2VBJB

Molecular basis of human xpc gene recognition and cleavage by engineered homing endonuclease heterodimers
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDADGSIIAQIEPNQSSKFKHRLKLTFQVTQKTQRRWFLDKLVDEIGVGYVRDSGSVSNYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA ENDONUCLEASE I-CREI
publication title Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 48
structure length 152
sequence length 152
ec nomenclature ec 3.1.-.-:
pdb deposition date 2007-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2vbjB00
3E54A 4UNAA 1LWSA 3HYIA 1P8KZ 5A0MA 1M5XA 1R7MA 5A0MB 3R7PA 3HYJA 2EX5A 4AADA 5A77A 5AKNA 5E5OA 4UN8A 1U0CA 1BP7A 4EFJA 1G9ZA 1AF5A 5A0WA 4LOXA 2XE0A 3MXAA 4UN7A 2CW7A 3KO2A 3OOLA 4UNCA 1N3FA 5E63A 4D6OA 4UT0A 3QQYA 2FLDA 5A72A 4AAFA 4Z1XA 1T9JA 4UNBA 1LWTA 4UN8G 3C0WA 2VBLB 1T9IA 3MIPA 4D6NA 3C0XA 5A74A 2AB5A 2VS8A 4UN7G 2DCHX 3MX9A 2VBJB 3EH8A 3UVFA 4AQXA 1G9YA 4Z20A 1DQ3A 4AQUA 5A78A 4YITA 2I3QA 1B24A 4LQ0A 5E67A 1DFAA 3MISA 1EF0A 4YHXA 5AKMA 4UN9A 5AK9A 2VBLA 2VBOB 2VBNB 1U0DA 4AAEA 5E5SA 3MXBB 4AABA 2VBJA 3OORA 4YISA 3FD2A 2VS7A 1N3EA 2O7MA 1MOWA 2VBOA 2VBNA 4UN9G 2QOJZ 1VDEA 4AAGA 1UM2A 2CW8A 3MXBA 1JVAA 4Z1ZA 2XE0B 2I3PA 5AKFA
chains in the Genus database with same CATH superfamily
3E54A 4UNAA 1LWSA 3HYIA 1P8KZ 5A0MA 1M5XA 1R7MA 5A0MB 3R7PA 3HYJA 2EX5A 4AADA 5A77A 2F4LA 5AKNA 5E5OA 4UN8A 1U0CA 1BP7A 4EFJA 1G9ZA 1AF5A 5A0WA 4LOXA 2XE0A 3MXAA 4UN7A 2CW7A 3KO2A 3OOLA 4UNCA 1N3FA 5E63A 4D6OA 4UT0A 3QQYA 2FLDA 5A72A 4AAFA 4Z1XA 1T9JA 4UNBA 1LWTA 4UN8G 3C0WA 2VBLB 1T9IA 3MIPA 4D6NA 3C0XA 5A74A 2AB5A 2VS8A 4UN7G 2DCHX 4KZSA 3MX9A 2VBJB 3EH8A 3UVFA 4AQXA 1G9YA 4Z20A 1DQ3A 4AQUA 5A78A 4YITA 2I3QA 1B24A 4LQ0A 5E67A 1DFAA 3MISA 1EF0A 4YHXA 5AKMA 4UN9A 5AK9A 2VBLA 2VBOB 2VBNB 1U0DA 4AAEA 5E5SA 3MXBB 4AABA 2VBJA 3OORA 4YISA 3FD2A 2VS7A 1N3EA 2O7MA 1MOWA 2VBOA 2VBNA 4UN9G 2QOJZ 1VDEA 4AAGA 1UM2A 2CW8A 3MXBA 1JVAA 4Z1ZA 2XE0B 2I3PA 5AKFA
chains in the Genus database with same CATH topology
3E54A 4UNAA 1LWSA 3HYIA 1P8KZ 5A0MA 1M5XA 1R7MA 5A0MB 3R7PA 3HYJA 2EX5A 4AADA 5A77A 5AKNA 5E5OA 4UN8A 1U0CA 1BP7A 4EFJA 1G9ZA 1AF5A 5A0WA 4LOXA 2XE0A 3MXAA 4UN7A 2CW7A 3KO2A 3OOLA 4UNCA 1N3FA 5E63A 4D6OA 4UT0A 3QQYA 2FLDA 5A72A 4AAFA 4Z1XA 1T9JA 4UNBA 1LWTA 4UN8G 3C0WA 2VBLB 1T9IA 3MIPA 4D6NA 3C0XA 5A74A 2AB5A 2VS8A 4UN7G 2DCHX 3MX9A 2VBJB 3EH8A 3UVFA 4AQXA 1G9YA 4Z20A 1DQ3A 4AQUA 5A78A 4YITA 2I3QA 1B24A 4LQ0A 5E67A 1DFAA 3MISA 1EF0A 4YHXA 5AKMA 4UN9A 5AK9A 2VBLA 2VBOB 2VBNB 1U0DA 4AAEA 5E5SA 3MXBB 4AABA 2VBJA 3OORA 4YISA 3FD2A 2VS7A 1N3EA 2O7MA 1MOWA 2VBOA 2VBNA 4UN9G 2QOJZ 1VDEA 4AAGA 1UM2A 2CW8A 3MXBA 1JVAA 4Z1ZA 2XE0B 2I3PA 5AKFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E54 A;  4UNA A;  1LWS A;  3HYI A;  1P8K Z;  5A0M A;  1M5X A;  1R7M A;  5A0M B;  3R7P A;  3HYJ A;  2EX5 A;  4AAD A;  5A77 A;  5AKN A;  5E5O A;  4UN8 A;  1U0C A;  1BP7 A;  4EFJ A;  1G9Z A;  1AF5 A;  5A0W A;  4LOX A;  2XE0 A;  3MXA A;  4UN7 A;  2CW7 