The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
21
|
sequence length |
156
|
structure length |
102
|
Chain Sequence |
SMAWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTYLLDFRSIDDEVAPRPGSHTIEFFEMCANLIKILAQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Basis for AMP Binding to Mammalian AMP-Activated Protein Kinase
pubmed doi rcsb |
| molecule keywords |
5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1
|
| source organism |
Rattus norvegicus
|
| molecule tags |
Transferase
|
| total genus |
21
|
| structure length |
102
|
| sequence length |
156
|
| ec nomenclature |
ec
2.7.11.1: Non-specific serine/threonine protein kinase. |
| pdb deposition date | 2007-08-20 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | Kinase associated domain 1, KA1 |
#chains in the Genus database with same CATH superfamily 2YA3 A; 2OOX A; 1V5S A; 4EAI A; 4CFF A; 2QRC A; 4EAG A; 2Y8L A; 4EAK A; 2QRE A; 2Y8Q A; 2V92 A; 3TDH A; 4EAJ A; 3TE5 A; 2V9J A; 4EAL A; 2QRD A; 2QLV A; 2OOY A; 3OSE A; 2V8Q A; 3T4N A; 2QR1 A; 2ZFD B; 1UL7 A; 2EHB D; #chains in the Genus database with same CATH topology 3PDK A; 4EJZ A; 2D0C A; 2FGT A; 3SNS A; 4ROC B; 1KFQ A; 5HSH A; 5JN5 A; 3I3W A; 2LAE A; 1KY6 A; 1EBM A; 1M3Q A; 3OH9 A; 1LXT A; 3H1Z A; 1PCM X; 4EJY A; 1KFI A; 1NH2 A; 1C9B B; 3CWS A; 1Q9U A; 1RM1 A; 1UT7 A; 1PZD A; 4I8O A; 3CWU A; 1UT4 A; 2HL8 A; 2NOB A; 1B9K A; 3ULX A; 1N39 A; 3ENO C; 1TBA B; 3CW7 A; 3OST A; 1C47 A; 5BMP A; 1KYU A; 1NGM A; 3OCI A; 2QRD A; 1N3C A; 3OSE A; 4B0A A; 2Z0F A; 1NVP A; 1KY7 A; 3PMG A; 1KYD A; 3EIK A; 1K2Y X; 5IYC P; 3KTU A; 2NOZ A; 1LWY A; 2H4L X; 5EPC A; 2YA3 A; 2Z8U A; 1V5S A; 3I0W A; 1C4G A; 3IH7 A; 4HJH A; 2NWV A; 1QN7 A; 1T6A A; 2HKP A; 1N3A A; 3DPT A; 5IYB P; 1TUO A; 2F7L A; 2Y8L A; 1P5D X; 3HS8 A; 1QNE A; 5IYD P; 4WZS D; 1PVS A; 2QRE A; 2V92 A; 1E42 A; 3D7Q A; 1QN4 A; 3ENC A; 1QN3 A; 2HZS A; 1TBP A; 1YQL A; 2NLV A; 3UW2 A; 2V9J A; 1LWW A; 3CVT A; 2YH5 A; 2IV8 A; 4WX8 A; 4TPS A; 3OH6 A; 1R4X A; 3HS9 A; 1D3U A; 3RPJ A; 3N89 A; 3VN5 A; 1M5Q 1; 2NOE A; 2NOL A; 1W80 A; 1DIZ A; 1P5G X; 2HL9 A; 2MZ8 A; 1PCZ A; 3F10 A; 4C7P A; 3OGD A; 1HU0 A; 1AIS A; 2D0B A; 3C04 A; 1WJW A; 5KL0 A; 1YTB A; 4EAI A; 1XSZ A; 4EAG A; 2FKF A; 1YQR A; 2JPI A; 1QN9 A; 1JDY A; 2NOH A; 1EUV A; 1QNA A; 1KO9 A; 4D7Q A; 1FN7 A; 4IL8 A; 2PWW A; 1J3M A; 2Y8Q A; 5AN4 A; 3RSM A; 1YQM A; 1CDW A; 1QNC A; 2NOF A; 4DUL A; 3TE5 A; 3D4V A; 1VTL E; 1KYF A; 4MRQ A; 4EAL A; 4QG5 A; 1QTS A; 1M3H A; 2HZM A; 2OOY A; 2G30 A; 3EAY A; 2NOI A; 2V8Q A; 3OC3 C; 1QTP A; 5JMV D; 3OLP A; 1QN6 A; 4WXA A; 2FUV A; 4BJU A; 2NVM A; 1VKL A; 1LWV A; 2DKA A; 2OOX A; 3CWT A; 5F9C A; 1K35 A; 2JHJ A; 4ROE B; 1YQK A; 1MPG A; 4CFF A; 1QN8 A; 2D0A A; 2DKD A; 1VOK A; 3DPU A; 2QRC A; 3CWA A; 2O3O A; 1MP9 A; 4EAK A; 1VTO A; 1WQA A; 1VOL B; 3I0X A; 3ASM A; 2IV9 A; 3KRM A; 4Q11 A; 4ROD B; 2H5A X; 2XHI A; 2MJ7 A; 2FKM X; 3TDH A; 3CVS A; 4EAJ A; 3BKQ X; 2VJ0 A; 1QN5 A; 1TGH A; 1YTF A; 2JHN A; 1JFI C; 3OSM A; 2QLV A; 3NA5 A; 2I5W A; 3T4N A; 2JOI A; 2R5X A; 1QNB A; 4PY5 A; 2QR1 A; 2DKC A; 2ZFD B; 1UL7 A; 4D7R A; 5BMN A; 3F0Z A; 1PCJ X; 2EHB D; #chains in the Genus database with same CATH homology 2YA3 A; 2OOX A; 1V5S A; 4EAI A; 4CFF A; 2QRC A; 4EAG A; 2Y8L A; 4EAK A; 2QRE A; 2Y8Q A; 2V92 A; 3TDH A; 4EAJ A; 3TE5 A; 2V9J A; 4EAL A; 2QRD A; 2QLV A; 2OOY A; 3OSE A; 2V8Q A; 3T4N A; 2QR1 A; 2ZFD B; 1UL7 A; 2EHB D;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
