2VBJA

Molecular basis of human xpc gene recognition and cleavage by engineered homing endonuclease heterodimers
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIEPNQSYKFKHRLKLTFKVTQKTQRRWFLDKLVDEIGVGYVRDEGSVSNYILSEIKPLRNFLTQLQPFLKLKQKQANLVLKITEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA ENDONUCLEASE I-CREI
publication title Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 48
structure length 152
sequence length 152
ec nomenclature ec 3.1.-.-:
pdb deposition date 2007-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2vbjA00
4AADA 3R7PA 4AAEA 4UNCA 1DFAA 5AKMA 1UM2A 2VBOB 2FLDA 5E5OA 5AKNA 5A77A 4AQXA 4UN8G 4AAFA 5A0MB 3MX9A 4LOXA 1P8KZ 1DQ3A 3QQYA 3EH8A 4UNAA 2CW8A 2VBLB 2VBOA 3MIPA 1T9JA 2VBNB 5A74A 2VS8A 4YISA 4YHXA 1N3FA 5A78A 5AKFA 5A0MA 3MXAA 2AB5A 4UN8A 5E5SA 4LQ0A 3FD2A 3UVFA 3OORA 2VBLA 1U0DA 1G9ZA 4D6NA 1VDEA 2VBNA 3MISA 1G9YA 2XE0B 4Z1XA 3KO2A 1BP7A 5A72A 1B24A 2VBJB 4UT0A 4UN9G 4AQUA 5A0WA 1R7MA 4AAGA 1LWSA 2XE0A 2EX5A 1AF5A 5E63A 4D6OA 5E67A 1EF0A 3E54A 2VBJA 3C0XA 1T9IA 1N3EA 4UN9A 2O7MA 4UN7A 1LWTA 4UN7G 3OOLA 4Z1ZA 1JVAA 2CW7A 4YITA 3MXBB 4AABA 2I3QA 3HYIA 1U0CA 3HYJA 4Z20A 5AK9A 4EFJA 2DCHX 3C0WA 2VS7A 4UNBA 2QOJZ 1M5XA 3MXBA 1MOWA 2I3PA
chains in the Genus database with same CATH superfamily
4AADA 3R7PA 4AAEA 4UNCA 1DFAA 5AKMA 1UM2A 2VBOB 2FLDA 5E5OA 5AKNA 5A77A 4AQXA 4UN8G 4AAFA 5A0MB 3MX9A 4LOXA 1P8KZ 1DQ3A 3QQYA 3EH8A 4UNAA 2CW8A 2VBLB 2VBOA 3MIPA 1T9JA 2VBNB 5A74A 2VS8A 4YISA 4YHXA 1N3FA 5A78A 5AKFA 5A0MA 3MXAA 2AB5A 4UN8A 5E5SA 4LQ0A 3FD2A 3UVFA 3OORA 2VBLA 1U0DA 1G9ZA 4D6NA 1VDEA 2VBNA 3MISA 1G9YA 2XE0B 4Z1XA 3KO2A 1BP7A 5A72A 1B24A 2VBJB 4UT0A 4UN9G 4AQUA 5A0WA 1R7MA 2F4LA 4AAGA 1LWSA 2XE0A 4KZSA 2EX5A 1AF5A 5E63A 4D6OA 5E67A 1EF0A 3E54A 2VBJA 3C0XA 1T9IA 1N3EA 4UN9A 2O7MA 4UN7A 1LWTA 4UN7G 3OOLA 4Z1ZA 1JVAA 2CW7A 4YITA 3MXBB 4AABA 2I3QA 3HYIA 1U0CA 3HYJA 4Z20A 5AK9A 4EFJA 2DCHX 3C0WA 2VS7A 4UNBA 2QOJZ 1M5XA 3MXBA 1MOWA 2I3PA
chains in the Genus database with same CATH topology
4AADA 3R7PA 4AAEA 4UNCA 1DFAA 5AKMA 1UM2A 2VBOB 2FLDA 5E5OA 5AKNA 5A77A 4AQXA 4UN8G 4AAFA 5A0MB 3MX9A 4LOXA 1P8KZ 1DQ3A 3QQYA 3EH8A 4UNAA 2CW8A 2VBLB 2VBOA 3MIPA 1T9JA 2VBNB 5A74A 2VS8A 4YISA 4YHXA 1N3FA 5A78A 5AKFA 5A0MA 3MXAA 2AB5A 4UN8A 5E5SA 4LQ0A 3FD2A 3UVFA 3OORA 2VBLA 1U0DA 1G9ZA 4D6NA 1VDEA 2VBNA 3MISA 1G9YA 2XE0B 4Z1XA 3KO2A 1BP7A 5A72A 1B24A 2VBJB 4UT0A 4UN9G 4AQUA 5A0WA 1R7MA 4AAGA 1LWSA 2XE0A 2EX5A 1AF5A 5E63A 4D6OA 5E67A 1EF0A 3E54A 2VBJA 3C0XA 1T9IA 1N3EA 4UN9A 2O7MA 4UN7A 1LWTA 4UN7G 3OOLA 4Z1ZA 1JVAA 2CW7A 4YITA 3MXBB 4AABA 2I3QA 3HYIA 1U0CA 3HYJA 4Z20A 5AK9A 4EFJA 2DCHX 3C0WA 2VS7A 4UNBA 2QOJZ 1M5XA 3MXBA 1MOWA 2I3PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AAD A;  3R7P A;  4AAE A;  4UNC A;  1DFA A;  5AKM A;  1UM2 A;  2VBO B;  2FLD A;  5E5O A;  5AKN A;  5A77 A;  4AQX A;  4UN8 G;  4AAF A;  5A0M B;  3MX9 A;  4LOX A;  1P8K Z;  1DQ3 A;  3QQY A;  3EH8 A;  4UNA A;  2CW8 A;  2VBL B;  2VBO A;  