2VIKA

Refined structure of the actin-severing domain villin 14t, determined by solution nmr, minimized average structure
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
126
structure length
126
Chain Sequence
VELSKKVTGKLDKTTPGIQIWRIENMEMVPVPTKSYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGGVASGMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin-binding protein
molecule keywords VILLIN 14T
publication title Refined structure of villin 14T and a detailed comparison with other actin-severing domains.
pubmed rcsb
source organism Gallus gallus
total genus 18
structure length 126
sequence length 126
ec nomenclature
pdb deposition date 1997-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2vikA00
1KCQA 3A5MS 3CI5G 1NMDG 2XF1A 1V6FA 1P8ZG 2NUPA 2XFAA 1M4JA 4Z94G 3EGDB 3EG9A 2LJ8A 1VKKA 3EH2A 3FG7A 1AHQA 2I2QA 1PCXA 2L72A 1WNJA 5KYWB 4BEX1 2MP4A 3DAWB 2FF3A 5HVKD 1CFYA 4PKGG 5KYNA 4LIZA 1NM1G 1VFQA 2NUTA 1PD0A 5IVUA 1D4XG 1SVRA 1C0FS 1M2VB 5L6WC 3FFKA 1T44G 3A5LS 3A5OS 1ESVS 1YAGG 2LLFA 3CJCG 3CJBG 1T3YA 1NPHA 2KVKA 1DEJS 1C0GS 1MDUA 1COFA 3A5NS 5HVKB 1T2LA 1F7SA 2D8BA 1QPVA 2W0IA 2NUPB 1NLVG 5KYYA 1JHWA 3EG9B 3L50A 2VILA 1T3XA 3Q2BA 2FH2A 1AK7A 2VACA 1H1VG 3EGXA 2NUTB 5FAEA 1Q8GA 2FH1A 5KYXA 1P8XA 4S10C 4KEEA 2FGHA 1TVJA 3TU5B 5DD2A 5KYUA 1TMWA 3EH1A 1HQZ1 4JD2H 3EFOA 2VIKA 5A1MA 1X67A 1PD1A 4PKHB 4CBUG 1RGIG 5KYYB 1UDMA 1WM4A 1J72A 5FAFA 4KEFA 3EGDA 4CBXG 2MV2A 1SVQA 4PKIG 5KYWA 1D0NA 2MOTA 1CNUA 3EGXB 1EQYS 4KEDA 2FH4A 3CIPG 1WFSA 2HD7A 5KYXB 1Q8XA 2FH3A 1SVYA 1YVNG 2LXXA 1M2VA 1M2OA 3FFNA 2FF6G 1AK6A 3FG6A 4CBWG 5KYUB 3EFOB 2QTVA
chains in the Genus database with same CATH superfamily
1KCQA 3A5MS 3CI5G 1NMDG 2XF1A 1V6FA 1P8ZG 2NUPA 2XFAA 1M4JA 4Z94G 3EGDB 3EG9A 2LJ8A 1VKKA 3EH2A 3FG7A 1AHQA 2I2QA 1PCXA 2L72A 1WNJA 5KYWB 4BEX1 2MP4A 3DAWB 2FF3A 5HVKD 1CFYA 4PKGG 5KYNA 4LIZA 1NM1G 1VFQA 2NUTA 1PD0A 5IVUA 1D4XG 1SVRA 1C0FS 1M2VB 5L6WC 3FFKA 1T44G 3A5LS 3A5OS 1ESVS 1YAGG 2LLFA 3CJCG 3CJBG 1T3YA 1NPHA 2KVKA 1DEJS 1C0GS 1MDUA 1COFA 3A5NS 5HVKB 1T2LA 1F7SA 2D8BA 1QPVA 2W0IA 2NUPB 1NLVG 5KYYA 1JHWA 3EG9B 3L50A 2VILA 1T3XA 3Q2BA 2FH2A 1AK7A 2VACA 1H1VG 3EGXA 2NUTB 5FAEA 1Q8GA 2FH1A 5KYXA 1P8XA 4S10C 4KEEA 2FGHA 1TVJA 3TU5B 5DD2A 5KYUA 1TMWA 3EH1A 1HQZ1 4JD2H 3EFOA 2VIKA 5A1MA 1X67A 1PD1A 3DA7A 4PKHB 4CBUG 1RGIG 5KYYB 1UDMA 1WM4A 1J72A 5FAFA 4KEFA 3EGDA 4CBXG 2MV2A 1SVQA 4PKIG 5KYWA 1D0NA 2MOTA 1CNUA 3EGXB 1EQYS 4KEDA 2FH4A 3CIPG 1WFSA 2HD7A 5KYXB 1Q8XA 2FH3A 1SVYA 1YVNG 2LXXA 1M2VA 1M2OA 3FFNA 2FF6G 1AK6A 3FG6A 4CBWG 5KYUB 3EFOB 2QTVA
