2VLPA

R54a mutant of e9 dnase domain in complex with im9
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
82
structure length
82
Chain Sequence
KHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords COLICIN-E9 IMMUNITY PROTEIN
publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
source organism Escherichia coli
total genus 30
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vlpA00
2WPTA 1GXGA 4F37A 1EMVA 2GZIA 1AYIA 5EW5E 3GJNA 2GZJA 1GXHA 1BXIA 1UJZA 1CEIA 2GYKA 2JB0A 2JBGA 7CEIA 2K5XA 3U43A 1FR2A 2NO8A 1IMQA 1ZNVA 3GKLC 1IMPA 4QKOA 2VLPA 2GZFA 2GZGA 2VLQA 2K0DX 1E0HA 4UHPB 2ERHA 1MZ8A 2VLOA 1UNKA 2VLNA 2JAZA 2GZEA
chains in the Genus database with same CATH superfamily
4PH1A 1M6NA 1X3OA 2AFEA 1AYIA 2KW2A 2VSQA 2KWLA 1D1DA 2K0XA 2NO8A 2PENA 1BAJA 1VQNP 4GR6A 2FACA 4QKOA 1Q81Q 2LKIA 3EJDA 5HGLA 2N5IA 2K93A 7CEIA 1VQ4P 1Z6MA 2GZIA 1M1KQ 2BUOA 2GZJA 5HGNA 5JPAA 5F2KA 3RG6C 5HGOA 1DV5A 2AFDA 1VQOP 2FQ1A 5HGMA 2XV6A 2VLPA 2Z44A 2JU1A 1E0HA 4UHPB 3I56P 1UNKA 2FVFA 2MR8A 2JYLA 2WPTA 1K73Q 3CCJP 3G0VA 2LIUA 5I4TG 5HVCA 2M8PA 2DNWA 3CC4P 1QRJA 2LF4A 2X2BA 1VQPP 1YJNP 3CD6P 1K9MQ 2N50A 1YI2P 2L9FA 1QVGO 2PY8A 1RNIA 2CWOA 2EG5A 1L0HA 3G26A 3G4SP 2PEOA 4R0MA 4BPHA 2JO0A 3G1GA 2LTEA 1NQ4A 2VLOA 2KG6A 2L4BA 1YJ9P 2N6ZA 3B4QA 3EJBA 1RO2A 2MY5A 2K0YA 3GZMA 5CZDB 4COCA 2FQ0A 1E6JP 3DS2A 3G71P 1YITP 2AVAA 1W2BO 3G1IA 1VQ5P 1VQ7P 2FHSC 2FQ2A 2XZ0D 2M5RA 1Q86Q 3CCQP 3CXCO 2JYGA 2KG8A 2GDYA 2OTLP 2K92A 2GYKA 3VRLC 2K5XA 1M6EX 4QNBA 3DPHA 3CMAP 4IZ6A 1VQLP 2EIAA 3CC2P 4F37A 1OR5A 2MF4A 2PEQA 4CA3A 1M90Q 3GJNA 4U0EA 2ONTA 1KC8Q 2JBGA 3WBHA 4BPGA 3E2DA 3M1MA 1IMQA 2KOPA 4U0BA 3CE7A 1VQ8P 2ERHA 1Q82Q 3CCMP 2VLNA 1A43A 2K2QA 3G28A 1DNYA 2M8NA 2EFJA 2KOQA 3CMEP 3LMOA 3H47A 5HV8A 5KP8B 2CGQA 3HZQA 1QVFO 1VQ9P 2QEXP 1VQKP 2L0QA 4XFXA 4H2YC 3P05A 2E1MA 3H0DA 2MD9A 3CCVP 2JGPA 2PEJA 2GDWA 2K0DX 1HY8A 2JQ4A 2GDXA 1YIJP 2OTJP 1KLPA 2GZEA 3HYBA 5EW5E 1EIAA 2MR7A 1GXHA 1VQMP 1HQBA 1VQ6P 2MVUA 3DTJA 2GZGA 1ZMBA 2CQ8A 1ACPA 4PXHB 2LOLA 3DS1A 4PH0A 2CNRA 1EMVA 2KODA 2M8LA 2KGAA 2N6YA 1CEIA 4HKGA 3GKLC 2JU2A 2L6EA 5KP6B 4XFYA 1T8KA 4GR2A 2VLQA 3DS5A 1VKUA 1MZ8A 2KOSA 2DGYA 2ROQA 1NJIQ 1JJ2O 5BS1A 1K30A 2KORA 2KOOA 4PWVB 3CCEP 2Z46A 2AF8A 3OW2O 1S72P 5F2OA 3GZLA 3LRYA 4U0DA 1IMPA 2EHTA 2XZ1C 4U0FA 2LMLA 3CCRP 2FADA 2QNWA 2XT1A 3DS3A 4H2WC 3CCSP 1VHNA 1N8RQ 4WYMA 3B5IA 3G6EP 1KD1Q 3CCLP 2Z45A 1AF8A 2CG5B 4XFZA 3RG2A 3DS4A 2PEKA 3U43A 1EOQA 1ZNVA 4MRTC 5KP7B 5BS2A 3CC7P 1YHQP 3H4EA 2L22A 2KGDA 1GXGA 