3MIP A;  1T9J A;  2VBN B;  5A74 A;  2VS8 A;  4YIS A;  4YHX A;  1N3F A;  5A78 A;  5AKF A;  5A0M A;  3MXA A;  2AB5 A;  4UN8 A;  5E5S A;  4LQ0 A;  3FD2 A;  3UVF A;  3OOR A;  2VBL A;  1U0D A;  1G9Z A;  4D6N A;  1VDE A;  2VBN A;  3MIS A;  1G9Y A;  2XE0 B;  4Z1X A;  3KO2 A;  1BP7 A;  5A72 A;  1B24 A;  2VBJ B;  4UT0 A;  4UN9 G;  4AQU A;  5A0W A;  1R7M A;  4AAG A;  1LWS A;  2XE0 A;  2EX5 A;  1AF5 A;  5E63 A;  4D6O A;  5E67 A;  1EF0 A;  3E54 A;  2VBJ A;  3C0X A;  1T9I A;  1N3E A;  4UN9 A;  2O7M A;  4UN7 A;  1LWT A;  4UN7 G;  3OOL A;  4Z1Z A;  1JVA A;  2CW7 A;  4YIT A;  3MXB B;  4AAB A;  2I3Q A;  3HYI A;  1U0C A;  3HYJ A;  4Z20 A;  5AK9 A;  4EFJ A;  2DCH X;  3C0W A;  2VS7 A;  4UNB A;  2QOJ Z;  1M5X A;  3MXB A;  1MOW A;  2I3P A; 
#chains in the Genus database with same CATH topology
 4AAD A;  3R7P A;  4AAE A;  4UNC A;  1DFA A;  5AKM A;  1UM2 A;  2VBO B;  2FLD A;  5E5O A;  5AKN A;  5A77 A;  4AQX A;  4UN8 G;  4AAF A;  5A0M B;  3MX9 A;  4LOX A;  1P8K Z;  1DQ3 A;  3QQY A;  3EH8 A;  4UNA A;  2CW8 A;  2VBL B;  2VBO A;  3MIP A;  1T9J A;  2VBN B;  5A74 A;  2VS8 A;  4YIS A;  4YHX A;  1N3F A;  5A78 A;  5AKF A;  5A0M A;  3MXA A;  2AB5 A;  4UN8 A;  5E5S A;  4LQ0 A;  3FD2 A;  3UVF A;  3OOR A;  2VBL A;  1U0D A;  1G9Z A;  4D6N A;  1VDE A;  2VBN A;  3MIS A;  1G9Y A;  2XE0 B;  4Z1X A;  3KO2 A;  1BP7 A;  5A72 A;  1B24 A;  2VBJ B;  4UT0 A;  4UN9 G;  4AQU A;  5A0W A;  1R7M A;  2F4L A;  4AAG A;  1LWS A;  2XE0 A;  4KZS A;  2EX5 A;  1AF5 A;  5E63 A;  4D6O A;  5E67 A;  1EF0 A;  3E54 A;  2VBJ A;  3C0X A;  1T9I A;  1N3E A;  4UN9 A;  2O7M A;  4UN7 A;  1LWT A;  4UN7 G;  3OOL A;  4Z1Z A;  1JVA A;  2CW7 A;  4YIT A;  3MXB B;  4AAB A;  2I3Q A;  3HYI A;  1U0C A;  3HYJ A;  4Z20 A;  5AK9 A;  4EFJ A;  2DCH X;  3C0W A;  2VS7 A;  4UNB A;  2QOJ Z;  1M5X A;  3MXB A;  1MOW A;  2I3P A; 
#chains in the Genus database with same CATH homology
 4AAD A;  3R7P A;  4AAE A;  4UNC A;  1DFA A;  5AKM A;  1UM2 A;  2VBO B;  2FLD A;  5E5O A;  5AKN A;  5A77 A;  4AQX A;  4UN8 G;  4AAF A;  5A0M B;  3MX9 A;  4LOX A;  1P8K Z;  1DQ3 A;  3QQY A;  3EH8 A;  4UNA A;  2CW8 A;  2VBL B;  2VBO A;  3MIP A;  1T9J A;  2VBN B;  5A74 A;  2VS8 A;  4YIS A;  4YHX A;  1N3F A;  5A78 A;  5AKF A;  5A0M A;  3MXA A;  2AB5 A;  4UN8 A;  5E5S A;  4LQ0 A;  3FD2 A;  3UVF A;  3OOR A;  2VBL A;  1U0D A;  1G9Z A;  4D6N A;  1VDE A;  2VBN A;  3MIS A;  1G9Y A;  2XE0 B;  4Z1X A;  3KO2 A;  1BP7 A;  5A72 A;  1B24 A;  2VBJ B;  4UT0 A;  4UN9 G;  4AQU A;  5A0W A;  1R7M A;  4AAG A;  1LWS A;  2XE0 A;  2EX5 A;  1AF5 A;  5E63 A;  4D6O A;  5E67 A;  1EF0 A;  3E54 A;  2VBJ A;  3C0X A;  1T9I A;  1N3E A;  4UN9 A;  2O7M A;  4UN7 A;  1LWT A;  4UN7 G;  3OOL A;  4Z1Z A;  1JVA A;  2CW7 A;  4YIT A;  3MXB B;  4AAB A;  2I3Q A;  3HYI A;  1U0C A;  3HYJ A;  4Z20 A;  5AK9 A;  4EFJ A;  2DCH X;  3C0W A;  2VS7 A;  4UNB A;  2QOJ Z;  1M5X A;  3MXB A;  1MOW A;  2I3P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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