2VDII

Crystal structure of chlamydomonas reinhardtii rubisco with a large- subunit c192s mutation
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
139
structure length
139
Chain Sequence
MVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
publication title Structural and Functional Consequences of the Replacement of Proximal Residues Cys-172 and Cys-192 in the Large Subunit of Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase from Chlamydomonas Reinhardtii
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 29
structure length 139
sequence length 139
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2007-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 2vdiI00
3RUBS 1SVDM 1UZHC 4F0MB 1UW9C 1IR1S 2VDHI 1WDDS 1RLCS 1AUSS 4RUBS 8RUCI 1IWAB 1BWVS 2VDII 2V69I 1RLDS 3AXMS 1EJ7S 2V67I 1RCXC 1RXOC 1RBOC 1UZDC 2V6AI 2V63I 1AA1C 2YBVB 1UPMC 1BXNI 1UPPI 1RSCI 4HHHS 3ZXWB 4F0HB 1RBLI 2V68I 1IR21 1UWAC 1RCOC 4MKVS 4F0KB 1GK8I 3AXKS
chains in the Genus database with same CATH superfamily
3RUBS 3TG8A 3UMYA 1DWUA 3ZQJA 1SVDM 1ZHOA 1U63A 1UZHC 5DM60 4F0MB 1UW9C 1IR1S 4QGBA 2VDHI 1WDDS 1RLCS 1AUSS 4RUBS 8RUCI 1IWAB 1BWVS 2FHZA 2V69I 1RLDS 2DFXI 2VDII 3AXMS 3FPNA 4REOA 1EJ7S 2V67I 4DFCB 3U56A 3U4MA 4QG3A 1RCXC 1RXOC 1RBOC 1UZDC 1I2AA 2V6AI 5DM70 2V63I 1MZPA 1AA1C 2HW8A 4QVIA 2YBVB 1UPMC 1BXNI 1UPPI 1RSCI 4HHHS 3QOYA 3ZXWB 1RBLI 4F0HB 4F9TA 2V68I 1IR21 1UWAC 1RCOC 4MKVS 4F0KB 1AD2A 1CJSA 1GK8I 4LQ4A 3AXKS
chains in the Genus database with same CATH topology
3RUBS 1SVDM 1UZHC 4F0MB 1UW9C 1IR1S 2VDHI 1WDDS 1RLCS 1AUSS 4RUBS 8RUCI 1IWAB 1BWVS 2VDII 2V69I 1RLDS 3AXMS 1EJ7S 2V67I 1RCXC 1RXOC 1RBOC 1UZDC 2V6AI 2V63I 1AA1C 2YBVB 1UPMC 1BXNI 1UPPI 1RSCI 4HHHS 3ZXWB 4F0HB 1RBLI 2V68I 1IR21 1UWAC 1RCOC 4MKVS 4F0KB 1GK8I 3AXKS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RUB S;  1SVD M;  1UZH C;  4F0M B;  1UW9 C;  1IR1 S;  2VDH I;  1WDD S;  1RLC S;  1AUS S;  4RUB S;  8RUC I;  1IWA B;  1BWV S;  2VDI I;  2V69 I;  1RLD S;  3AXM S;  1EJ7 S;  2V67 I;  1RCX C;  1RXO C;  1RBO C;  1UZD C;  2V6A I;  2V63 I;  1AA1 C;  2YBV B;  1UPM C;  1BXN I;  1UPP I;  1RSC I;  4HHH S;  3ZXW B;  4F0H B;  1RBL I;  2V68 I;  1IR2 1;  1UWA C;  1RCO C;  4MKV S;  4F0K B;  1GK8 I;  3AXK S; 
#chains in the Genus database with same CATH topology
 3RUB S;  3TG8 A;  3UMY A;  1DWU A;  3ZQJ A;  1SVD M;  1ZHO A;  1U63 A;  1UZH C;  5DM6 0;  4F0M B;  1UW9 C;  1IR1 S;  4QGB A;  2VDH I;  1WDD S;  1RLC S;  1AUS S;  4RUB S;  8RUC I;  1IWA B;  1BWV S;  2FHZ A;  2V69 I;  1RLD S;  2DFX I;  2VDI I;  3AXM S;  3FPN A;  4REO A;  1EJ7 S;  2V67 I;  4DFC B;  3U56 A;  3U4M A;  4QG3 A;  1RCX C;  1RXO C;  1RBO C;  1UZD C;  1I2A A;  2V6A I;  5DM7 0;  2V63 I;  1MZP A;  1AA1 C;  2HW8 A;  4QVI A;  2YBV B;  1UPM C;  1BXN I;  1UPP I;  1RSC I;  4HHH S;  3QOY A;  3ZXW B;  1RBL I;  4F0H B;  4F9T A;  2V68 I;  1IR2 1;  1UWA C;  1RCO C;  4MKV S;  4F0K B;  1AD2 A;  1CJS A;  1GK8 I;  4LQ4 A;  3AXK S; 
#chains in the Genus database with same CATH homology
 3RUB S;  1SVD M;  1UZH C;  4F0M B;  1UW9 C;  1IR1 S;  2VDH I;  1WDD S;  1RLC S;  1AUS S;  4RUB S;  8RUC I;  1IWA B;  1BWV S;  2VDI I;  2V69 I;  1RLD S;  3AXM S;  1EJ7 S;  2V67 I;  1RCX C;  1RXO C;  1RBO C;  1UZD C;  2V6A I;  2V63 I;  1AA1 C;  2YBV B;  1UPM C;  1BXN I;  1UPP I;  1RSC I;  4HHH S;  3ZXW B;  4F0H B;  1RBL I;  2V68 I;  1IR2 1;  1UWA C;  1RCO C;  4MKV S;  4F0K B;  1GK8 I;  3AXK S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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