2VLQA

F86a mutant of e9 dnase domain in complex with im9
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
84
structure length
84
Chain Sequence
b'MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords COLICIN-E9 IMMUNITY PROTEIN
publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein binding
total genus 30
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vlqA00
2GZJA 2K5XA 1AYIA 2VLQA 1MZ8A 1UJZA 2JB0A 7CEIA 1BXIA 2GYKA 2K0DX 1UNKA 1ZNVA 1FR2A 4F37A 2JAZA 2GZFA 2VLOA 3GKLC 2GZGA 2JBGA 4UHPB 2NO8A 1IMPA 2ERHA 1CEIA 4QKOA 1GXGA 2VLNA 2GZIA 2WPTA 2GZEA 3GJNA 1E0HA 2VLPA 5EW5E 1GXHA 1IMQA 3U43A 1EMVA
chains in the Genus database with same CATH superfamily
5HGLA 2GDYA 4XFXA 4PXHB 2JYLA 2VLOA 1L0IA 2PEKA 1VQPP 2JBGA 2FVFA 2CGQA 4R0MA 2VLNA 3G28A 1VQ5P 1HQBA 5HGMA 2XT1A 4MRTC 2M8NA 1VQ8P 2PENA 1NQ4A 5JPAA 2QEXP 4CA3A 3CC4P 2XZ1C 2LKIA 3E2DA 3CXCO 2OTLP 2GZFA 3GKLC 3WBHA 2FVEA 1S72P 2AFEA 3I55P 2L9FA 1VQ9P 1T8KA 2Z44A 1VQNP 2JO0A 2M8LA 2K93A 2LPKA 4PH1A 4PWVB 3G6EP 1Q86Q 3H4EA 3CD6P 2KG6A 1KLPA 2JQ4A 2EIAA 3G4SP 3CCLP 5HGOA 1M6NA 5EW5E 1IMQA 2PEJA 1VQ7P 2K0XA 3G71P 3H47A 1VHNA 1YHQP 3OW2O 3CCEP 4U0DA 4GR6A 1YIJP 2N6ZA 3EJDA 3DTJA 2FVAA 1A8OA 1RO0A 3GJNA 1BAJA 1YJNP 2L0QA 5EJDA 3Q20A 3LMOA 2KGEA 3G1GA 2FAEA 2P9XA 2KOPA 3DS1A 4IPYA 2K92A 4H2XC 1A43A 1ZMBA 2OARA 2M5RA 3I56P 3VRLC 2JGPA 3G1IA 1JJ2O 2AF8A 1W2BO 2N6YA 3EJEA 3CPWO 2XV6A 3DS4A 3DS5A 2K5XA 3NTEA 2JYGA 1E6JP 2Z45A 3CMAP 2GDXA 2N5HA 1GXGA 3CCVP 4QNBA 2JU2A 1AF8A 1K9MQ 2MF4A 5F2OA 4XROA 1VQKP 1D1DA 2PEOA 2LL8A 4U0FA 5BS2A 1YI2P 2JAZA 2PEQA 2EG5A 2XZ0D 1IUQA 1EIAA 2MVVA 1VQLP 1VQMP 1AUMA 3G29A 2JU1A 3DS2A 2MR7A 2QA4P 1E0HA 2E1MA 3CCQP 3U43A 3CC7P 2GZJA 1UJZA 2Z46A 2AVAA 4U0BA 1ZNVA 1VQ4P 1K8AQ 4PH0A 5HVCA 2LMLA 2QNWA 3CCMP 2AFDA 1RNIA 2EHSA 2K0YA 2LTEA 2MY5A 3CE7A 1Q81Q 1Z6MA 2K94A 4H2WC 2JB0A 2L4BA 2FQ2A 4XRQA 2GYKA 1KQSO 3NY7B 4XFYA 2N50A 3G0VA 1HY8A 3H0DA 2LIWA 4BPHA 3P05A 2ERHA 1VQ6P 2KORA 5KP6B 5BS1A 5I4TG 2VLPA 4H2YC 1K73Q 2K2QA 1RO2A 3M1MA 2VLQA 1MZ8A 5F2NA 1BXIA 1GPJA 2K0DX 1N8RQ 2BUOA 1M90Q 2PY8A 1QRJA 2KR5A 1IMPA 3GZMA 2N98A 1DNYA 1KD1Q 1M1KQ 1Q7YQ 1YJ9P 7CEIA 3CCJP 3GZLA 4WYMA 3DPHA 2CWOA 1UNKA 2FACA 3G26A 1X3OA 2MD9A 2ONTA 2KOSA 2M8PA 3MGEA 2LIUA 1K30A 4U0EA 4COPA 2ROQA 2PEIA 4M0IA 3CCRP 1GXHA 2FQ1A 3B4QA 1AYIA 2KGCA 2CQ8A 2L22A 1KC8Q 3G21A 2PEMA 3RG6C 2LF4A 2L6EA 5HGNA 1ACPA 1M74A 2MR8A 5KP7B 5F2KA 1EOQA 2KOQA 3HZQA 2MVUA 4U0AA 1DV5A 2LOLA 4BPGA 1F80D 1YITP 2GDWA 4IZ6A 2KG9A 1QVGO 2DGYA 4UHPB 