV S;  1IWA B;  1GK8 I;  3RUB S;  1IR2 1;  4RUB S;  1RBO C;  4F0H B;  2V67 I;  1BWV S;  8RUC I;  1RBL I;  1AUS S;  3AXM S;  4F0M B;  1RLD S;  1WDD S;  2V69 I;  1UZD C;  1EJ7 S;  1IR1 S;  1BXN I;  1RXO C;  1RLC S;  1UW9 C;  2VDI I;  4HHH S;  1RSC I;  1RCO C;  1UPM C;  1RCX C;  2V63 I;  2YBV B;  1UPP I;  1SVD M;  1UWA C;  2V6A I;  2VDH I;  4F0K B; 
#chains in the Genus database with same CATH topology
 1AA1 C;  1U63 A;  1UZH C;  3AXK S;  2V68 I;  3ZXW B;  4MKV S;  5DM6 0;  1IWA B;  1GK8 I;  3RUB S;  1I2A A;  3TG8 A;  1IR2 1;  2HW8 A;  4DFC B;  1ZHO A;  4RUB S;  1RBO C;  4F0H B;  2V67 I;  4QG3 A;  3U4M A;  4QGB A;  3ZQJ A;  1BWV S;  5DM7 0;  8RUC I;  1RBL I;  1AUS S;  3AXM S;  2DFX I;  4REO A;  4F0M B;  1AD2 A;  1RLD S;  1WDD S;  2V69 I;  1UZD C;  4LQ4 A;  1DWU A;  3QOY A;  1EJ7 S;  1IR1 S;  1MZP A;  1BXN I;  1RXO C;  1RLC S;  1UW9 C;  2VDI I;  3FPN A;  4HHH S;  1RSC I;  4QVI A;  3U56 A;  1RCO C;  1UPM C;  4F9T A;  1RCX C;  2V63 I;  2YBV B;  3UMY A;  1UPP I;  1SVD M;  1UWA C;  2FHZ A;  2V6A I;  2VDH I;  4F0K B;  1CJS A; 
#chains in the Genus database with same CATH homology
 1AA1 C;  1UZH C;  3AXK S;  2V68 I;  3ZXW B;  4MKV S;  1IWA B;  1GK8 I;  3RUB S;  1IR2 1;  4RUB S;  1RBO C;  4F0H B;  2V67 I;  1BWV S;  8RUC I;  1RBL I;  1AUS S;  3AXM S;  4F0M B;  1RLD S;  1WDD S;  2V69 I;  1UZD C;  1EJ7 S;  1IR1 S;  1BXN I;  1RXO C;  1RLC S;  1UW9 C;  2VDI I;  4HHH S;  1RSC I;  1RCO C;  1UPM C;  1RCX C;  2V63 I;  2YBV B;  1UPP I;  1SVD M;  1UWA C;  2V6A I;  2VDH I;  4F0K B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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