2VDTA

Crystallographic structure of levansucrase from bacillus subtilis mutant s164a
Total Genus 95
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
439
structure length
439
Chain Sequence
QKPYKETYGISHITRHDMLQIPEQQKNEKYQVPEFDSSTIKNISSAKGLDVWDSWPLQNADGTVANYHGYHIVFALAGDPKNADDTSIYMFYQKVGETSIDSWKNAGRVFKDSDKFDANDSILKDQTQEWAGSATFTSDGKIRLFYTDFSGKHYGKQTLTTAQVNVSASDSSLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSGDNHTLRDPHYVEDKGHKYLVFEANTGTEDGYQGEESLFNKAYYGKSTSFFRQESQKLLQSDKKRTAELANGALGMIELNDDYTLKKVMKPLIASNTVTDEIERANVFKMNGKWYLFTDSRGSKMTIDGITSNDIYMLGYVSNSLTGPYKPLNKTGLVLKMDLDPNDVTFTYSHFAVPQAKGNNVVITSYMTNRGFYADKQSTFAPSFLLNIKGKKTSVVKDSILEQGQLTVN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords LEVANSUCRASE
publication title Selected Mutations in Bacillus Subtilis Levansucrase Semi-Conserved Regions Affecting its Biochemical Properties
pubmed doi rcsb
source organism Bacillus subtilis
total genus 95
structure length 439
sequence length 439
ec nomenclature ec 2.4.1.10: Levansucrase.
pdb deposition date 2007-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02435 Glyco_hydro_68 Levansucrase/Invertase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 2vdtA01
5AY9A 2X8SA 4ONZA 2OXBA 3LIHA 3LV4A 2YFRA 4UDIA 3LDRA 3VSZA 3P2NA 5A7VB 1VKDA 4KCBA 3C7EA 3R4ZA 5FKBA 5A7VA 1UV4A 4O8OA 5GLPA 3OM6A 3WN1A 3C7FA 3UGGA 3WN2A 3OM5A 1PT2A 4UDGA 2EXIA 3PIGA 5C0PA 4N2RA 3VT1A 4AK7A 3ZXJA 5JOXA 3VSFA 3D61A 2VDTA 1Y4WA 2XQRA 5B6SA 5GLRA 5FK7A 3D5ZA 5A8CA 3D5YA 4PVAA 3WPUA 3AKHA 5FIXA 2QQWA 3WATA 3UGFA 2ADDA 3BYLA 1YIFA 3LIGA 3U75A 3KSTA 3U14A 4N4BA 3ZXLA 1GYEB 3C7GA 3QC2A 4UDJA 3AKFA 3C7OA 4N1IA 2AC1A 1GYDB 1W18A 3KF3A 5FMDA 4UDKE 3C7HA 5FK8A 1Y9MA 1W2TA 3ZXKA 5JOZA 3VSRA 4KC7A 4KCAA 4FFHA 1OYGA 3WMZA 3LFIA 3LF7A 3TAWA 4U6BA 5GLNA 1Y7BA 3QEEA 5GLKA 4EQVA 5JOWA 3PIJA 3C2UA 3QZ4A 5GLLA 3BYJA 3SC7X 3OM4A 5AYCA 3VSSA 5GLQA 4FFGA 4COTA 3KF5A 3BYNA 2YFSA 2B4WA 4PVIA 1UYPA 2EXHA 3NQHA 3WPYA 1Y9GA 2AEYA 3QEDA 2EXJA 4FFIA 5ANNA 3UGHA 3WASA 2AEZA 2QQVA 4U6DA 3OM7A 5B6TA 3LDKA 