2VLNA

N75a mutant of e9 dnase domain in complex with im9
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
80
structure length
80
Chain Sequence
SISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords COLICIN-E9 IMMUNITY PROTEIN
publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein binding
total genus 28
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vlnA00
2GZGA 2JBGA 3GKLC 1IMPA 2GZFA 2VLNA 2GYKA 4UHPB 2VLQA 1E0HA 2VLOA 1ZNVA 2ERHA 2GZJA 3GJNA 2JAZA 1IMQA 1UNKA 5EW5E 1AYIA 2GZIA 2K5XA 1EMVA 2GZEA 2K0DX 7CEIA 1GXHA 3U43A 1BXIA 1CEIA 2NO8A 4QKOA 2JB0A 4F37A 2VLPA 1GXGA 1MZ8A 1FR2A 1UJZA 2WPTA
chains in the Genus database with same CATH superfamily
1QRJA 2JBGA 2EIAA 2LMLA 5JPAA 2MD9A 2VLQA 2JYGA 1ZNVA 2N6ZA 1VQKP 1K9MQ 3CXCO 1M1KQ 1UNKA 2EG5A 3CCQP 2VSQA 2LF4A 1CEIA 2NO8A 3WBHA 3CCMP 2FQ1A 2N5IA 2QNWA 2KGEA 2XXMA 1E6JP 2KGAA 1VQMP 1ZMBA 3CCEP 3LRYA 1GXGA 1BAJA 2L4BA 1S72P 3H0DA 2LOLA 1X3OA 2L9FA 3I56P 3CE7A 3G28A 1VQOP 2QA4P 2L0QA 4HKGA 4XRQA 1K8AQ 2LIUA 1Q86Q 2CG5B 1A8OA 2MVUA 2VLNA 3HZQA 5F2KA 1M6EX 2MVVA 1E0HA 2FHSC 2K94A 3G6EP 3CCSP 1KD1Q 2PEIA 3CC2P 2GZIA 1IUQA 1GXHA 4QKOA 3DS3A 3DS2A 4XFYA 2N98A 2AVAA 1EOQA 1QVGO 5HGNA 2M8NA 2L22A 3B4QA 2M5RA 2FAEA 5HV8A 1VKUA 5I4TG 1EMVA 2Z46A 2PNGA 4BPGA 1VQ7P 2XZ0D 1HY8A 5CZDB 3CC4P 3Q20A 3B5IA 2KG6A 2GZJA 2JQ4A 2PEKA 3CCVP 2AF8A 2JAZA 2P9XA 2XZ1C 2M8LA 2XT1A 4COCA 2MR7A 3DTJA 4U0FA 1KLPA 4H2WC 1BXIA 2PENA 3CMEP 2FACA 2K0YA 1YJWP 2GZGA 1AUMA 4XFZA 2M8PA 4NEOA 4CA3A 3CC7P 2DGYA 4U0DA 2VLOA 4COPA 1M74A 1YJ9P 3EJDA 3G0VA 1Q7YQ 2K5XA 3U43A 2CGQA 3RG2A 1KC8Q 1VQ6P 2KOQA 1YHQP 4IZ6A 4QNBA 2X2BA 2K2QA 3LMOA 4U0CA 1DV5A 5HGOA 1ACPA 5HVCA 3E2DA 2KR5A 1UJZA 5HGMA 3OW2O 5HGLA 2EHTA 2FADA 4WYMA 1N8RQ 2ERHA 1NJIQ 5F2OA 2KOPA 2N50A 2PY8A 3CMAP 1HQBA 2EFJA 2GDWA 3G1IA 4BPFA 2KG9A 1FR2A 2CNRA 2K93A 2FVAA 1A43A 1VQ5P 3G4SP 3RG6C 4MRTC 4XFXA 3MGEA 2PEMA 1OR5A 3GJNA 4BPHA 4PH0A 2PEJA 5BS2A 2JGPA 5DCKA 2GZEA 2K0DX 7CEIA 1YI2P 1JJ2O 3I55P 2FQ0A 4GR6A 1RNIA 2FVFA 2ROQA 1W2BO 5BS1A 2XV6A 2JYLA 3DS1A 2GZFA 1VQ4P 1YIJP 1K73Q 1IMQA 2JO0A 5EW5E 2AFDA 1AYIA 2KOSA 2VLPA 2GDYA 3DS0A 2BHVA 4U0EA 3G26A 1T8KA 1DNYA 3EJBA 3G21A 1IMPA 2LIWA 1L0IA 2GYKA 3NY7B 1M6NA 2LTEA 2L6EA 4M0IA 1GPJA 4PH1A 3DPHA 4H2XC 2K0XA 2OTLP 2BUOA 2CWOA 2Z44A 5KP7B 1NQ4A 1Z6MA 5KP6B 1M90Q 1RO2A 4PXHB 1QVFO 3G29A 5KP8B 4H2YC 4R0MA 2LKIA 3CCUP 2QEXP 3CPWO 4GR2A 3VRLC 3DS5A 2EHSA 2MR8A 1AF8A 1MZ8A 2N6YA 2PEQA 2K92A 3G1GA 3NTEA 3M1MA 2AFEA 1VQ8P 4DG9A 3CCJP 1KQSO 2JU1A 