3NTEA 2MVVA 3G29A 1M74A 1BXIA 2LPKA 2BHVA 2PNGA 3NY7B 4COPA 2QA4P 5F2NA 1GPJA 2KGEA 2XXMA 1RO0A 2LL8A 3CCUP 2GZFA 4U0AA 5EJDA 3Q20A 2N5HA 4NEOA 2P9XA 1KQSO 2PEMA 1UJZA 2JB0A 4BPFA 1AUMA 1YJWP 3MGEA 2KG9A 2FVEA 2KR5A 1K8AQ 1F80D 2LIWA 4XRQA 1A8OA 3I55P 4M0IA 4XROA 3CPWO 2PEIA 4U0CA 1Q7YQ 1L0IA 5DCKA 4H2XC 1IUQA 1FR2A 4DG9A 2K94A 2EHSA 4IPYA 2OARA 2KGCA 2N98A 3G21A 2FVAA 2FAEA 3EJEA 3DS0A 2JAZA
chains in the Genus database with same CATH topology
2WPTA 1GXGA 4F37A 1EMVA 2GZIA 1AYIA 5EW5E 3GJNA 2GZJA 1GXHA 1BXIA 1UJZA 1CEIA 2GYKA 2JB0A 2JBGA 7CEIA 2K5XA 3U43A 1FR2A 2NO8A 1IMQA 1ZNVA 3GKLC 1IMPA 4QKOA 2VLPA 2GZFA 2GZGA 2VLQA 2K0DX 1E0HA 4UHPB 2ERHA 1MZ8A 2VLOA 1UNKA 2VLNA 2JAZA 2GZEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WPT A;  1GXG A;  4F37 A;  1EMV A;  2GZI A;  1AYI A;  5EW5 E;  3GJN A;  2GZJ A;  1GXH A;  1BXI A;  1UJZ A;  1CEI A;  2GYK A;  2JB0 A;  2JBG A;  7CEI A;  2K5X A;  3U43 A;  1FR2 A;  2NO8 A;  1IMQ A;  1ZNV A;  3GKL C;  1IMP A;  4QKO A;  2VLP A;  2GZF A;  2GZG A;  2VLQ A;  2K0D X;  1E0H A;  4UHP B;  2ERH A;  1MZ8 A;  2VLO A;  1UNK A;  2VLN A;  2JAZ A;  2GZE A; 
#chains in the Genus database with same CATH topology
 4PH1 A;  1M6N A;  1X3O A;  2AFE A;  1AYI A;  2KW2 A;  2VSQ A;  2KWL A;  1D1D A;  2K0X A;  2NO8 A;  2PEN A;  1BAJ A;  1VQN P;  4GR6 A;  2FAC A;  4QKO A;  1Q81 Q;  2LKI A;  3EJD A;  5HGL A;  2N5I A;  2K93 A;  7CEI A;  1VQ4 P;  1Z6M A;  2GZI A;  1M1K Q;  2BUO A;  2GZJ A;  5HGN A;  5JPA A;  5F2K A;  3RG6 C;  5HGO A;  1DV5 A;  2AFD A;  1VQO P;  2FQ1 A;  5HGM A;  2XV6 A;  2VLP A;  2Z44 A;  2JU1 A;  1E0H A;  4UHP B;  3I56 P;  1UNK A;  2FVF A;  2MR8 A;  2JYL A;  2WPT A;  1K73 Q;  3CCJ P;  3G0V A;  2LIU A;  5I4T G;  5HVC A;  2M8P A;  2DNW A;  3CC4 P;  1QRJ A;  2LF4 A;  2X2B A;  1VQP P;  1YJN P;  3CD6 P;  1K9M Q;  2N50 A;  1YI2 P;  2L9F A;  1QVG O;  2PY8 A;  1RNI A;  2CWO A;  2EG5 A;  1L0H A;  3G26 A;  3G4S P;  2PEO A;  4R0M A;  4BPH A;  2JO0 A;  3G1G A;  2LTE A;  1NQ4 A;  2VLO A;  2KG6 A;  2L4B A;  1YJ9 P;  2N6Z A;  3B4Q A;  3EJB A;  1RO2 A;  2MY5 A;  2K0Y A;  3GZM A;  5CZD B;  4COC A;  2FQ0 A;  1E6J P;  3DS2 A;  3G71 P;  1YIT P;  2AVA A;  1W2B O;  3G1I A;  1VQ5 P;  1VQ7 P;  2FHS C;  2FQ2 A;  2XZ0 D;  2M5R A;  1Q86 Q;  3CCQ P;  3CXC O;  2JYG A;  2KG8 A;  2GDY A;  2OTL P;  2K92 A;  2GYK A;  3VRL C;  2K5X A;  1M6E X;  4QNB A;  3DPH A;  3CMA P;  4IZ6 A;  1VQL P;  2EIA A;  3CC2 P;  4F37 A;  1OR5 A;  2MF4 A;  2PEQ A;  4CA3 A;  1M90 Q;  3GJN A;  4U0E A;  2ONT A;  