4N2ZA 5A8DA 3VT2A 5AYEA 3R67A 3AKGA 5GLOA 4O8NA 3R4YA 5GLMA 3QEFA 3WPZA 5JOYA 3WMYA 4AK6A 1WL7A 3CU9A 3D60A 4QQSA 5FMBA 4D47A 2X8TA 2YFTA 3BYKA 5AYDA 3OM2A 2ADEA 5FKCA 4O8PA 1GYHA 4FFFA 3WPVA 1YRZA 4KC8A 3WN0A 3WAUA 2EXKA 1YI7A 3LEMA 4AK5A 2QQUA 4MLGA 3RWKX 1ST8A 2X8FA 4KMIA 4UDKA 5FLWA 5FMCA 4NOVA 3VT0A 3K1UA 3AKIA
chains in the Genus database with same CATH superfamily
5AY9A 2X8SA 4ONZA 2OXBA 3LIHA 3LV4A 2YFRA 4UDIA 3LDRA 3VSZA 3P2NA 5A7VB 1VKDA 4KCBA 3C7EA 3R4ZA 5FKBA 5A7VA 1UV4A 4O8OA 5GLPA 3OM6A 3WN1A 3C7FA 3UGGA 3WN2A 3OM5A 1PT2A 4UDGA 2EXIA 3PIGA 5C0PA 4N2RA 3VT1A 4AK7A 3ZXJA 5JOXA 3VSFA 3D61A 2VDTA 1Y4WA 2XQRA 5B6SA 5GLRA 5FK7A 3D5ZA 5A8CA 3D5YA 4PVAA 3WPUA 3AKHA 5FIXA 2QQWA 3WATA 3UGFA 2ADDA 3BYLA 1YIFA 3LIGA 3U75A 3KSTA 3U14A 4N4BA 3ZXLA 1GYEB 3C7GA 3QC2A 4UDJA 3AKFA 3C7OA 4N1IA 2AC1A 1GYDB 1W18A 3KF3A 5FMDA 4UDKE 5C2MA 3C7HA 5FK8A 1Y9MA 1W2TA 3ZXKA 5JOZA 3VSRA 4KC7A 4KCAA 4FFHA 1OYGA 3WMZA 3LFIA 3LF7A 3TAWA 4U6BA 5GLNA 1Y7BA 3QEEA 5GLKA 1TL2A 4EQVA 5JOWA 3PIJA 3C2UA 3QZ4A 5GLLA 3BYJA 3SC7X 3OM4A 5AYCA 3VSSA 5GLQA 4FFGA 4COTA 3KF5A 3BYNA 2YFSA 2B4WA 4PVIA 1UYPA 2EXHA 3NQHA 3WPYA 1Y9GA 2AEYA 3QEDA 2EXJA 4FFIA 5ANNA 3UGHA 3WASA 2AEZA 2QQVA 4U6DA 3OM7A 5B6TA 3LDKA 4N2ZA 5A8DA 3VT2A 5AYEA 3R67A 3AKGA 5GLOA 4O8NA 3R4YA 5GLMA 3QEFA 3WPZA 5JOYA 3WMYA 4AK6A 1WL7A 3CU9A 3D60A 4QQSA 5FMBA 4D47A 2X8TA 2YFTA 3BYKA 5AYDA 3OM2A 2ADEA 5FKCA 4O8PA 1GYHA 4FFFA 3WPVA 1YRZA 4KC8A 3WN0A 3WAUA 2EXKA 1YI7A 3LEMA 4AK5A 2QQUA 4MLGA 3RWKX 1ST8A 2X8FA 4KMIA 4UDKA 5FLWA 5FMCA 4NOVA 3VT0A 3K1UA 3AKIA
chains in the Genus database with same CATH topology
5AY9A 2X8SA 4ONZA 2OXBA 3LIHA 3LV4A 2YFRA 4UDIA 3LDRA 3VSZA 3P2NA 5A7VB 1VKDA 4KCBA 3C7EA 3R4ZA 5FKBA 5A7VA 1UV4A 4O8OA 5GLPA 3OM6A 3WN1A 3C7FA 3UGGA 3WN2A 3OM5A 1PT2A 4UDGA 2EXIA 3PIGA 5C0PA 4N2RA 3VT1A 4AK7A 3ZXJA 5JOXA 3VSFA 3D61A 2VDTA 1Y4WA 2XQRA 5B6SA 5GLRA 5FK7A 3D5ZA 5A8CA 3D5YA 4PVAA 3WPUA 3AKHA 5FIXA 2QQWA 3WATA 3UGFA 2ADDA 3BYLA 1YIFA 3LIGA 3U75A 3KSTA 3U14A 4N4BA 3ZXLA 1GYEB 3C7GA 3QC2A 4UDJA 3AKFA 3C7OA 4N1IA 