2OARA 3HYBA 5EJDA 2MY5A 4PWVB 2LL8A 3CCLP 1K30A 5F2NA 1L0HA 1RO0A 2FQ2A 3CCRP 2OTJP 1YITP 2GDXA 2DNWA 2PEOA 4XROA 3H4EA 2WPTA 1F80D 4IPYA 1Q81Q 2JU2A 1Q82Q 2KG8A 1VHNA 3GZMA 3G71P 3CD6P 2Z45A 2KGCA 3GZLA 2MF4A 1D1DA 1VQPP 1VQ9P 2JB0A 2KORA 2KODA 2LPKA 1VQLP 1EIAA 2KWLA 3GKLC 2E1MA 2N5HA 4UHPB 2KGDA 3P05A 2FVEA 2CQ8A 3DS4A 2KOOA 1VQNP 3H47A 2KW2A 2ONTA 3EJEA 4U0BA 4U0AA 4F37A 1YJNP
chains in the Genus database with same CATH topology
2GZGA 2JBGA 3GKLC 1IMPA 2GZFA 2VLNA 2GYKA 4UHPB 2VLQA 1E0HA 2VLOA 1ZNVA 2ERHA 2GZJA 3GJNA 2JAZA 1IMQA 1UNKA 5EW5E 1AYIA 2GZIA 2K5XA 1EMVA 2GZEA 2K0DX 7CEIA 1GXHA 3U43A 1BXIA 1CEIA 2NO8A 4QKOA 2JB0A 4F37A 2VLPA 1GXGA 1MZ8A 1FR2A 1UJZA 2WPTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZG A;  2JBG A;  3GKL C;  1IMP A;  2GZF A;  2VLN A;  2GYK A;  4UHP B;  2VLQ A;  1E0H A;  2VLO A;  1ZNV A;  2ERH A;  2GZJ A;  3GJN A;  2JAZ A;  1IMQ A;  1UNK A;  5EW5 E;  1AYI A;  2GZI A;  2K5X A;  1EMV A;  2GZE A;  2K0D X;  7CEI A;  1GXH A;  3U43 A;  1BXI A;  1CEI A;  2NO8 A;  4QKO A;  2JB0 A;  4F37 A;  2VLP A;  1GXG A;  1MZ8 A;  1FR2 A;  1UJZ A;  2WPT A; 
#chains in the Genus database with same CATH topology
 1QRJ A;  2JBG A;  2EIA A;  2LML A;  5JPA A;  2MD9 A;  2VLQ A;  2JYG A;  1ZNV A;  2N6Z A;  1VQK P;  1K9M Q;  3CXC O;  1M1K Q;  1UNK A;  2EG5 A;  3CCQ P;  2VSQ A;  2LF4 A;  1CEI A;  2NO8 A;  3WBH A;  3CCM P;  2FQ1 A;  2N5I A;  2QNW A;  2KGE A;  2XXM A;  1E6J P;  2KGA A;  1VQM P;  1ZMB A;  3CCE P;  3LRY A;  1GXG A;  1BAJ A;  2L4B A;  1S72 P;  3H0D A;  2LOL A;  1X3O A;  2L9F A;  3I56 P;  3CE7 A;  3G28 A;  1VQO P;  2QA4 P;  2L0Q A;  4HKG A;  4XRQ A;  1K8A Q;  2LIU A;  1Q86 Q;  2CG5 B;  1A8O A;  2MVU A;  2VLN A;  3HZQ A;  5F2K A;  1M6E X;  2MVV A;  1E0H A;  2FHS C;  2K94 A;  3G6E P;  3CCS P;  1KD1 Q;  2PEI A;  3CC2 P;  2GZI A;  1IUQ A;  1GXH A;  4QKO A;  3DS3 A;  3DS2 A;  4XFY A;  2N98 A;  2AVA A;  1EOQ A;  1QVG O;  5HGN A;  2M8N A;  2L22 A;  3B4Q A;  2M5R A;  2FAE A;  5HV8 A;  1VKU A;  5I4T G;  1EMV A;  2Z46 A;  2PNG A;  4BPG A;  1VQ7 P;  2XZ0 D;  1HY8 A;  5CZD B;  3CC4 P;  3Q20 A;  3B5I A;  2KG6 A;  2GZJ A;  2JQ4 A;  2PEK A;  3CCV P;  2AF8 A;  2JAZ A;  2P9X A;  2XZ1 C;  2M8L A;  2XT1 A;  4COC A;  2MR7 A;  3DTJ A;  4U0F A;  1KLP A;  4H2W C;  1BXI A;  2PEN A;  3CME P;  2FAC A;  2K0Y A;  1YJW P;  2GZG A;  1AUM A;  4XFZ A;  2M8P A;  4NEO A;  4CA3 A;  3CC7 P;  2DGY A;  4U0D A;  2VLO A;  4COP A;  1M74 A;  1YJ9 P;  3EJD A;  3G0V A;  1Q7Y Q;  2K5X A;  3U43 A;  2CGQ A;  