2VLPA

R54a mutant of e9 dnase domain in complex with im9
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
82
structure length
82
Chain Sequence
KHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords COLICIN-E9 IMMUNITY PROTEIN
publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein binding
total genus 30
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vlpA00
1BXIA 2NO8A 2GZIA 1FR2A 1AYIA 2VLPA 1IMPA 7CEIA 2VLQA 3GJNA 2GYKA 1MZ8A 3U43A 4F37A 2JB0A 2VLOA 2VLNA 1UJZA 1ZNVA 2JBGA 4UHPB 5EW5E 1GXHA 2WPTA 1E0HA 2JAZA 2K5XA 2GZJA 1CEIA 2GZGA 2K0DX 2GZEA 1EMVA 2GZFA 2ERHA 1UNKA 3GKLC 4QKOA 1IMQA 1GXGA
chains in the Genus database with same CATH superfamily
1QVGO 4U0BA 3H47A 2JU1A 4PWVB 2L0QA 1OR5A 2KOPA 2K0YA 2AFEA 1AUMA 1EIAA 1QVFO 2LOLA 4U0CA 1DV5A 1YI2P 1UNKA 1IMQA 2JQ4A 2KOSA 3I55P 1RO2A 1VQMP 2XV6A 2M8NA 4PXHB 4DG9A 3I56P 3G1IA 4H2YC 4IZ6A 3G26A 3M1MA 2FAEA 1L0HA 2PEQA 3G71P 2ONTA 3MGEA 2K5XA 4XFXA 1VQ6P 2L22A 4U0EA 3H4EA 2N98A 2MD9A 1AYIA 2N6ZA 2MVVA 2JO0A 1VQKP 1HQBA 3G4SP 4GR2A 1NJIQ 2QNWA 2OTLP 2Z46A 3DTJA 4UHPB 2CNRA 3B4QA 2KR5A 2MF4A 2LL8A 2PEJA 1VQ7P 1HY8A 1M6EX 1YHQP 2KG6A 2QA4P 3E2DA 2KGEA 2PENA 2LPKA 2AF8A 4XFYA 5DCKA 5CZDB 3CC4P 1BAJA 4NEOA 5I4TG 5F2OA 2LIWA 2JAZA 2FQ0A 2M5RA 2PEIA 1EMVA 2JYLA 2ERHA 4U0DA 5JPAA 1IUQA 1A8OA 3NTEA 3CPWO 4XROA 4U0AA 5HGMA 2EHSA 2X2BA 3EJBA 4F37A 2VLOA 2VLNA 2JBGA 5EW5E 2Z44A 2K92A 1K9MQ 4BPHA 3CC7P 3LMOA 2MVUA 2L9FA 3DS4A 1YJ9P 1JJ2O 2XZ0D 4COPA 5HV8A 3P05A 1E6JP 1Z6MA 2FVAA 1VQPP 2N5IA 1L0IA 1KQSO 1T8KA 2M8PA 1N8RQ 1GPJA 1D1DA 2FVEA 2PNGA 4QNBA 2CQ8A 1KC8Q 2M8LA 2N50A 1VQNP 1CEIA 2GZGA 3CCMP 3DS1A 4U0FA 2GDYA 2KWLA 3G0VA 4COCA 3CCEP 5HGLA 3G6EP 3RG2A 2N5HA 2EHTA 1K30A 2XZ1C 1Q82Q 2LIUA 3G1GA 2E1MA 1YITP 1ZMBA 2BHVA 2CGQA 1W2BO 2DNWA 2L4BA 1VQ9P 2KG8A 4MRTC 4IPYA 2PEKA 2K93A 2PEOA 1YJNP 2LTEA 1DNYA 2EIAA 2GYKA 4H2WC 3CCQP 3LRYA 3B5IA 3CXCO 3CCRP 2PY8A 1Q7YQ 1QRJA 1FR2A 1IMPA 2KORA 1X3OA 2KOQA 2KGDA 1RNIA 3CMAP 2XT1A 3G28A 2FHSC 2FACA 3VRLC 1GXHA 2BUOA 1M1KQ 2K94A 1BXIA 3DS0A 2AFDA 1ACPA 1VQLP 3CCUP 4XRQA 5BS1A 1ZNVA 2GZJA 2AVAA 2OTJP 2GDWA 1VQOP 5BS2A 2Z45A 3CCLP 4WYMA 1AF8A 3GJNA 2FVFA 2MY5A 1MZ8A 2FQ2A 3U43A 2JU2A 3CCVP 2PEMA 1S72P 5HGNA 2WPTA 2FQ1A 1VQ4P 1GXGA 1M90Q 2MR8A 2ROQA 5F2KA 2KODA 4PH1A 2KG9A 3OW2O 2VLQA 2L6EA 3DS3A 3RG6C 2P9XA 4HKGA 1KLPA 3DS5A 4H2XC 4M0IA 3DS2A 3GZLA 3GZMA 4BPGA 1K8AQ 4QKOA 1F80D 3EJDA 1KD1Q 2K0XA 2VLPA 2FADA 3Q20A 3H0DA 4GR6A 2KW2A 5HGOA 2CWOA 3EJEA 4CA3A 5EJDA 3WBHA 3DPHA 1NQ4A 3CE7A 