2AC1A 1GYDB 1W18A 3KF3A 5FMDA 4UDKE 3C7HA 5FK8A 1Y9MA 1W2TA 3ZXKA 5JOZA 3VSRA 4KC7A 4KCAA 4FFHA 1OYGA 3WMZA 3LFIA 3LF7A 3TAWA 4U6BA 5GLNA 1Y7BA 3QEEA 5GLKA 4EQVA 5JOWA 3PIJA 3C2UA 3QZ4A 5GLLA 3BYJA 3SC7X 3OM4A 5AYCA 3VSSA 5GLQA 4FFGA 4COTA 3KF5A 3BYNA 2YFSA 2B4WA 4PVIA 1UYPA 2EXHA 3NQHA 3WPYA 1Y9GA 2AEYA 3QEDA 2EXJA 4FFIA 5ANNA 3UGHA 3WASA 2AEZA 2QQVA 4U6DA 3OM7A 5B6TA 3LDKA 4N2ZA 5A8DA 3VT2A 5AYEA 3R67A 3AKGA 5GLOA 4O8NA 3R4YA 5GLMA 3QEFA 3WPZA 5JOYA 3WMYA 4AK6A 1WL7A 3CU9A 3D60A 4QQSA 5FMBA 4D47A 2X8TA 2YFTA 3BYKA 5AYDA 3OM2A 2ADEA 5FKCA 4O8PA 1GYHA 4FFFA 3WPVA 1YRZA 4KC8A 3WN0A 3WAUA 2EXKA 1YI7A 3LEMA 4AK5A 2QQUA 4MLGA 3RWKX 1ST8A 2X8FA 4KMIA 4UDKA 5FLWA 5FMCA 4NOVA 3VT0A 3K1UA 3AKIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AY9 A;  2X8S A;  4ONZ A;  2OXB A;  3LIH A;  3LV4 A;  2YFR A;  4UDI A;  3LDR A;  3VSZ A;  3P2N A;  5A7V B;  1VKD A;  4KCB A;  3C7E A;  3R4Z A;  5FKB A;  5A7V A;  1UV4 A;  4O8O A;  5GLP A;  3OM6 A;  3WN1 A;  3C7F A;  3UGG A;  3WN2 A;  3OM5 A;  1PT2 A;  4UDG A;  2EXI A;  3PIG A;  5C0P A;  4N2R A;  3VT1 A;  4AK7 A;  3ZXJ A;  5JOX A;  3VSF A;  3D61 A;  2VDT A;  1Y4W A;  2XQR A;  5B6S A;  5GLR A;  5FK7 A;  3D5Z A;  5A8C A;  3D5Y A;  4PVA A;  3WPU A;  3AKH A;  5FIX A;  2QQW A;  3WAT A;  3UGF A;  2ADD A;  3BYL A;  1YIF A;  3LIG A;  3U75 A;  3KST A;  3U14 A;  4N4B A;  3ZXL A;  1GYE B;  3C7G A;  3QC2 A;  4UDJ A;  3AKF A;  3C7O A;  4N1I A;  2AC1 A;  1GYD B;  1W18 A;  3KF3 A;  5FMD A;  4UDK E;  3C7H A;  5FK8 A;  1Y9M A;  1W2T A;  3ZXK A;  5JOZ A;  3VSR A;  4KC7 A;  4KCA A;  4FFH A;  1OYG A;  3WMZ A;  3LFI A;  3LF7 A;  3TAW A;  4U6B A;  5GLN A;  1Y7B A;  3QEE A;  5GLK A;  4EQV A;  5JOW A;  3PIJ A;  3C2U A;  3QZ4 A;  5GLL A;  3BYJ A;  3SC7 X;  3OM4 A;  5AYC A;  3VSS A;  5GLQ A;  4FFG A;  4COT A;  3KF5 A;  3BYN A;  2YFS A;  2B4W A;  4PVI A;  1UYP A;  2EXH A;  3NQH A;  3WPY A;  1Y9G A;  2AEY A;  3QED A;  2EXJ A;  4FFI A;  5ANN A;  3UGH A;  3WAS A;  2AEZ A;  2QQV A;  4U6D A;  3OM7 A;  5B6T A;  3LDK A;  4N2Z A;  5A8D A;  3VT2 A;  5AYE A;  3R67 