2FHSC 4COCA 1CEIA 5CZDB 2KGAA 1VKUA 2WPTA 1YJWP 1L0HA 1OR5A 1EMVA 1M6EX 1QVFO 3DS3A 2KW2A 4DG9A 3HYBA 3CC2P 2CNRA 4HKGA 2GZGA 2KWLA 3B5IA 2KG8A 1NJIQ 2FQ0A 2GZIA 2DNWA 5DCKA 3CCUP 2OTJP 2BHVA 2KGDA 1Q82Q 5KP8B 2VSQA 4NEOA 2FADA 2NO8A 2KOOA 2KODA 3EJBA 3LRYA 4BPFA 3DS0A 2XXMA 5HV8A 1FR2A 2PNGA 4F37A 4XFZA 2EHTA 1VQOP 2N5IA 4QKOA 4U0CA 3CCSP 3RG2A 2GZEA 2EFJA 4GR2A 3CMEP 2CG5B 2X2BA
chains in the Genus database with same CATH topology
2GZJA 2K5XA 1AYIA 2VLQA 1MZ8A 1UJZA 2JB0A 7CEIA 1BXIA 2GYKA 2K0DX 1UNKA 1ZNVA 1FR2A 4F37A 2JAZA 2GZFA 2VLOA 3GKLC 2GZGA 2JBGA 4UHPB 2NO8A 1IMPA 2ERHA 1CEIA 4QKOA 1GXGA 2VLNA 2GZIA 2WPTA 2GZEA 3GJNA 1E0HA 2VLPA 5EW5E 1GXHA 1IMQA 3U43A 1EMVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZJ A;  2K5X A;  1AYI A;  2VLQ A;  1MZ8 A;  1UJZ A;  2JB0 A;  7CEI A;  1BXI A;  2GYK A;  2K0D X;  1UNK A;  1ZNV A;  1FR2 A;  4F37 A;  2JAZ A;  2GZF A;  2VLO A;  3GKL C;  2GZG A;  2JBG A;  4UHP B;  2NO8 A;  1IMP A;  2ERH A;  1CEI A;  4QKO A;  1GXG A;  2VLN A;  2GZI A;  2WPT A;  2GZE A;  3GJN A;  1E0H A;  2VLP A;  5EW5 E;  1GXH A;  1IMQ A;  3U43 A;  1EMV A; 
#chains in the Genus database with same CATH topology
 5HGL A;  2GDY A;  4XFX A;  4PXH B;  2JYL A;  2VLO A;  1L0I A;  2PEK A;  1VQP P;  2JBG A;  2FVF A;  2CGQ A;  4R0M A;  2VLN A;  3G28 A;  1VQ5 P;  1HQB A;  5HGM A;  2XT1 A;  4MRT C;  2M8N A;  1VQ8 P;  2PEN A;  1NQ4 A;  5JPA A;  2QEX P;  4CA3 A;  3CC4 P;  2XZ1 C;  2LKI A;  3E2D A;  3CXC O;  2OTL P;  2GZF A;  3GKL C;  3WBH A;  2FVE A;  1S72 P;  2AFE A;  3I55 P;  2L9F A;  1VQ9 P;  1T8K A;  2Z44 A;  1VQN P;  2JO0 A;  2M8L A;  2K93 A;  2LPK A;  4PH1 A;  4PWV B;  3G6E P;  1Q86 Q;  3H4E A;  3CD6 P;  2KG6 A;  1KLP A;  2JQ4 A;  2EIA A;  3G4S P;  3CCL P;  5HGO A;  1M6N A;  5EW5 E;  1IMQ A;  2PEJ A;  1VQ7 P;  2K0X A;  3G71 P;  3H47 A;  1VHN A;  1YHQ P;  3OW2 O;  3CCE P;  4U0D A;  4GR6 A;  1YIJ P;  2N6Z A;  3EJD A;  3DTJ A;  2FVA A;  1A8O A;  1RO0 A;  3GJN A;  1BAJ A;  1YJN P;  2L0Q A;  5EJD A;  3Q20 A;  3LMO A;  2KGE A;  3G1G A;  2FAE A;  2P9X A;  2KOP A;  3DS1 A;  4IPY A;  2K92 A;  4H2X C;  1A43 A;  1ZMB A;  2OAR A;  2M5R A;  3I56 P;  3VRL C;  2JGP A;  3G1I A;  1JJ2 O;  2AF8 A;  1W2B O;  2N6Y A;  3EJE A;  3CPW O;  2XV6 A;  3DS4 A;  3DS5 A;  2K5X A;  3NTE A;  2JYG A;  1E6J P;  2Z45 A;  3CMA P;  2GDX A;  2N5H A;  1GXG A;  3CCV P;  4QNB A;  2JU2 A;  1AF8 A;  1K9M Q;  2MF4 A;  5F2O A;  4XRO A;  1VQK P;  1D1D A;  2PEO A;  2LL8 A;  4U0F A;  5BS2 A;  1YI2 P;  2JAZ A;  2PEQ A;  