2VBLA

Molecular basis of human xpc gene recognition and cleavage by engineered homing endonuclease heterodimers
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIEPNASYKFKHRLKLTFKVTQKTQRRWFLDKLVDEIGVGYVRDEGSVSNYILSEIKPLRNFLTQLQPFLKLKQKQANLVLKITEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DNA ENDONUCLEASE I-CREI
publication title Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 45
structure length 152
sequence length 152
ec nomenclature ec 3.1.-.-:
pdb deposition date 2007-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2vblA00
5AKMA 4UN9A 3OOLA 1BP7A 5E63A 5E67A 3MXAA 5A78A 1U0CA 5A0MB 1G9YA 4AAFA 2DCHX 2FLDA 4LQ0A 4UN7G 1B24A 2VS7A 3E54A 4YISA 2XE0A 4UNCA 2VBLB 1LWTA 4AAEA 5AKFA 1AF5A 4Z1ZA 5A0WA 2VBOA 5AKNA 4EFJA 3UVFA 1G9ZA 4Z1XA 1EF0A 4UN9G 1N3FA 2EX5A 1R7MA 5E5SA 4UN8A 2I3QA 3MX9A 4AABA 2AB5A 1VDEA 3QQYA 2VBNA 4YHXA 5E5OA 3KO2A 1P8KZ 3HYIA 1U0DA 1M5XA 4AAGA 3FD2A 5A72A 2QOJZ 2XE0B 1DQ3A 2VBJA 1DFAA 4AADA 3MISA 4D6NA 2VBOB 3MXBB 4UN8G 1LWSA 4D6OA 4UNAA 2O7MA 4AQXA 1JVAA 3C0XA 4YITA 5AK9A 5A0MA 4UNBA 3HYJA 2VBNB 3OORA 3EH8A 5A74A 4UT0A 1MOWA 2VBLA 4AQUA 4UN7A 4Z20A 3C0WA 2VS8A 1N3EA 5A77A 2VBJB 1T9JA 1T9IA 3MIPA 3R7PA 2I3PA 4LOXA 2CW8A 2CW7A 3MXBA 1UM2A
chains in the Genus database with same CATH superfamily
5AKMA 4UN9A 3OOLA 1BP7A 5E63A 5E67A 3MXAA 5A78A 1U0CA 5A0MB 1G9YA 4AAFA 2DCHX 2FLDA 4LQ0A 4UN7G 1B24A 2VS7A 3E54A 4YISA 2XE0A 4UNCA 2F4LA 2VBLB 1LWTA 4AAEA 5AKFA 1AF5A 4Z1ZA 5A0WA 2VBOA 5AKNA 4EFJA 3UVFA 1G9ZA 4Z1XA 1EF0A 4UN9G 1N3FA 2EX5A 1R7MA 5E5SA 4UN8A 2I3QA 3MX9A 4KZSA 2AB5A 1VDEA 4AABA 3QQYA 2VBNA 4YHXA 5E5OA 3KO2A 1P8KZ 3HYIA 1U0DA 1M5XA 4AAGA 3FD2A 5A72A 2QOJZ 2XE0B 1DQ3A 2VBJA 1DFAA 4AADA 3MISA 4D6NA 2VBOB 3MXBB 4UN8G 1LWSA 4D6OA 4UNAA 2O7MA 4AQXA 1JVAA 3C0XA 4YITA 5AK9A 5A0MA 4UNBA 3HYJA 2VBNB 3OORA 3EH8A 5A74A 4UT0A 1MOWA 2VBLA 4AQUA 4UN7A 4Z20A 3C0WA 2VS8A 1N3EA 5A77A 2VBJB 1T9JA 1T9IA 3MIPA 3R7PA 2I3PA 4LOXA 2CW8A 2CW7A 3MXBA 1UM2A
chains in the Genus database with same CATH topology
5AKMA 4UN9A 3OOLA 1BP7A 5E63A 5E67A 3MXAA 5A78A 1U0CA 5A0MB 1G9YA 4AAFA 2DCHX 2FLDA 4LQ0A 4UN7G 1B24A 2VS7A 3E54A 4YISA 2XE0A 4UNCA 2VBLB 1LWTA 4AAEA 5AKFA 1AF5A 4Z1ZA 5A0WA 2VBOA 5AKNA 4EFJA 3UVFA 1G9ZA 4Z1XA 1EF0A 4UN9G 1N3FA 2EX5A 1R7MA 5E5SA 4UN8A 2I3QA 3MX9A 4AABA 2AB5A 1VDEA 3QQYA 2VBNA 4YHXA 5E5OA 3KO2A 1P8KZ 3HYIA 1U0DA 1M5XA 4AAGA 3FD2A 5A72A 2QOJZ 2XE0B 1DQ3A 2VBJA 1DFAA 4AADA 3MISA 4D6NA 2VBOB 3MXBB 4UN8G 1LWSA 4D6OA 4UNAA 2O7MA 4AQXA 1JVAA 3C0XA 4YITA 5AK9A 5A0MA 4UNBA 3HYJA 2VBNB 3OORA 3EH8A 5A74A 4UT0A 1MOWA 2VBLA 4AQUA 4UN7A 4Z20A 3C0WA 2VS8A 1N3EA 5A77A 2VBJB 1T9JA 1T9IA 3MIPA 3R7PA 2I3PA 4LOXA 2CW8A 2CW7A 3MXBA 1UM2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AKM A;  4UN9 A;  3OOL A;  1BP7 A;  5E63 A;  5E67 A;  3MXA A;  5A78 A;  1U0C A;  5A0M B;  1G9Y A;  4AAF A;  2DCH X;  2FLD A;  4LQ0 A;  4UN7 G;  1B24 A;  2VS7 A;  3E54 A;  4YIS A;  2XE0 A;  4UNC A;  2VBL B;  1LWT A;  4AAE A;  5AKF A;  