A;  3AKG A;  5GLO A;  4O8N A;  3R4Y A;  5GLM A;  3QEF A;  3WPZ A;  5JOY A;  3WMY A;  4AK6 A;  1WL7 A;  3CU9 A;  3D60 A;  4QQS A;  5FMB A;  4D47 A;  2X8T A;  2YFT A;  3BYK A;  5AYD A;  3OM2 A;  2ADE A;  5FKC A;  4O8P A;  1GYH A;  4FFF A;  3WPV A;  1YRZ A;  4KC8 A;  3WN0 A;  3WAU A;  2EXK A;  1YI7 A;  3LEM A;  4AK5 A;  2QQU A;  4MLG A;  3RWK X;  1ST8 A;  2X8F A;  4KMI A;  4UDK A;  5FLW A;  5FMC A;  4NOV A;  3VT0 A;  3K1U A;  3AKI A; 
#chains in the Genus database with same CATH topology
 5AY9 A;  2X8S A;  4ONZ A;  2OXB A;  3LIH A;  3LV4 A;  2YFR A;  4UDI A;  3LDR A;  3VSZ A;  3P2N A;  5A7V B;  1VKD A;  4KCB A;  3C7E A;  3R4Z A;  5FKB A;  5A7V A;  1UV4 A;  4O8O A;  5GLP A;  3OM6 A;  3WN1 A;  3C7F A;  3UGG A;  3WN2 A;  3OM5 A;  1PT2 A;  4UDG A;  2EXI A;  3PIG A;  5C0P A;  4N2R A;  3VT1 A;  4AK7 A;  3ZXJ A;  5JOX A;  3VSF A;  3D61 A;  2VDT A;  1Y4W A;  2XQR A;  5B6S A;  5GLR A;  5FK7 A;  3D5Z A;  5A8C A;  3D5Y A;  4PVA A;  3WPU A;  3AKH A;  5FIX A;  2QQW A;  3WAT A;  3UGF A;  2ADD A;  3BYL A;  1YIF A;  3LIG A;  3U75 A;  3KST A;  3U14 A;  4N4B A;  3ZXL A;  1GYE B;  3C7G A;  3QC2 A;  4UDJ A;  3AKF A;  3C7O A;  4N1I A;  2AC1 A;  1GYD B;  1W18 A;  3KF3 A;  5FMD A;  4UDK E;  5C2M A;  3C7H A;  5FK8 A;  1Y9M A;  1W2T A;  3ZXK A;  5JOZ A;  3VSR A;  4KC7 A;  4KCA A;  4FFH A;  1OYG A;  3WMZ A;  3LFI A;  3LF7 A;  3TAW A;  4U6B A;  5GLN A;  1Y7B A;  3QEE A;  5GLK A;  1TL2 A;  4EQV A;  5JOW A;  3PIJ A;  3C2U A;  3QZ4 A;  5GLL A;  3BYJ A;  3SC7 X;  3OM4 A;  5AYC A;  3VSS A;  5GLQ A;  4FFG A;  4COT A;  3KF5 A;  3BYN A;  2YFS A;  2B4W A;  4PVI A;  1UYP A;  2EXH A;  3NQH A;  3WPY A;  1Y9G A;  2AEY A;  3QED A;  2EXJ A;  4FFI A;  5ANN A;  3UGH A;  3WAS A;  2AEZ A;  2QQV A;  4U6D A;  3OM7 A;  5B6T A;  3LDK A;  4N2Z A;  5A8D A;  3VT2 A;  5AYE A;  3R67 A;  3AKG A;  5GLO A;  4O8N A;  3R4Y A;  5GLM A;  3QEF A;  3WPZ A;  5JOY A;  3WMY A;  4AK6 A;  1WL7 A;  3CU9 A;  3D60 A;  4QQS A;  5FMB A;  4D47 A;  2X8T A;  2YFT A;  3BYK A;  5AYD A;  3OM2 A;  2ADE A;  5FKC A;  4O8P A;  1GYH A;  4FFF A;  3WPV A;  1YRZ A;  4KC8 A;  3WN0 A;  3WAU A;  2EXK A;  1YI7 A;  3LEM A;  4AK5 A;  2QQU A;  4MLG A;  3RWK X;  1ST8 A;  2X8F A;  4KMI A;  4UDK A;  5FLW A;  5FMC A;  4NOV A;  3VT0 A;  3K1U A;  3AKI A; 