2JGPA 1VHNA 3CCJP 2XXMA 7CEIA 3NY7B 5KP7B 2LF4A 1VKUA 2QEXP 1Q86Q 3G21A 2GZEA 4R0MA 5KP8B 3GKLC 2NO8A 3G29A 1K73Q 2EFJA 3CMEP 5F2NA 2GDXA 2LMLA 5KP6B 4BPFA 2LKIA 1VQ5P 2JB0A 1UJZA 2CG5B 1YJWP 5HVCA 1M6NA 2KOOA 2K2QA 2OARA 2EG5A 2K0DX 2GZFA 4PH0A 2VSQA 2KGAA 2DGYA 1Q81Q 2GZIA 4XFZA 2KGCA 3CC2P 1YIJP 3CCSP 1VQ8P 3HYBA 2JYGA 1M74A 2MR7A 1A43A 1E0HA 2N6YA 3CD6P 1EOQA 1RO0A 3HZQA
chains in the Genus database with same CATH topology
1BXIA 2NO8A 2GZIA 1FR2A 1AYIA 2VLPA 1IMPA 7CEIA 2VLQA 3GJNA 2GYKA 1MZ8A 3U43A 4F37A 2JB0A 2VLOA 2VLNA 1UJZA 1ZNVA 2JBGA 4UHPB 5EW5E 1GXHA 2WPTA 1E0HA 2JAZA 2K5XA 2GZJA 1CEIA 2GZGA 2K0DX 2GZEA 1EMVA 2GZFA 2ERHA 1UNKA 3GKLC 4QKOA 1IMQA 1GXGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BXI A;  2NO8 A;  2GZI A;  1FR2 A;  1AYI A;  2VLP A;  1IMP A;  7CEI A;  2VLQ A;  3GJN A;  2GYK A;  1MZ8 A;  3U43 A;  4F37 A;  2JB0 A;  2VLO A;  2VLN A;  1UJZ A;  1ZNV A;  2JBG A;  4UHP B;  5EW5 E;  1GXH A;  2WPT A;  1E0H A;  2JAZ A;  2K5X A;  2GZJ A;  1CEI A;  2GZG A;  2K0D X;  2GZE A;  1EMV A;  2GZF A;  2ERH A;  1UNK A;  3GKL C;  4QKO A;  1IMQ A;  1GXG A; 
#chains in the Genus database with same CATH topology
 1QVG O;  4U0B A;  3H47 A;  2JU1 A;  4PWV B;  2L0Q A;  1OR5 A;  2KOP A;  2K0Y A;  2AFE A;  1AUM A;  1EIA A;  1QVF O;  2LOL A;  4U0C A;  1DV5 A;  1YI2 P;  1UNK A;  1IMQ A;  2JQ4 A;  2KOS A;  3I55 P;  1RO2 A;  1VQM P;  2XV6 A;  2M8N A;  4PXH B;  4DG9 A;  3I56 P;  3G1I A;  4H2Y C;  4IZ6 A;  3G26 A;  3M1M A;  2FAE A;  1L0H A;  2PEQ A;  3G71 P;  2ONT A;  3MGE A;  2K5X A;  4XFX A;  1VQ6 P;  2L22 A;  4U0E A;  3H4E A;  2N98 A;  2MD9 A;  1AYI A;  2N6Z A;  2MVV A;  2JO0 A;  1VQK P;  1HQB A;  3G4S P;  4GR2 A;  1NJI Q;  2QNW A;  2OTL P;  2Z46 A;  3DTJ A;  4UHP B;  2CNR A;  3B4Q A;  2KR5 A;  2MF4 A;  2LL8 A;  2PEJ A;  1VQ7 P;  1HY8 A;  1M6E X;  1YHQ P;  2KG6 A;  2QA4 P;  3E2D A;  2KGE A;  2PEN A;  2LPK A;  2AF8 A;  4XFY A;  5DCK A;  5CZD B;  3CC4 P;  1BAJ A;  4NEO A;  5I4T G;  5F2O A;  2LIW A;  2JAZ A;  2FQ0 A;  2M5R A;  2PEI A;  1EMV A;  2JYL A;  2ERH A;  4U0D A;  5JPA A;  1IUQ A;  1A8O A;  3NTE A;  3CPW O;  4XRO A;  4U0A A;  5HGM A;  2EHS A;  2X2B A;  3EJB A;  4F37 A;  2VLO A;  2VLN A;  2JBG A;  5EW5 E;  2Z44 A;  2K92 A;  1K9M Q;  4BPH A;  3CC7 P;  3LMO A;  2MVU A;  2L9F A;  3DS4 A;  1YJ9 P;  1JJ2 O;  2XZ0 D;  4COP A;  5HV8 A;  3P05 A;  1E6J P;  1Z6M A;  2FVA A;  1VQP P;  2N5I A;  1L0I A;  1KQS O;  1T8K A;  2M8P A;  1N8R Q;  1GPJ A;  1D1D A;  2FVE A;  2PNG A;  4QNB A;  