1AF5 A;  4Z1Z A;  5A0W A;  2VBO A;  5AKN A;  4EFJ A;  3UVF A;  1G9Z A;  4Z1X A;  1EF0 A;  4UN9 G;  1N3F A;  2EX5 A;  1R7M A;  5E5S A;  4UN8 A;  2I3Q A;  3MX9 A;  4AAB A;  2AB5 A;  1VDE A;  3QQY A;  2VBN A;  4YHX A;  5E5O A;  3KO2 A;  1P8K Z;  3HYI A;  1U0D A;  1M5X A;  4AAG A;  3FD2 A;  5A72 A;  2QOJ Z;  2XE0 B;  1DQ3 A;  2VBJ A;  1DFA A;  4AAD A;  3MIS A;  4D6N A;  2VBO B;  3MXB B;  4UN8 G;  1LWS A;  4D6O A;  4UNA A;  2O7M A;  4AQX A;  1JVA A;  3C0X A;  4YIT A;  5AK9 A;  5A0M A;  4UNB A;  3HYJ A;  2VBN B;  3OOR A;  3EH8 A;  5A74 A;  4UT0 A;  1MOW A;  2VBL A;  4AQU A;  4UN7 A;  4Z20 A;  3C0W A;  2VS8 A;  1N3E A;  5A77 A;  2VBJ B;  1T9J A;  1T9I A;  3MIP A;  3R7P A;  2I3P A;  4LOX A;  2CW8 A;  2CW7 A;  3MXB A;  1UM2 A; 
#chains in the Genus database with same CATH topology
 5AKM A;  4UN9 A;  3OOL A;  1BP7 A;  5E63 A;  5E67 A;  3MXA A;  5A78 A;  1U0C A;  5A0M B;  1G9Y A;  4AAF A;  2DCH X;  2FLD A;  4LQ0 A;  4UN7 G;  1B24 A;  2VS7 A;  3E54 A;  4YIS A;  2XE0 A;  4UNC A;  2F4L A;  2VBL B;  1LWT A;  4AAE A;  5AKF A;  1AF5 A;  4Z1Z A;  5A0W A;  2VBO A;  5AKN A;  4EFJ A;  3UVF A;  1G9Z A;  4Z1X A;  1EF0 A;  4UN9 G;  1N3F A;  2EX5 A;  1R7M A;  5E5S A;  4UN8 A;  2I3Q A;  3MX9 A;  4KZS A;  2AB5 A;  1VDE A;  4AAB A;  3QQY A;  2VBN A;  4YHX A;  5E5O A;  3KO2 A;  1P8K Z;  3HYI A;  1U0D A;  1M5X A;  4AAG A;  3FD2 A;  5A72 A;  2QOJ Z;  2XE0 B;  1DQ3 A;  2VBJ A;  1DFA A;  4AAD A;  3MIS A;  4D6N A;  2VBO B;  3MXB B;  4UN8 G;  1LWS A;  4D6O A;  4UNA A;  2O7M A;  4AQX A;  1JVA A;  3C0X A;  4YIT A;  5AK9 A;  5A0M A;  4UNB A;  3HYJ A;  2VBN B;  3OOR A;  3EH8 A;  5A74 A;  4UT0 A;  1MOW A;  2VBL A;  4AQU A;  4UN7 A;  4Z20 A;  3C0W A;  2VS8 A;  1N3E A;  5A77 A;  2VBJ B;  1T9J A;  1T9I A;  3MIP A;  3R7P A;  2I3P A;  4LOX A;  2CW8 A;  2CW7 A;  3MXB A;  1UM2 A; 
#chains in the Genus database with same CATH homology
 5AKM A;  4UN9 A;  3OOL A;  1BP7 A;  5E63 A;  5E67 A;  3MXA A;  5A78 A;  1U0C A;  5A0M B;  1G9Y A;  4AAF A;  2DCH X;  2FLD A;  4LQ0 A;  4UN7 G;  1B24 A;  2VS7 A;  3E54 A;  4YIS A;  2XE0 A;  4UNC A;  2VBL B;  1LWT A;  4AAE A;  5AKF A;  1AF5 A;  4Z1Z A;  5A0W A;  2VBO A;  5AKN A;  4EFJ A;  3UVF A;  1G9Z A;  4Z1X A;  1EF0 A;  4UN9 G;  1N3F A;  2EX5 A;  1R7M A;  5E5S A;  4UN8 A;  2I3Q A;  3MX9 A;  4AAB A;  2AB5 A;  1VDE A;  3QQY A;  2VBN A;  4YHX A;  5E5O A;  3KO2 A;  1P8K Z;  3HYI A;  1U0D A;  1M5X A;  4AAG A;  3FD2 A;  5A72 A;  2QOJ Z;  2XE0 B;  1DQ3 A;  2VBJ A;  1DFA A;  4AAD A;  3MIS A;  4D6N A;  2VBO B;  3MXB B;  4UN8 G;  1LWS A;  4D6O A;  4UNA A;  2O7M A;  4AQX A;  1JVA A;  3C0X A;  4YIT A;  5AK9 A;  5A0M A;  4UNB A;  3HYJ A;  2VBN B;  3OOR A;  3EH8 A;  5A74 A;  4UT0 A;  1MOW A;  2VBL A;  4AQU A;  4UN7 A;  4Z20 A;  3C0W A;  2VS8 A;  1N3E A;  5A77 A;  2VBJ B;  1T9J A;  1T9I A;  3MIP A;  3R7P A;  2I3P A;  4LOX A;  2CW8 A;  2CW7 A;  3MXB A;  1UM2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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