#chains in the Genus database with same CATH homology
 5AY9 A;  2X8S A;  4ONZ A;  2OXB A;  3LIH A;  3LV4 A;  2YFR A;  4UDI A;  3LDR A;  3VSZ A;  3P2N A;  5A7V B;  1VKD A;  4KCB A;  3C7E A;  3R4Z A;  5FKB A;  5A7V A;  1UV4 A;  4O8O A;  5GLP A;  3OM6 A;  3WN1 A;  3C7F A;  3UGG A;  3WN2 A;  3OM5 A;  1PT2 A;  4UDG A;  2EXI A;  3PIG A;  5C0P A;  4N2R A;  3VT1 A;  4AK7 A;  3ZXJ A;  5JOX A;  3VSF A;  3D61 A;  2VDT A;  1Y4W A;  2XQR A;  5B6S A;  5GLR A;  5FK7 A;  3D5Z A;  5A8C A;  3D5Y A;  4PVA A;  3WPU A;  3AKH A;  5FIX A;  2QQW A;  3WAT A;  3UGF A;  2ADD A;  3BYL A;  1YIF A;  3LIG A;  3U75 A;  3KST A;  3U14 A;  4N4B A;  3ZXL A;  1GYE B;  3C7G A;  3QC2 A;  4UDJ A;  3AKF A;  3C7O A;  4N1I A;  2AC1 A;  1GYD B;  1W18 A;  3KF3 A;  5FMD A;  4UDK E;  3C7H A;  5FK8 A;  1Y9M A;  1W2T A;  3ZXK A;  5JOZ A;  3VSR A;  4KC7 A;  4KCA A;  4FFH A;  1OYG A;  3WMZ A;  3LFI A;  3LF7 A;  3TAW A;  4U6B A;  5GLN A;  1Y7B A;  3QEE A;  5GLK A;  4EQV A;  5JOW A;  3PIJ A;  3C2U A;  3QZ4 A;  5GLL A;  3BYJ A;  3SC7 X;  3OM4 A;  5AYC A;  3VSS A;  5GLQ A;  4FFG A;  4COT A;  3KF5 A;  3BYN A;  2YFS A;  2B4W A;  4PVI A;  1UYP A;  2EXH A;  3NQH A;  3WPY A;  1Y9G A;  2AEY A;  3QED A;  2EXJ A;  4FFI A;  5ANN A;  3UGH A;  3WAS A;  2AEZ A;  2QQV A;  4U6D A;  3OM7 A;  5B6T A;  3LDK A;  4N2Z A;  5A8D A;  3VT2 A;  5AYE A;  3R67 A;  3AKG A;  5GLO A;  4O8N A;  3R4Y A;  5GLM A;  3QEF A;  3WPZ A;  5JOY A;  3WMY A;  4AK6 A;  1WL7 A;  3CU9 A;  3D60 A;  4QQS A;  5FMB A;  4D47 A;  2X8T A;  2YFT A;  3BYK A;  5AYD A;  3OM2 A;  2ADE A;  5FKC A;  4O8P A;  1GYH A;  4FFF A;  3WPV A;  1YRZ A;  4KC8 A;  3WN0 A;  3WAU A;  2EXK A;  1YI7 A;  3LEM A;  4AK5 A;  2QQU A;  4MLG A;  3RWK X;  1ST8 A;  2X8F A;  4KMI A;  4UDK A;  5FLW A;  5FMC A;  4NOV A;  3VT0 A;  3K1U A;  3AKI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...