3RG2 A;  1KC8 Q;  1VQ6 P;  2KOQ A;  1YHQ P;  4IZ6 A;  4QNB A;  2X2B A;  2K2Q A;  3LMO A;  4U0C A;  1DV5 A;  5HGO A;  1ACP A;  5HVC A;  3E2D A;  2KR5 A;  1UJZ A;  5HGM A;  3OW2 O;  5HGL A;  2EHT A;  2FAD A;  4WYM A;  1N8R Q;  2ERH A;  1NJI Q;  5F2O A;  2KOP A;  2N50 A;  2PY8 A;  3CMA P;  1HQB A;  2EFJ A;  2GDW A;  3G1I A;  4BPF A;  2KG9 A;  1FR2 A;  2CNR A;  2K93 A;  2FVA A;  1A43 A;  1VQ5 P;  3G4S P;  3RG6 C;  4MRT C;  4XFX A;  3MGE A;  2PEM A;  1OR5 A;  3GJN A;  4BPH A;  4PH0 A;  2PEJ A;  5BS2 A;  2JGP A;  5DCK A;  2GZE A;  2K0D X;  7CEI A;  1YI2 P;  1JJ2 O;  3I55 P;  2FQ0 A;  4GR6 A;  1RNI A;  2FVF A;  2ROQ A;  1W2B O;  5BS1 A;  2XV6 A;  2JYL A;  3DS1 A;  2GZF A;  1VQ4 P;  1YIJ P;  1K73 Q;  1IMQ A;  2JO0 A;  5EW5 E;  2AFD A;  1AYI A;  2KOS A;  2VLP A;  2GDY A;  3DS0 A;  2BHV A;  4U0E A;  3G26 A;  1T8K A;  1DNY A;  3EJB A;  3G21 A;  1IMP A;  2LIW A;  1L0I A;  2GYK A;  3NY7 B;  1M6N A;  2LTE A;  2L6E A;  4M0I A;  1GPJ A;  4PH1 A;  3DPH A;  4H2X C;  2K0X A;  2OTL P;  2BUO A;  2CWO A;  2Z44 A;  5KP7 B;  1NQ4 A;  1Z6M A;  5KP6 B;  1M90 Q;  1RO2 A;  4PXH B;  1QVF O;  3G29 A;  5KP8 B;  4H2Y C;  4R0M A;  2LKI A;  3CCU P;  2QEX P;  3CPW O;  4GR2 A;  3VRL C;  3DS5 A;  2EHS A;  2MR8 A;  1AF8 A;  1MZ8 A;  2N6Y A;  2PEQ A;  2K92 A;  3G1G A;  3NTE A;  3M1M A;  2AFE A;  1VQ8 P;  4DG9 A;  3CCJ P;  1KQS O;  2JU1 A;  2OAR A;  3HYB A;  5EJD A;  2MY5 A;  4PWV B;  2LL8 A;  3CCL P;  1K30 A;  5F2N A;  1L0H A;  1RO0 A;  2FQ2 A;  3CCR P;  2OTJ P;  1YIT P;  2GDX A;  2DNW A;  2PEO A;  4XRO A;  3H4E A;  2WPT A;  1F80 D;  4IPY A;  1Q81 Q;  2JU2 A;  1Q82 Q;  2KG8 A;  1VHN A;  3GZM A;  3G71 P;  3CD6 P;  2Z45 A;  2KGC A;  3GZL A;  2MF4 A;  1D1D A;  1VQP P;  1VQ9 P;  2JB0 A;  2KOR A;  2KOD A;  2LPK A;  1VQL P;  1EIA A;  2KWL A;  3GKL C;  2E1M A;  2N5H A;  4UHP B;  2KGD A;  3P05 A;  2FVE A;  2CQ8 A;  3DS4 A;  2KOO A;  1VQN P;  3H47 A;  2KW2 A;  2ONT A;  3EJE A;  4U0B A;  4U0A A;  4F37 A;  1YJN P; 
#chains in the Genus database with same CATH homology
 2GZG A;  2JBG A;  3GKL C;  1IMP A;  2GZF A;  2VLN A;  2GYK A;  4UHP B;  2VLQ A;  1E0H A;  2VLO A;  1ZNV A;  2ERH A;  2GZJ A;  3GJN A;  2JAZ A;  1IMQ A;  1UNK A;  5EW5 E;  1AYI A;  2GZI A;  2K5X A;  1EMV A;  2GZE A;  2K0D X;  7CEI A;  1GXH A;  3U43 A;  1BXI A;  1CEI A;  2NO8 A;  4QKO A;  2JB0 A;  4F37 A;  2VLP A;  1GXG A;  1MZ8 A;  1FR2 A;  1UJZ A;  2WPT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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