chains in the Genus database with same CATH topology
1KCQA 3A5MS 3CI5G 1NMDG 2XF1A 1V6FA 1P8ZG 2NUPA 2XFAA 1M4JA 4Z94G 3EGDB 3EG9A 2LJ8A 1VKKA 3EH2A 3FG7A 1AHQA 2I2QA 1PCXA 2L72A 1WNJA 5KYWB 4BEX1 2MP4A 3DAWB 2FF3A 5HVKD 1CFYA 4PKGG 5KYNA 4LIZA 1NM1G 1VFQA 2NUTA 1PD0A 5IVUA 1D4XG 1SVRA 1C0FS 1M2VB 5L6WC 3FFKA 1T44G 3A5LS 3A5OS 1ESVS 1YAGG 2LLFA 3CJCG 3CJBG 1T3YA 1NPHA 2KVKA 1DEJS 1C0GS 1MDUA 1COFA 3A5NS 5HVKB 1T2LA 1F7SA 2D8BA 1QPVA 2W0IA 2NUPB 1NLVG 5KYYA 1JHWA 3EG9B 3L50A 2VILA 1T3XA 3Q2BA 2FH2A 1AK7A 2VACA 1H1VG 3EGXA 2NUTB 5FAEA 1Q8GA 2FH1A 5KYXA 1P8XA 4S10C 4KEEA 2FGHA 1TVJA 3TU5B 5DD2A 5KYUA 1TMWA 3EH1A 1HQZ1 4JD2H 3EFOA 2VIKA 5A1MA 1X67A 1PD1A 3DA7A 4PKHB 4CBUG 1RGIG 5KYYB 1UDMA 1WM4A 1J72A 5FAFA 4KEFA 3EGDA 4CBXG 2MV2A 1SVQA 4PKIG 5KYWA 1D0NA 2MOTA 1CNUA 3EGXB 1EQYS 4KEDA 2FH4A 3CIPG 1WFSA 2HD7A 5KYXB 1Q8XA 2FH3A 1SVYA 1YVNG 2LXXA 1M2VA 1M2OA 3FFNA 2FF6G 1AK6A 3FG6A 4CBWG 5KYUB 3EFOB 2QTVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KCQ A;  3A5M S;  3CI5 G;  1NMD G;  2XF1 A;  1V6F A;  1P8Z G;  2NUP A;  2XFA A;  1M4J A;  4Z94 G;  3EGD B;  3EG9 A;  2LJ8 A;  1VKK A;  3EH2 A;  3FG7 A;  1AHQ A;  2I2Q A;  1PCX A;  2L72 A;  1WNJ A;  5KYW B;  4BEX 1;  2MP4 A;  3DAW B;  2FF3 A;  5HVK D;  1CFY A;  4PKG G;  5KYN A;  4LIZ A;  1NM1 G;  1VFQ A;  2NUT A;  1PD0 A;  5IVU A;  1D4X G;  1SVR A;  1C0F S;  1M2V B;  5L6W C;  3FFK A;  1T44 G;  3A5L S;  3A5O S;  1ESV S;  1YAG G;  2LLF A;  3CJC G;  3CJB G;  1T3Y A;  1NPH A;  2KVK A;  1DEJ S;  1C0G S;  1MDU A;  1COF A;  3A5N S;  5HVK B;  1T2L A;  1F7S A;  2D8B A;  1QPV A;  2W0I A;  2NUP B;  1NLV G;  5KYY A;  1JHW A;  3EG9 B;  3L50 A;  2VIL A;  1T3X A;  3Q2B A;  2FH2 A;  1AK7 A;  2VAC A;  1H1V G;  3EGX A;  2NUT B;  5FAE A;  1Q8G A;  2FH1 A;  5KYX A;  1P8X A;  4S10 C;  4KEE A;  2FGH A;  1TVJ A;  3TU5 B;  5DD2 A;  5KYU A;  1TMW A;  3EH1 A;  1HQZ 1;  4JD2 H;  3EFO A;  2VIK A;  5A1M A;  1X67 A;  1PD1 A;  4PKH B;  4CBU G;  1RGI G;  5KYY B;  1UDM A;  1WM4 A;  1J72 A;  5FAF A;  4KEF A;  3EGD A;  4CBX G;  2MV2 A;  1SVQ A;  4PKI G;  5KYW A;  1D0N A;  2MOT A;  1CNU A;  3EGX B;  1EQY S;  4KED A;  2FH4 A;  3CIP G;  1WFS A;  2HD7 A;  5KYX B;  1Q8X A;  2FH3 A;  1SVY A;  1YVN G;  2LXX A;  1M2V A;  1M2O A;  3FFN A;  2FF6 G;  1AK6 A;  3FG6 A;  4CBW G;  5KYU B;  3EFO B;  2QTV A; 
#chains in the Genus database with same CATH topology