2EG5 A;  2XZ0 D;  1IUQ A;  1EIA A;  2MVV A;  1VQL P;  1VQM P;  1AUM A;  3G29 A;  2JU1 A;  3DS2 A;  2MR7 A;  2QA4 P;  1E0H A;  2E1M A;  3CCQ P;  3U43 A;  3CC7 P;  2GZJ A;  1UJZ A;  2Z46 A;  2AVA A;  4U0B A;  1ZNV A;  1VQ4 P;  1K8A Q;  4PH0 A;  5HVC A;  2LML A;  2QNW A;  3CCM P;  2AFD A;  1RNI A;  2EHS A;  2K0Y A;  2LTE A;  2MY5 A;  3CE7 A;  1Q81 Q;  1Z6M A;  2K94 A;  4H2W C;  2JB0 A;  2L4B A;  2FQ2 A;  4XRQ A;  2GYK A;  1KQS O;  3NY7 B;  4XFY A;  2N50 A;  3G0V A;  1HY8 A;  3H0D A;  2LIW A;  4BPH A;  3P05 A;  2ERH A;  1VQ6 P;  2KOR A;  5KP6 B;  5BS1 A;  5I4T G;  2VLP A;  4H2Y C;  1K73 Q;  2K2Q A;  1RO2 A;  3M1M A;  2VLQ A;  1MZ8 A;  5F2N A;  1BXI A;  1GPJ A;  2K0D X;  1N8R Q;  2BUO A;  1M90 Q;  2PY8 A;  1QRJ A;  2KR5 A;  1IMP A;  3GZM A;  2N98 A;  1DNY A;  1KD1 Q;  1M1K Q;  1Q7Y Q;  1YJ9 P;  7CEI A;  3CCJ P;  3GZL A;  4WYM A;  3DPH A;  2CWO A;  1UNK A;  2FAC A;  3G26 A;  1X3O A;  2MD9 A;  2ONT A;  2KOS A;  2M8P A;  3MGE A;  2LIU A;  1K30 A;  4U0E A;  4COP A;  2ROQ A;  2PEI A;  4M0I A;  3CCR P;  1GXH A;  2FQ1 A;  3B4Q A;  1AYI A;  2KGC A;  2CQ8 A;  2L22 A;  1KC8 Q;  3G21 A;  2PEM A;  3RG6 C;  2LF4 A;  2L6E A;  5HGN A;  1ACP A;  1M74 A;  2MR8 A;  5KP7 B;  5F2K A;  1EOQ A;  2KOQ A;  3HZQ A;  2MVU A;  4U0A A;  1DV5 A;  2LOL A;  4BPG A;  1F80 D;  1YIT P;  2GDW A;  4IZ6 A;  2KG9 A;  1QVG O;  2DGY A;  4UHP B;  2FHS C;  4COC A;  1CEI A;  5CZD B;  2KGA A;  1VKU A;  2WPT A;  1YJW P;  1L0H A;  1OR5 A;  1EMV A;  1M6E X;  1QVF O;  3DS3 A;  2KW2 A;  4DG9 A;  3HYB A;  3CC2 P;  2CNR A;  4HKG A;  2GZG A;  2KWL A;  3B5I A;  2KG8 A;  1NJI Q;  2FQ0 A;  2GZI A;  2DNW A;  5DCK A;  3CCU P;  2OTJ P;  2BHV A;  2KGD A;  1Q82 Q;  5KP8 B;  2VSQ A;  4NEO A;  2FAD A;  2NO8 A;  2KOO A;  2KOD A;  3EJB A;  3LRY A;  4BPF A;  3DS0 A;  2XXM A;  5HV8 A;  1FR2 A;  2PNG A;  4F37 A;  4XFZ A;  2EHT A;  1VQO P;  2N5I A;  4QKO A;  4U0C A;  3CCS P;  3RG2 A;  2GZE A;  2EFJ A;  4GR2 A;  3CME P;  2CG5 B;  2X2B A; 
#chains in the Genus database with same CATH homology
 2GZJ A;  2K5X A;  1AYI A;  2VLQ A;  1MZ8 A;  1UJZ A;  2JB0 A;  7CEI A;  1BXI A;  2GYK A;  2K0D X;  1UNK A;  1ZNV A;  1FR2 A;  4F37 A;  2JAZ A;  2GZF A;  2VLO A;  3GKL C;  2GZG A;  2JBG A;  4UHP B;  2NO8 A;  1IMP A;  2ERH A;  1CEI A;  4QKO A;  1GXG A;  2VLN A;  2GZI A;  2WPT A;  2GZE A;  3GJN A;  1E0H A;  2VLP A;  5EW5 E;  1GXH A;  1IMQ A;  3U43 A;  1EMV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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