1KC8 Q;  2JBG A;  3WBH A;  4BPG A;  3E2D A;  3M1M A;  1IMQ A;  2KOP A;  4U0B A;  3CE7 A;  1VQ8 P;  2ERH A;  1Q82 Q;  3CCM P;  2VLN A;  1A43 A;  2K2Q A;  3G28 A;  1DNY A;  2M8N A;  2EFJ A;  2KOQ A;  3CME P;  3LMO A;  3H47 A;  5HV8 A;  5KP8 B;  2CGQ A;  3HZQ A;  1QVF O;  1VQ9 P;  2QEX P;  1VQK P;  2L0Q A;  4XFX A;  4H2Y C;  3P05 A;  2E1M A;  3H0D A;  2MD9 A;  3CCV P;  2JGP A;  2PEJ A;  2GDW A;  2K0D X;  1HY8 A;  2JQ4 A;  2GDX A;  1YIJ P;  2OTJ P;  1KLP A;  2GZE A;  3HYB A;  5EW5 E;  1EIA A;  2MR7 A;  1GXH A;  1VQM P;  1HQB A;  1VQ6 P;  2MVU A;  3DTJ A;  2GZG A;  1ZMB A;  2CQ8 A;  1ACP A;  4PXH B;  2LOL A;  3DS1 A;  4PH0 A;  2CNR A;  1EMV A;  2KOD A;  2M8L A;  2KGA A;  2N6Y A;  1CEI A;  4HKG A;  3GKL C;  2JU2 A;  2L6E A;  5KP6 B;  4XFY A;  1T8K A;  4GR2 A;  2VLQ A;  3DS5 A;  1VKU A;  1MZ8 A;  2KOS A;  2DGY A;  2ROQ A;  1NJI Q;  1JJ2 O;  5BS1 A;  1K30 A;  2KOR A;  2KOO A;  4PWV B;  3CCE P;  2Z46 A;  2AF8 A;  3OW2 O;  1S72 P;  5F2O A;  3GZL A;  3LRY A;  4U0D A;  1IMP A;  2EHT A;  2XZ1 C;  4U0F A;  2LML A;  3CCR P;  2FAD A;  2QNW A;  2XT1 A;  3DS3 A;  4H2W C;  3CCS P;  1VHN A;  1N8R Q;  4WYM A;  3B5I A;  3G6E P;  1KD1 Q;  3CCL P;  2Z45 A;  1AF8 A;  2CG5 B;  4XFZ A;  3RG2 A;  3DS4 A;  2PEK A;  3U43 A;  1EOQ A;  1ZNV A;  4MRT C;  5KP7 B;  5BS2 A;  3CC7 P;  1YHQ P;  3H4E A;  2L22 A;  2KGD A;  1GXG A;  3NTE A;  2MVV A;  3G29 A;  1M74 A;  1BXI A;  2LPK A;  2BHV A;  2PNG A;  3NY7 B;  4COP A;  2QA4 P;  5F2N A;  1GPJ A;  2KGE A;  2XXM A;  1RO0 A;  2LL8 A;  3CCU P;  2GZF A;  4U0A A;  5EJD A;  3Q20 A;  2N5H A;  4NEO A;  2P9X A;  1KQS O;  2PEM A;  1UJZ A;  2JB0 A;  4BPF A;  1AUM A;  1YJW P;  3MGE A;  2KG9 A;  2FVE A;  2KR5 A;  1K8A Q;  1F80 D;  2LIW A;  4XRQ A;  1A8O A;  3I55 P;  4M0I A;  4XRO A;  3CPW O;  2PEI A;  4U0C A;  1Q7Y Q;  1L0I A;  5DCK A;  4H2X C;  1IUQ A;  1FR2 A;  4DG9 A;  2K94 A;  2EHS A;  4IPY A;  2OAR A;  2KGC A;  2N98 A;  3G21 A;  2FVA A;  2FAE A;  3EJE A;  3DS0 A;  2JAZ A; 
#chains in the Genus database with same CATH homology
 2WPT A;  1GXG A;  4F37 A;  1EMV A;  2GZI A;  1AYI A;  5EW5 E;  3GJN A;  2GZJ A;  1GXH A;  1BXI A;  1UJZ A;  1CEI A;  2GYK A;  2JB0 A;  2JBG A;  7CEI A;  2K5X A;  3U43 A;  1FR2 A;  2NO8 A;  1IMQ A;  1ZNV A;  3GKL C;  1IMP A;  4QKO A;  2VLP A;  2GZF A;  2GZG A;  2VLQ A;  2K0D X;  1E0H A;  4UHP B;  2ERH A;  1MZ8 A;  2VLO A;  1UNK A;  2VLN A;  2JAZ A;  2GZE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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