2VHHA

Crystal structure of a pyrimidine degrading enzyme from drosophila melanogaster
Total Genus 112
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
381
structure length
345
Chain Sequence
LKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLYAESFKKASEHGFKPQIIKET
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The Crystal Structure of Beta-Alanine Synthase from Drosophila Melanogaster Reveals a Homooctameric Helical Turn-Like Assembly.
pubmed doi rcsb
source organism Drosophila melanogaster
molecule tags Hydrolase
molecule keywords CG3027-PA
total genus 112
structure length 345
sequence length 381
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.6: Beta-ureidopropionase.
pdb deposition date 2007-11-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 2vhhA00
3SDBA 3WUYA 4IZSA 3ILVA 2VHIA 1FO6A 5JQNA 2GGKA 5H8KA 2W1VA 4IZUA 1UF7A 4GYLA 4IZTA 2DYUA 1EMSA 2GGLA 5KHAA 3KLCA 4CYGA 3SYTA 2VHHA 4H5UA 3SEQA 3HKXA 3KI8A 2DYVA 2E2LA 3SEZA 1ERZA 1UF5A 3IW3A 1UF8A 4GYNA 4CYFA 3IVZA 2E11A 5H8LA 2UXYA 2PLQA 5H8JA 4HGDA 4HG3A 4KZFA 1F89A 1J31A 4CYYA 2E2KA 4IZVA 3P8KA 3DLAA 4IZWA 3N05A 4LF0A 3SZGA 5H8IA 1UF4A 4F4HA 4HG5A
chains in the Genus database with same CATH superfamily
3SDBA 3WUYA 4IZSA 3ILVA 2VHIA 1FO6A 5JQNA 2GGKA 5H8KA 2W1VA 4IZUA 1UF7A 4GYLA 4IZTA 2DYUA 1EMSA 2GGLA 5KHAA 3KLCA 4CYGA 3SYTA 2VHHA 4H5UA 3SEQA 3HKXA 3KI8A 2DYVA 2E2LA 3SEZA 1ERZA 1UF5A 3IW3A 1UF8A 4GYNA 4CYFA 3IVZA 2E11A 5H8LA 2UXYA 2PLQA 5H8JA 4HGDA 4HG3A 4KZFA 1F89A 1J31A 4CYYA 2E2KA 4IZVA 3P8KA 3DLAA 4IZWA 3N05A 4LF0A 3SZGA 5H8IA 1UF4A 4F4HA 4HG5A
chains in the Genus database with same CATH topology
3SDBA 3WUYA 4IZSA 3ILVA 2VHIA 1FO6A 5JQNA 2GGKA 5H8KA 2W1VA 4IZUA 1UF7A 4GYLA 4IZTA 2DYUA 1EMSA 2GGLA 5KHAA 3KLCA 4CYGA 3SYTA 2VHHA 4H5UA 3SEQA 3HKXA 3KI8A 2DYVA 2E2LA 3SEZA 1ERZA 1UF5A 3IW3A 1UF8A 4GYNA 4CYFA 3IVZA 2E11A 5H8LA 2UXYA 2PLQA 5H8JA 4HGDA 4HG3A 4KZFA 1F89A 1J31A 4CYYA 2E2KA 4IZVA 3P8KA 3DLAA 4IZWA 3N05A 4LF0A 3SZGA 5H8IA 1UF4A 4F4HA 4HG5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SDB A;  3WUY A;  4IZS A;  3ILV A;  2VHI A;  1FO6 A;  5JQN A;  2GGK A;  5H8K A;  2W1V A;  4IZU A;  1UF7 A;  4GYL A;  4IZT A;  2DYU A;  1EMS A;  2GGL A;  5KHA A;  3KLC A;  4CYG A;  3SYT A;  2VHH A;  4H5U A;  3SEQ A;  3HKX A;  3KI8 A;  2DYV A;  2E2L A;  3SEZ A;  1ERZ A;  1UF5 A;  3IW3 A;  1UF8 A;  4GYN A;  4CYF A;  3IVZ A;  2E11 A;  5H8L A;  2UXY A;  2PLQ A;  5H8J A;  4HGD A;  4HG3 A;  4KZF A;  1F89 A;  1J31 A;  4CYY A;  2E2K A;  4IZV A;  3P8K A;  3DLA A;  4IZW A;  3N05 A;  4LF0 A;  3SZG A;  5H8I A;  1UF4 A;  4F4H A;  4HG5 A; 
#chains in the Genus database with same CATH topology
 3SDB A;  3WUY A;  4IZS A;  3ILV A;  2VHI A;  1FO6 A;  5JQN A;  2GGK A;  5H8K A;  2W1V A;  4IZU A;  1UF7 A;  4GYL A;  4IZT A;  2DYU A;  1EMS A;  2GGL A;  5KHA A;  3KLC A;  4CYG A;  3SYT A;  2VHH A;  4H5U A;  3SEQ A;  3HKX A;  3KI8 A;  2DYV A;  2E2L A;  3SEZ A;  1ERZ A;  1UF5 A;  3IW3 A;  1UF8 A;  4GYN A;  4CYF A;  3IVZ A;  2E11 A;  5H8L A;  2UXY A;  2PLQ A;  5H8J A;  4HGD A;  4HG3 A;  4KZF A;  1F89 A;  1J31 A;  4CYY A;  2E2K A;  4IZV A;  3P8K A;  3DLA A;  4IZW A;  3N05 A;  4LF0 A;  3SZG A;  5H8I A;  1UF4 A;  4F4H A;  4HG5 A; 
#chains in the Genus database with same CATH homology
 3SDB A;  3WUY A;  4IZS A;  3ILV A;  2VHI A;  1FO6 A;  5JQN A;  2GGK A;  5H8K A;  2W1V A;  4IZU A;  1UF7 A;  4GYL A;  4IZT A;  2DYU A;  1EMS A;  2GGL A;  5KHA A;  3KLC A;  4CYG A;  3SYT A;  2VHH A;  4H5U A;  3SEQ A;  3HKX A;  3KI8 A;  2DYV A;  2E2L A;  3SEZ A;  1ERZ A;  1UF5 A;  3IW3 A;  1UF8 A;  4GYN A;  4CYF A;  3IVZ A;  2E11 A;  5H8L A;  2UXY A;  2PLQ A;  5H8J A;  4HGD A;  4HG3 A;  4KZF A;  1F89 A;  1J31 A;  4CYY A;  2E2K A;  4IZV A;  3P8K A;  3DLA A;  4IZW A;  3N05 A;  4LF0 A;  3SZG A;  5H8I A;  1UF4 A;  4F4H A;  4HG5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...