 1KCQ A;  3A5M S;  3CI5 G;  1NMD G;  2XF1 A;  1V6F A;  1P8Z G;  2NUP A;  2XFA A;  1M4J A;  4Z94 G;  3EGD B;  3EG9 A;  2LJ8 A;  1VKK A;  3EH2 A;  3FG7 A;  1AHQ A;  2I2Q A;  1PCX A;  2L72 A;  1WNJ A;  5KYW B;  4BEX 1;  2MP4 A;  3DAW B;  2FF3 A;  5HVK D;  1CFY A;  4PKG G;  5KYN A;  4LIZ A;  1NM1 G;  1VFQ A;  2NUT A;  1PD0 A;  5IVU A;  1D4X G;  1SVR A;  1C0F S;  1M2V B;  5L6W C;  3FFK A;  1T44 G;  3A5L S;  3A5O S;  1ESV S;  1YAG G;  2LLF A;  3CJC G;  3CJB G;  1T3Y A;  1NPH A;  2KVK A;  1DEJ S;  1C0G S;  1MDU A;  1COF A;  3A5N S;  5HVK B;  1T2L A;  1F7S A;  2D8B A;  1QPV A;  2W0I A;  2NUP B;  1NLV G;  5KYY A;  1JHW A;  3EG9 B;  3L50 A;  2VIL A;  1T3X A;  3Q2B A;  2FH2 A;  1AK7 A;  2VAC A;  1H1V G;  3EGX A;  2NUT B;  5FAE A;  1Q8G A;  2FH1 A;  5KYX A;  1P8X A;  4S10 C;  4KEE A;  2FGH A;  1TVJ A;  3TU5 B;  5DD2 A;  5KYU A;  1TMW A;  3EH1 A;  1HQZ 1;  4JD2 H;  3EFO A;  2VIK A;  5A1M A;  1X67 A;  1PD1 A;  3DA7 A;  4PKH B;  4CBU G;  1RGI G;  5KYY B;  1UDM A;  1WM4 A;  1J72 A;  5FAF A;  4KEF A;  3EGD A;  4CBX G;  2MV2 A;  1SVQ A;  4PKI G;  5KYW A;  1D0N A;  2MOT A;  1CNU A;  3EGX B;  1EQY S;  4KED A;  2FH4 A;  3CIP G;  1WFS A;  2HD7 A;  5KYX B;  1Q8X A;  2FH3 A;  1SVY A;  1YVN G;  2LXX A;  1M2V A;  1M2O A;  3FFN A;  2FF6 G;  1AK6 A;  3FG6 A;  4CBW G;  5KYU B;  3EFO B;  2QTV A; 
#chains in the Genus database with same CATH homology
 1KCQ A;  3A5M S;  3CI5 G;  1NMD G;  2XF1 A;  1V6F A;  1P8Z G;  2NUP A;  2XFA A;  1M4J A;  4Z94 G;  3EGD B;  3EG9 A;  2LJ8 A;  1VKK A;  3EH2 A;  3FG7 A;  1AHQ A;  2I2Q A;  1PCX A;  2L72 A;  1WNJ A;  5KYW B;  4BEX 1;  2MP4 A;  3DAW B;  2FF3 A;  5HVK D;  1CFY A;  4PKG G;  5KYN A;  4LIZ A;  1NM1 G;  1VFQ A;  2NUT A;  1PD0 A;  5IVU A;  1D4X G;  1SVR A;  1C0F S;  1M2V B;  5L6W C;  3FFK A;  1T44 G;  3A5L S;  3A5O S;  1ESV S;  1YAG G;  2LLF A;  3CJC G;  3CJB G;  1T3Y A;  1NPH A;  2KVK A;  1DEJ S;  1C0G S;  1MDU A;  1COF A;  3A5N S;  5HVK B;  1T2L A;  1F7S A;  2D8B A;  1QPV A;  2W0I A;  2NUP B;  1NLV G;  5KYY A;  1JHW A;  3EG9 B;  3L50 A;  2VIL A;  1T3X A;  3Q2B A;  2FH2 A;  1AK7 A;  2VAC A;  1H1V G;  3EGX A;  2NUT B;  5FAE A;  1Q8G A;  2FH1 A;  5KYX A;  1P8X A;  4S10 C;  4KEE A;  2FGH A;  1TVJ A;  3TU5 B;  5DD2 A;  5KYU A;  1TMW A;  3EH1 A;  1HQZ 1;  4JD2 H;  3EFO A;  2VIK A;  5A1M A;  1X67 A;  1PD1 A;  3DA7 A;  4PKH B;  4CBU G;  1RGI G;  5KYY B;  1UDM A;  1WM4 A;  1J72 A;  5FAF A;  4KEF A;  3EGD A;  4CBX G;  2MV2 A;  1SVQ A;  4PKI G;  5KYW A;  1D0N A;  2MOT A;  1CNU A;  3EGX B;  1EQY S;  4KED A;  2FH4 A;  3CIP G;  1WFS A;  2HD7 A;  5KYX B;  1Q8X A;  2FH3 A;  1SVY A;  1YVN G;  2LXX A;  1M2V A;  1M2O A;  3FFN A;  2FF6 G;  1AK6 A;  3FG6 A;  4CBW G;  5KYU B;  3EFO B;  2QTV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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