2VBOA

Molecular basis of human xpc gene recognition and cleavage by engineered homing endonuclease heterodimers
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
153
structure length
153
Chain Sequence
MNTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSSKFKHRLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDSGSVSNYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DNA ENDONUCLEASE I-CREI
publication title Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 49
structure length 153
sequence length 153
ec nomenclature ec 3.1.-.-:
pdb deposition date 2007-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2vboA00
1AF5A 4UNAA 1U0CA 5E5OA 4UN8G 1VDEA 2I3QA 5A78A 3MISA 4D6OA 5E5SA 4LQ0A 2VBLB 4AADA 4UN9G 1LWSA 1T9IA 1UM2A 3MX9A 3MIPA 4EFJA 1DFAA 3MXBA 3HYIA 5AKFA 1R7MA 2EX5A 2FLDA 4AABA 4Z20A 3EH8A 4UT0A 4D6NA 2AB5A 4UN7G 3QQYA 4Z1ZA 1G9YA 5A74A 1B24A 5A72A 3FD2A 4YISA 4YITA 3OORA 2CW7A 5E63A 2VBLA 2VBJB 1LWTA 4AAFA 2QOJZ 4YHXA 2XE0B 3UVFA 1N3FA 5A0WA 5A0MB 3R7PA 1BP7A 3E54A 4Z1XA 3HYJA 2VBNB 2VBJA 4UNBA 3MXAA 4UNCA 3C0XA 2XE0A 3KO2A 2VS7A 4AQXA 5A0MA 5E67A 3OOLA 2VBNA 2VBOB 4AAGA 4AQUA 2O7MA 4AAEA 1T9JA 1DQ3A 1U0DA 2VBOA 1JVAA 2VS8A 1EF0A 5AK9A 3MXBB 1G9ZA 2DCHX 1M5XA 2CW8A 1P8KZ 5A77A 3C0WA 4UN8A 5AKMA 1MOWA 4UN7A 5AKNA 4LOXA 4UN9A 1N3EA 2I3PA
chains in the Genus database with same CATH superfamily
1AF5A 4UNAA 1U0CA 5E5OA 4UN8G 1VDEA 2I3QA 5A78A 3MISA 4D6OA 5E5SA 4LQ0A 2VBLB 4AADA 4UN9G 1LWSA 1T9IA 1UM2A 3MX9A 3MIPA 4EFJA 1DFAA 3MXBA 3HYIA 5AKFA 1R7MA 2EX5A 2FLDA 4AABA 4Z20A 3EH8A 4UT0A 4D6NA 2AB5A 4UN7G 3QQYA 4Z1ZA 1G9YA 5A74A 1B24A 5A72A 3FD2A 4YISA 4YITA 3OORA 2CW7A 5E63A 2VBLA 2VBJB 1LWTA 4AAFA 2QOJZ 4YHXA 2XE0B 3UVFA 1N3FA 5A0WA 5A0MB 3R7PA 1BP7A 3E54A 4Z1XA 3HYJA 2VBNB 2VBJA 4UNBA 3MXAA 4UNCA 3C0XA 2XE0A 3KO2A 2VS7A 4AQXA 5A0MA 5E67A 3OOLA 2VBNA 2VBOB 4AAGA 4AQUA 2O7MA 4AAEA 1T9JA 1DQ3A 1U0DA 2VBOA 1JVAA 2VS8A 4KZSA 1EF0A 5AK9A 3MXBB 1G9ZA 2F4LA 2DCHX 1M5XA 2CW8A 1P8KZ 5A77A 3C0WA 4UN8A 5AKMA 1MOWA 4UN7A 5AKNA 4LOXA 4UN9A 1N3EA 2I3PA
chains in the Genus database with same CATH topology
1AF5A 4UNAA 1U0CA 5E5OA 4UN8G 1VDEA 2I3QA 5A78A 3MISA 4D6OA 5E5SA 4LQ0A 2VBLB 4AADA 4UN9G 1LWSA 1T9IA 1UM2A 3MX9A 3MIPA 4EFJA 1DFAA 3MXBA 3HYIA 5AKFA 1R7MA 2EX5A 2FLDA 4AABA 4Z20A 3EH8A 4UT0A 4D6NA 2AB5A 4UN7G 3QQYA 4Z1ZA 1G9YA 5A74A 1B24A 5A72A 3FD2A 4YISA 4YITA 3OORA 2CW7A 5E63A 2VBLA 2VBJB 1LWTA 4AAFA 2QOJZ 4YHXA 2XE0B 3UVFA 1N3FA 5A0WA 5A0MB 3R7PA 1BP7A 3E54A 4Z1XA 3HYJA 2VBNB 2VBJA 4UNBA 3MXAA 4UNCA 3C0XA 2XE0A 3KO2A 2VS7A 4AQXA 5A0MA 5E67A 3OOLA 2VBNA 2VBOB 4AAGA 4AQUA 2O7MA 4AAEA 1T9JA 1DQ3A 1U0DA 2VBOA 1JVAA 2VS8A 1EF0A 5AK9A 3MXBB 1G9ZA 2DCHX 1M5XA 2CW8A 1P8KZ 5A77A 3C0WA 4UN8A 5AKMA 1MOWA 4UN7A 5AKNA 4LOXA 4UN9A 1N3EA 2I3PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AF5 A;  4UNA A;  1U0C A;  5E5O A;  4UN8 G;  1VDE A;  2I3Q A;  5A78 A;  3MIS A;  4D6O A;  5E5S A;  4LQ0 A;  2VBL B;  4AAD A;  4UN9 G;  1LWS A;  1T9I A;  1UM2 A;  3MX9 A;  3MIP A;  4EFJ A;  