A;  3KO2 A;  3OOL A;  4UNC A;  1N3F A;  5E63 A;  4D6O A;  4UT0 A;  3QQY A;  2FLD A;  5A72 A;  4AAF A;  4Z1X A;  1T9J A;  4UNB A;  1LWT A;  4UN8 G;  3C0W A;  2VBL B;  1T9I A;  3MIP A;  4D6N A;  3C0X A;  5A74 A;  2AB5 A;  2VS8 A;  4UN7 G;  2DCH X;  3MX9 A;  2VBJ B;  3EH8 A;  3UVF A;  4AQX A;  1G9Y A;  4Z20 A;  1DQ3 A;  4AQU A;  5A78 A;  4YIT A;  2I3Q A;  1B24 A;  4LQ0 A;  5E67 A;  1DFA A;  3MIS A;  1EF0 A;  4YHX A;  5AKM A;  4UN9 A;  5AK9 A;  2VBL A;  2VBO B;  2VBN B;  1U0D A;  4AAE A;  5E5S A;  3MXB B;  4AAB A;  2VBJ A;  3OOR A;  4YIS A;  3FD2 A;  2VS7 A;  1N3E A;  2O7M A;  1MOW A;  2VBO A;  2VBN A;  4UN9 G;  2QOJ Z;  1VDE A;  4AAG A;  1UM2 A;  2CW8 A;  3MXB A;  1JVA A;  4Z1Z A;  2XE0 B;  2I3P A;  5AKF A; 
#chains in the Genus database with same CATH topology
 3E54 A;  4UNA A;  1LWS A;  3HYI A;  1P8K Z;  5A0M A;  1M5X A;  1R7M A;  5A0M B;  3R7P A;  3HYJ A;  2EX5 A;  4AAD A;  5A77 A;  2F4L A;  5AKN A;  5E5O A;  4UN8 A;  1U0C A;  1BP7 A;  4EFJ A;  1G9Z A;  1AF5 A;  5A0W A;  4LOX A;  2XE0 A;  3MXA A;  4UN7 A;  2CW7 A;  3KO2 A;  3OOL A;  4UNC A;  1N3F A;  5E63 A;  4D6O A;  4UT0 A;  3QQY A;  2FLD A;  5A72 A;  4AAF A;  4Z1X A;  1T9J A;  4UNB A;  1LWT A;  4UN8 G;  3C0W A;  2VBL B;  1T9I A;  3MIP A;  4D6N A;  3C0X A;  5A74 A;  2AB5 A;  2VS8 A;  4UN7 G;  2DCH X;  4KZS A;  3MX9 A;  2VBJ B;  3EH8 A;  3UVF A;  4AQX A;  1G9Y A;  4Z20 A;  1DQ3 A;  4AQU A;  5A78 A;  4YIT A;  2I3Q A;  1B24 A;  4LQ0 A;  5E67 A;  1DFA A;  3MIS A;  1EF0 A;  4YHX A;  5AKM A;  4UN9 A;  5AK9 A;  2VBL A;  2VBO B;  2VBN B;  1U0D A;  4AAE A;  5E5S A;  3MXB B;  4AAB A;  2VBJ A;  3OOR A;  4YIS A;  3FD2 A;  2VS7 A;  1N3E A;  2O7M A;  1MOW A;  2VBO A;  2VBN A;  4UN9 G;  2QOJ Z;  1VDE A;  4AAG A;  1UM2 A;  2CW8 A;  3MXB A;  1JVA A;  4Z1Z A;  2XE0 B;  2I3P A;  5AKF A; 
#chains in the Genus database with same CATH homology
 3E54 A;  4UNA A;  1LWS A;  3HYI A;  1P8K Z;  5A0M A;  1M5X A;  1R7M A;  5A0M B;  3R7P A;  3HYJ A;  2EX5 A;  4AAD A;  5A77 A;  5AKN A;  5E5O A;  4UN8 A;  1U0C A;  1BP7 A;  4EFJ A;  1G9Z A;  1AF5 A;  5A0W A;  4LOX A;  2XE0 A;  3MXA A;  4UN7 A;  2CW7 A;  3KO2 A;  3OOL A;  4UNC A;  1N3F A;  5E63 A;  4D6O A;  4UT0 A;  3QQY A;  2FLD A;  5A72 A;  4AAF A;  4Z1X A;  1T9J A;  4UNB A;  1LWT A;  4UN8 G;  3C0W A;  2VBL B;  1T9I A;  3MIP A;  4D6N A;  3C0X A;  5A74 A;  2AB5 A;  2VS8 A;  4UN7 G;  2DCH X;  3MX9 A;  2VBJ B;  3EH8 A;  3UVF A;  4AQX A;  1G9Y A;  4Z20 A;  1DQ3 A;  4AQU A;  5A78 A;  4YIT A;  2I3Q A;  1B24 A;  4LQ0 A;  5E67 A;  1DFA A;  3MIS A;  1EF0 A;  4YHX A;  5AKM A;  4UN9 A;  5AK9 A;  2VBL A;  2VBO B;  2VBN B;  1U0D A;  4AAE A;  5E5S A;  3MXB B;  4AAB A;  2VBJ A;  3OOR A;  4YIS A;  3FD2 A;  2VS7 A;  1N3E A;  2O7M A;  1MOW A;  2VBO A;  2VBN A;  4UN9 G;  2QOJ Z;  1VDE A;  4AAG A;  1UM2 A;  2CW8 A;  3MXB A;  1JVA A;  4Z1Z A;  2XE0 B;  2I3P A;  5AKF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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