2VACA

Structure of n-terminal actin depolymerizing factor homology (adf-h) domain of human twinfilin-2
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
134
structure length
134
Chain Sequence
SMGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFAGYQKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords TWINFILIN-2
publication title Crystal Structure of N-Terminal Actin Depolymerizing Factor Homology (Adf-H) Domain of Human Twinfilin-2
rcsb
source organism Homo sapiens
total genus 39
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2007-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2vacA00
4S10C 3CJBG 2XF1A 5HVKD 2NUPA 5KYUB 2MP4A 2W0IA 3EG9A 1X67A 3FG6A 2NUTA 2FH1A 1F7SA 1UDMA 3EGXB 3DAWB 4CBXG 1JHWA 1SVQA 4KEEA 3CIPG 2FGHA 1PD1A 1SVRA 1KCQA 1VKKA 2FH4A 4CBWG 1YAGG 2MV2A 3FFNA 3TU5B 2MOTA 1P8ZG 5KYUA 2L72A 1AHQA 2LLFA 1M4JA 5A1MA 3A5OS 4PKGG 1YVNG 1Q8GA 3L50A 1WFSA 1D4XG 1C0GS 3EGXA 3EH2A 1T3XA 5KYWB 3EGDA 4CBUG 1MDUA 1PD0A 2VACA 5IVUA 4KEFA 3EFOB 3EGDB 5KYNA 3CI5G 2D8BA 4Z94G 2FF3A 1T44G 1NMDG 2FH2A 5KYYB 2KVKA 4PKHB 1DEJS 1J72A 1P8XA 1QPVA 5DD2A 4PKIG 3FG7A 3FFKA 5KYWA 5L6WC 1ESVS 4BEX1 1VFQA 1EQYS 1TMWA 3EFOA 1M2VB 4KEDA 2LJ8A 2LXXA 1PCXA 4JD2H 1AK7A 2VIKA 3A5NS 5FAFA 1NPHA 5KYYA 1H1VG 5KYXB 3EH1A 1NLVG 2NUPB 1T2LA 1AK6A 1WNJA 2FH3A 2XFAA 1C0FS 3EG9B 2NUTB 3Q2BA 1SVYA 1NM1G 1WM4A 1T3YA 2QTVA 1D0NA 1CFYA 1CNUA 1HQZ1 1M2VA 2VILA 2FF6G 5HVKB 4LIZA 1COFA 2I2QA 1RGIG 2HD7A 1Q8XA 1M2OA 1TVJA 1V6FA 3CJCG 3A5LS 3A5MS 5KYXA 5FAEA
chains in the Genus database with same CATH superfamily
4S10C 3CJBG 2XF1A 5HVKD 2NUPA 5KYUB 2MP4A 2W0IA 3EG9A 1X67A 3FG6A 2NUTA 2FH1A 1F7SA 1UDMA 3EGXB 3DAWB 4CBXG 1JHWA 1SVQA 4KEEA 3CIPG 2FGHA 1PD1A 1SVRA 1KCQA 1VKKA 2FH4A 4CBWG 1YAGG 2MV2A 3FFNA 3TU5B 2MOTA 1P8ZG 5KYUA 2L72A 1AHQA 2LLFA 1M4JA 5A1MA 3A5OS 4PKGG 1YVNG 1Q8GA 3L50A 1WFSA 1D4XG 1C0GS 3EGXA 3EH2A 1T3XA 5KYWB 3EGDA 4CBUG 1MDUA 1PD0A 2VACA 5IVUA 4KEFA 3EFOB 3EGDB 5KYNA 3CI5G 2D8BA 4Z94G 2FF3A 1T44G 1NMDG 2FH2A 5KYYB 2KVKA 4PKHB 1DEJS 1J72A 1P8XA 1QPVA 5DD2A 3DA7A 4PKIG 3FG7A 3FFKA 5KYWA 5L6WC 1ESVS 4BEX1 1VFQA 1EQYS 1TMWA 3EFOA 1M2VB 4KEDA 2LJ8A 2LXXA 1PCXA 4JD2H 1AK7A 2VIKA 3A5NS 5FAFA 1NPHA 5KYYA 1H1VG 5KYXB 3EH1A 1NLVG 2NUPB 1T2LA 1AK6A 1WNJA 2FH3A 2XFAA 1C0FS 3EG9B 2NUTB 3Q2BA 1SVYA 1NM1G 1WM4A 1T3YA 2QTVA 1D0NA 1CFYA 1CNUA 1HQZ1 1M2VA 2VILA 2FF6G 5HVKB 4LIZA 1COFA 2I2QA 1RGIG 2HD7A 1Q8XA 1M2OA 1TVJA 1V6FA 3CJCG 3A5LS 3A5MS 5KYXA 5FAEA
chains in the Genus database with same CATH topology