1DFA A;  3MXB A;  3HYI A;  5AKF A;  1R7M A;  2EX5 A;  2FLD A;  4AAB A;  4Z20 A;  3EH8 A;  4UT0 A;  4D6N A;  2AB5 A;  4UN7 G;  3QQY A;  4Z1Z A;  1G9Y A;  5A74 A;  1B24 A;  5A72 A;  3FD2 A;  4YIS A;  4YIT A;  3OOR A;  2CW7 A;  5E63 A;  2VBL A;  2VBJ B;  1LWT A;  4AAF A;  2QOJ Z;  4YHX A;  2XE0 B;  3UVF A;  1N3F A;  5A0W A;  5A0M B;  3R7P A;  1BP7 A;  3E54 A;  4Z1X A;  3HYJ A;  2VBN B;  2VBJ A;  4UNB A;  3MXA A;  4UNC A;  3C0X A;  2XE0 A;  3KO2 A;  2VS7 A;  4AQX A;  5A0M A;  5E67 A;  3OOL A;  2VBN A;  2VBO B;  4AAG A;  4AQU A;  2O7M A;  4AAE A;  1T9J A;  1DQ3 A;  1U0D A;  2VBO A;  1JVA A;  2VS8 A;  1EF0 A;  5AK9 A;  3MXB B;  1G9Z A;  2DCH X;  1M5X A;  2CW8 A;  1P8K Z;  5A77 A;  3C0W A;  4UN8 A;  5AKM A;  1MOW A;  4UN7 A;  5AKN A;  4LOX A;  4UN9 A;  1N3E A;  2I3P A; 
#chains in the Genus database with same CATH topology
 1AF5 A;  4UNA A;  1U0C A;  5E5O A;  4UN8 G;  1VDE A;  2I3Q A;  5A78 A;  3MIS A;  4D6O A;  5E5S A;  4LQ0 A;  2VBL B;  4AAD A;  4UN9 G;  1LWS A;  1T9I A;  1UM2 A;  3MX9 A;  3MIP A;  4EFJ A;  1DFA A;  3MXB A;  3HYI A;  5AKF A;  1R7M A;  2EX5 A;  2FLD A;  4AAB A;  4Z20 A;  3EH8 A;  4UT0 A;  4D6N A;  2AB5 A;  4UN7 G;  3QQY A;  4Z1Z A;  1G9Y A;  5A74 A;  1B24 A;  5A72 A;  3FD2 A;  4YIS A;  4YIT A;  3OOR A;  2CW7 A;  5E63 A;  2VBL A;  2VBJ B;  1LWT A;  4AAF A;  2QOJ Z;  4YHX A;  2XE0 B;  3UVF A;  1N3F A;  5A0W A;  5A0M B;  3R7P A;  1BP7 A;  3E54 A;  4Z1X A;  3HYJ A;  2VBN B;  2VBJ A;  4UNB A;  3MXA A;  4UNC A;  3C0X A;  2XE0 A;  3KO2 A;  2VS7 A;  4AQX A;  5A0M A;  5E67 A;  3OOL A;  2VBN A;  2VBO B;  4AAG A;  4AQU A;  2O7M A;  4AAE A;  1T9J A;  1DQ3 A;  1U0D A;  2VBO A;  1JVA A;  2VS8 A;  4KZS A;  1EF0 A;  5AK9 A;  3MXB B;  1G9Z A;  2F4L A;  2DCH X;  1M5X A;  2CW8 A;  1P8K Z;  5A77 A;  3C0W A;  4UN8 A;  5AKM A;  1MOW A;  4UN7 A;  5AKN A;  4LOX A;  4UN9 A;  1N3E A;  2I3P A; 
#chains in the Genus database with same CATH homology
 1AF5 A;  4UNA A;  1U0C A;  5E5O A;  4UN8 G;  1VDE A;  2I3Q A;  5A78 A;  3MIS A;  4D6O A;  5E5S A;  4LQ0 A;  2VBL B;  4AAD A;  4UN9 G;  1LWS A;  1T9I A;  1UM2 A;  3MX9 A;  3MIP A;  4EFJ A;  1DFA A;  3MXB A;  3HYI A;  5AKF A;  1R7M A;  2EX5 A;  2FLD A;  4AAB A;  4Z20 A;  3EH8 A;  4UT0 A;  4D6N A;  2AB5 A;  4UN7 G;  3QQY A;  4Z1Z A;  1G9Y A;  5A74 A;  1B24 A;  5A72 A;  3FD2 A;  4YIS A;  4YIT A;  3OOR A;  2CW7 A;  5E63 A;  2VBL A;  2VBJ B;  1LWT A;  4AAF A;  2QOJ Z;  4YHX A;  2XE0 B;  3UVF A;  1N3F A;  5A0W A;  5A0M B;  3R7P A;  1BP7 A;  3E54 A;  4Z1X A;  3HYJ A;  2VBN B;  2VBJ A;  4UNB A;  3MXA A;  4UNC A;  3C0X A;  2XE0 A;  3KO2 A;  2VS7 A;  4AQX A;  5A0M A;  5E67 A;  3OOL A;  2VBN A;  2VBO B;  4AAG A;  4AQU A;  2O7M A;  4AAE A;  1T9J A;  1DQ3 A;  1U0D A;  2VBO A;  1JVA A;  2VS8 A;  1EF0 A;  5AK9 A;  3MXB B;  1G9Z A;  2DCH X;  1M5X A;  2CW8 A;  1P8K Z;  5A77 A;  3C0W A;  4UN8 A;  5AKM A;  1MOW A;  4UN7 A;  5AKN A;  4LOX A;  4UN9 A;  1N3E A;  2I3P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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