2CQ8 A;  1KC8 Q;  2M8L A;  2N50 A;  1VQN P;  1CEI A;  2GZG A;  3CCM P;  3DS1 A;  4U0F A;  2GDY A;  2KWL A;  3G0V A;  4COC A;  3CCE P;  5HGL A;  3G6E P;  3RG2 A;  2N5H A;  2EHT A;  1K30 A;  2XZ1 C;  1Q82 Q;  2LIU A;  3G1G A;  2E1M A;  1YIT P;  1ZMB A;  2BHV A;  2CGQ A;  1W2B O;  2DNW A;  2L4B A;  1VQ9 P;  2KG8 A;  4MRT C;  4IPY A;  2PEK A;  2K93 A;  2PEO A;  1YJN P;  2LTE A;  1DNY A;  2EIA A;  2GYK A;  4H2W C;  3CCQ P;  3LRY A;  3B5I A;  3CXC O;  3CCR P;  2PY8 A;  1Q7Y Q;  1QRJ A;  1FR2 A;  1IMP A;  2KOR A;  1X3O A;  2KOQ A;  2KGD A;  1RNI A;  3CMA P;  2XT1 A;  3G28 A;  2FHS C;  2FAC A;  3VRL C;  1GXH A;  2BUO A;  1M1K Q;  2K94 A;  1BXI A;  3DS0 A;  2AFD A;  1ACP A;  1VQL P;  3CCU P;  4XRQ A;  5BS1 A;  1ZNV A;  2GZJ A;  2AVA A;  2OTJ P;  2GDW A;  1VQO P;  5BS2 A;  2Z45 A;  3CCL P;  4WYM A;  1AF8 A;  3GJN A;  2FVF A;  2MY5 A;  1MZ8 A;  2FQ2 A;  3U43 A;  2JU2 A;  3CCV P;  2PEM A;  1S72 P;  5HGN A;  2WPT A;  2FQ1 A;  1VQ4 P;  1GXG A;  1M90 Q;  2MR8 A;  2ROQ A;  5F2K A;  2KOD A;  4PH1 A;  2KG9 A;  3OW2 O;  2VLQ A;  2L6E A;  3DS3 A;  3RG6 C;  2P9X A;  4HKG A;  1KLP A;  3DS5 A;  4H2X C;  4M0I A;  3DS2 A;  3GZL A;  3GZM A;  4BPG A;  1K8A Q;  4QKO A;  1F80 D;  3EJD A;  1KD1 Q;  2K0X A;  2VLP A;  2FAD A;  3Q20 A;  3H0D A;  4GR6 A;  2KW2 A;  5HGO A;  2CWO A;  3EJE A;  4CA3 A;  5EJD A;  3WBH A;  3DPH A;  1NQ4 A;  3CE7 A;  2JGP A;  1VHN A;  3CCJ P;  2XXM A;  7CEI A;  3NY7 B;  5KP7 B;  2LF4 A;  1VKU A;  2QEX P;  1Q86 Q;  3G21 A;  2GZE A;  4R0M A;  5KP8 B;  3GKL C;  2NO8 A;  3G29 A;  1K73 Q;  2EFJ A;  3CME P;  5F2N A;  2GDX A;  2LML A;  5KP6 B;  4BPF A;  2LKI A;  1VQ5 P;  2JB0 A;  1UJZ A;  2CG5 B;  1YJW P;  5HVC A;  1M6N A;  2KOO A;  2K2Q A;  2OAR A;  2EG5 A;  2K0D X;  2GZF A;  4PH0 A;  2VSQ A;  2KGA A;  2DGY A;  1Q81 Q;  2GZI A;  4XFZ A;  2KGC A;  3CC2 P;  1YIJ P;  3CCS P;  1VQ8 P;  3HYB A;  2JYG A;  1M74 A;  2MR7 A;  1A43 A;  1E0H A;  2N6Y A;  3CD6 P;  1EOQ A;  1RO0 A;  3HZQ A; 
#chains in the Genus database with same CATH homology
 1BXI A;  2NO8 A;  2GZI A;  1FR2 A;  1AYI A;  2VLP A;  1IMP A;  7CEI A;  2VLQ A;  3GJN A;  2GYK A;  1MZ8 A;  3U43 A;  4F37 A;  2JB0 A;  2VLO A;  2VLN A;  1UJZ A;  1ZNV A;  2JBG A;  4UHP B;  5EW5 E;  1GXH A;  2WPT A;  1E0H A;  2JAZ A;  2K5X A;  2GZJ A;  1CEI A;  2GZG A;  2K0D X;  2GZE A;  1EMV A;  2GZF A;  2ERH A;  1UNK A;  3GKL C;  4QKO A;  1IMQ A;  1GXG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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