4S10C 3CJBG 2XF1A 5HVKD 2NUPA 5KYUB 2MP4A 2W0IA 3EG9A 1X67A 3FG6A 2NUTA 2FH1A 1F7SA 1UDMA 3EGXB 3DAWB 4CBXG 1JHWA 1SVQA 4KEEA 3CIPG 2FGHA 1PD1A 1SVRA 1KCQA 1VKKA 2FH4A 4CBWG 1YAGG 2MV2A 3FFNA 3TU5B 2MOTA 1P8ZG 5KYUA 2L72A 1AHQA 2LLFA 1M4JA 5A1MA 3A5OS 4PKGG 1YVNG 1Q8GA 3L50A 1WFSA 1D4XG 1C0GS 3EGXA 3EH2A 1T3XA 5KYWB 3EGDA 4CBUG 1MDUA 1PD0A 2VACA 5IVUA 4KEFA 3EFOB 3EGDB 5KYNA 3CI5G 2D8BA 4Z94G 2FF3A 1T44G 1NMDG 2FH2A 5KYYB 2KVKA 4PKHB 1DEJS 1J72A 1P8XA 1QPVA 5DD2A 3DA7A 4PKIG 3FG7A 3FFKA 5KYWA 5L6WC 1ESVS 4BEX1 1VFQA 1EQYS 1TMWA 3EFOA 1M2VB 4KEDA 2LJ8A 2LXXA 1PCXA 4JD2H 1AK7A 2VIKA 3A5NS 5FAFA 1NPHA 5KYYA 1H1VG 5KYXB 3EH1A 1NLVG 2NUPB 1T2LA 1AK6A 1WNJA 2FH3A 2XFAA 1C0FS 3EG9B 2NUTB 3Q2BA 1SVYA 1NM1G 1WM4A 1T3YA 2QTVA 1D0NA 1CFYA 1CNUA 1HQZ1 1M2VA 2VILA 2FF6G 5HVKB 4LIZA 1COFA 2I2QA 1RGIG 2HD7A 1Q8XA 1M2OA 1TVJA 1V6FA 3CJCG 3A5LS 3A5MS 5KYXA 5FAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4S10 C;  3CJB G;  2XF1 A;  5HVK D;  2NUP A;  5KYU B;  2MP4 A;  2W0I A;  3EG9 A;  1X67 A;  3FG6 A;  2NUT A;  2FH1 A;  1F7S A;  1UDM A;  3EGX B;  3DAW B;  4CBX G;  1JHW A;  1SVQ A;  4KEE A;  3CIP G;  2FGH A;  1PD1 A;  1SVR A;  1KCQ A;  1VKK A;  2FH4 A;  4CBW G;  1YAG G;  2MV2 A;  3FFN A;  3TU5 B;  2MOT A;  1P8Z G;  5KYU A;  2L72 A;  1AHQ A;  2LLF A;  1M4J A;  5A1M A;  3A5O S;  4PKG G;  1YVN G;  1Q8G A;  3L50 A;  1WFS A;  1D4X G;  1C0G S;  3EGX A;  3EH2 A;  1T3X A;  5KYW B;  3EGD A;  4CBU G;  1MDU A;  1PD0 A;  2VAC A;  5IVU A;  4KEF A;  3EFO B;  3EGD B;  5KYN A;  3CI5 G;  2D8B A;  4Z94 G;  2FF3 A;  1T44 G;  1NMD G;  2FH2 A;  5KYY B;  2KVK A;  4PKH B;  1DEJ S;  1J72 A;  1P8X A;  1QPV A;  5DD2 A;  4PKI G;  3FG7 A;  3FFK A;  5KYW A;  5L6W C;  1ESV S;  4BEX 1;  1VFQ A;  1EQY S;  1TMW A;  3EFO A;  1M2V B;  4KED A;  2LJ8 A;  2LXX A;  1PCX A;  4JD2 H;  1AK7 A;  2VIK A;  3A5N S;  5FAF A;  1NPH A;  5KYY A;  1H1V G;  5KYX B;  3EH1 A;  1NLV G;  2NUP B;  1T2L A;  1AK6 A;  1WNJ A;  2FH3 A;  2XFA A;  1C0F S;  3EG9 B;  2NUT B;  3Q2B A;  1SVY A;  1NM1 G;  1WM4 A;  1T3Y A;  2QTV A;  1D0N A;  1CFY A;  1CNU A;  1HQZ 1;  1M2V A;  2VIL A;  2FF6 G;  5HVK B;  4LIZ A;  1COF A;  2I2Q A;  1RGI G;  2HD7 A;  1Q8X A;  1M2O A;  1TVJ A;  1V6F A;  3CJC G;  3A5L S;  3A5M S;  5KYX A;  5FAE A; 
#chains in the Genus database with same CATH topology
 4S10 C;  3CJB G;  2XF1 A;  5HVK D;  2NUP A;  5KYU B;  2MP4 A;  2W0I A;  3EG9 A;  1X67 A;  3FG6 A;  2NUT A;  2FH1 A;  1F7S A;  1UDM A;  3EGX B;  3DAW B;  4CBX G;  1JHW A;  1SVQ A;  4KEE A;  3CIP G;  2FGH A;  1PD1 A;  1SVR A;  1KCQ A;  1VKK A;  2FH4 A;  4CBW G;  1YAG G;  2MV2 A;  3FFN A;  3TU5 B;  2MOT A;  1P8Z G;  5KYU A;  2L72 A;  1AHQ A;  2LLF A;  1M4J A;  5A1M A;  3A5O S;  4PKG G;  1YVN G;  1Q8G A;  3L50 A;  1WFS A;  1D4X G;  1C0G S;  3EGX A;  3EH2 A;  1T3X A;  5KYW B;  3EGD A;  4CBU G;  1MDU A;  1PD0 A;  2VAC A;  5IVU A;  4KEF A;  3EFO B;  3EGD B;  5KYN A;  3CI5 G;  2D8B A;  4Z94 G;  2FF3 A;  1T44 G;  1NMD G;  2FH2 A;  5KYY B;  2KVK A;  4PKH B;  1DEJ S;  1J72 A;  1P8X A;  1QPV A;  5DD2 A;  3DA7 A;  4PKI G;  3FG7 A;  3FFK A;  5KYW A;  5L6W C;  1ESV S;  4BEX 1;  1VFQ A;  1EQY S;  1TMW A;  3EFO A;  1M2V B;  4KED A;  2LJ8 A;  2LXX A;  1PCX A;  4JD2 H;  1AK7 A;  2VIK A;  3A5N S;  5FAF A;  1NPH A;  5KYY A;  1H1V G;  5KYX B;  3EH1 A;  1NLV G;  2NUP B;  1T2L A;  1AK6 A;  1WNJ A;  2FH3 A;  2XFA A;  1C0F S;  3EG9 B;  2NUT B;  3Q2B A;  1SVY A;  1NM1 G;  1WM4 A;  1T3Y A;  2QTV A;  1D0N A;  1CFY A;  1CNU A;  1HQZ 1;  1M2V A;  2VIL A;  2FF6 G;  5HVK B;  4LIZ A;  1COF A;  2I2Q A;  1RGI G;  2HD7 A;  1Q8X A;  1M2O A;  1TVJ A;  1V6F A;  3CJC G;  3A5L S;  3A5M S;  5KYX A;  5FAE A; 
#chains in the Genus database with same CATH homology
 4S10 C;  3CJB G;  2XF1 A;  5HVK D;  2NUP A;  5KYU B;  2MP4 A;  2W0I A;  3EG9 A;  1X67 A;  3FG6 A;  2NUT A;  2FH1 A;  1F7S A;  1UDM A;  3EGX B;  3DAW B;  4CBX G;  1JHW A;  1SVQ A;  4KEE A;  3CIP G;  2FGH A;  1PD1 A;  1SVR A;  1KCQ A;  1VKK A;  2FH4 A;  4CBW G;  1YAG G;  2MV2 A;  3FFN A;  3TU5 B;  2MOT A;  1P8Z G;  5KYU A;  2L72 A;  1AHQ A;  2LLF A;  1M4J A;  5A1M A;  3A5O S;  4PKG G;  1YVN G;  1Q8G A;  3L50 A;  1WFS A;  1D4X G;  1C0G S;  3EGX A;  3EH2 A;  1T3X A;  5KYW B;  3EGD A;  4CBU G;  1MDU A;  1PD0 A;  2VAC A;  5IVU A;  4KEF A;  3EFO B;  3EGD B;  5KYN A;  3CI5 G;  2D8B A;  4Z94 G;  2FF3 A;  1T44 G;  1NMD G;  2FH2 A;  5KYY B;  2KVK A;  4PKH B;  1DEJ S;  1J72 A;  1P8X A;  1QPV A;  5DD2 A;  3DA7 A;  4PKI G;  3FG7 A;  3FFK A;  5KYW A;  5L6W C;  1ESV S;  4BEX 1;  1VFQ A;  1EQY S;  1TMW A;  3EFO A;  1M2V B;  4KED A;  2LJ8 A;  2LXX A;  1PCX A;  4JD2 H;  1AK7 A;  2VIK A;  3A5N S;  5FAF A;  1NPH A;  5KYY A;  1H1V G;  5KYX B;  3EH1 A;  1NLV G;  2NUP B;  1T2L A;  1AK6 A;  1WNJ A;  2FH3 A;  2XFA A;  1C0F S;  3EG9 B;  2NUT B;  3Q2B A;  1SVY A;  1NM1 G;  1WM4 A;  1T3Y A;  2QTV A;  1D0N A;  1CFY A;  1CNU A;  1HQZ 1;  1M2V A;  2VIL A;  2FF6 G;  5HVK B;  4LIZ A;  1COF A;  2I2Q A;  1RGI G;  2HD7 A;  1Q8X A;  1M2O A;  1TVJ A;  1V6F A;  3CJC G;  3A5L S;  3A5M S;  5KYX A;  5FAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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