2VLQA

F86a mutant of e9 dnase domain in complex with im9
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
84
structure length
84
Chain Sequence
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords COLICIN-E9 IMMUNITY PROTEIN
publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein binding
total genus 30
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vlqA00
5EW5E 2JB0A 2K5XA 1CEIA 2NO8A 2VLOA 2JBGA 7CEIA 2GZIA 1GXGA 1ZNVA 2VLNA 1E0HA 2ERHA 2VLQA 1GXHA 1IMPA 1IMQA 2GZGA 1UNKA 1FR2A 2WPTA 4QKOA 3GJNA 3GKLC 4F37A 4UHPB 2K0DX 2JAZA 2GZFA 2VLPA 2GZJA 1EMVA 1BXIA 1AYIA 1MZ8A 2GZEA 2GYKA 1UJZA 3U43A
chains in the Genus database with same CATH superfamily
5EW5E 2K2QA 1VQ5P 2JU2A 2L9FA 4R0MA 3G6EP 2LL8A 3G28A 2WPTA 1Q81Q 1YHQP 3MGEA 2KGEA 3M1MA 2K0DX 1Q86Q 3H47A 2KW2A 3CCLP 3G1GA 2GDYA 1W2BO 1VQKP 4U0FA 1X3OA 2QA4P 2KG6A 1IUQA 2CG5B 4IPYA 2M8NA 2MR7A 4QKOA 1YJNP 1JJ2O 2JAZA 2KOPA 1VQOP 4M0IA 3G1IA 4XFZA 1M74A 1MZ8A 2GDWA 2K5XA 3LMOA 2JBGA 1T8KA 5F2OA 2VLNA 3G71P 1E0HA 4U0CA 3HYBA 5F2NA 3CPWO 4COCA 5BS1A 2MVVA 2PEKA 1N8RQ 4U0BA 3GZMA 3G4SP 2CQ8A 3B5IA 1VQ9P 4GR6A 2EHTA 2CWOA 2VLQA 2QNWA 3U43A 2CGQA 2VLOA 2Z45A 2E1MA 2JGPA 3RG6C 3G26A 1A8OA 5BS2A 3EJDA 4BPFA 4PH1A 1VQ6P 2JQ4A 4DG9A 2K0YA 3G21A 4UHPB 4H2YC 2VLPA 1VQPP 4XFXA 2PY8A 2GZJA 1Q7YQ 4PXHB 2JYLA 2PENA 2X2BA 2PEQA 3DS5A 1DNYA 2N50A 4U0AA 3DS3A 1ZMBA 1A43A 1E6JP 2L22A 2LF4A 2MD9A 2LIWA 1KQSO 5HGLA 1YIJP 5KP7B 2GZIA 2PEOA 3H0DA 2OARA 2KGAA 1KC8Q 1K73Q 4IZ6A 1EOQA 2P9XA 5HVCA 2LPKA 3HZQA 2K94A 2CNRA 2L0QA 2FQ2A 1UJZA 2PNGA 4COPA 1CEIA 2KWLA 2PEIA 3CCRP 1RNIA 4XRQA 1GPJA 1FR2A 1RO0A 3EJEA 3LRYA 3CMAP 2N98A 2KR5A 2GZFA 2KOSA 4BPGA 3RG2A 3G0VA 1RO2A 2EIAA 2JB0A 3CXCO 7CEIA 2MVUA 5HGMA 1IMPA 1L0HA 3CC2P 4H2XC 2KG8A 3CC7P 3DS0A 2FHSC 1VHNA 2FVAA 4PWVB 2JYGA 3G29A 5HGOA 4XROA 2GYKA 3EJBA 2XZ1C 2EFJA 2LOLA 1F80D 2K0XA 3DS2A 2ROQA 2L6EA 3CCMP 2BHVA 5KP6B 4MRTC 2GDXA 3CC4P 3E2DA 2FAEA 3CD6P 2XV6A 3CCSP 2AFDA 2NO8A 1HQBA 2XXMA 3B4QA 3I56P 1QRJA 3CCVP 1GXHA 2KGCA 1D1DA 1Z6MA 4HKGA 2JU1A 3I55P 3DS4A 5CZDB 3GKLC 3Q20A 1VKUA 5EJDA 1BAJA 3CE7A 2Z44A 1GXGA 1QVFO 3DS1A 4CA3A 3NY7B 4QNBA 2GZGA 5HV8A 2M8LA 2VSQA 2FQ1A 2ONTA 5DCKA 2DNWA 2XT1A 4U0DA 2Z46A 2DGYA 2N6ZA 3DTJA 2FVEA 3CMEP 1K8AQ 1ZNVA 2N5HA 2ERHA 4H2WC 1YJ9P 1IMQA 1HY8A 2FADA 2JO0A 2MR8A 1M1KQ 1VQMP 2FACA 3H4EA 1AUMA 2LIUA 3P05A 1EMVA 1YI2P 3WBHA 1M6EX 1S72P 1NQ4A 5I4TG 1VQNP 2MY5A 1VQ8P 2FVFA 5JPAA 1KLPA 2K92A 2KOQA 4WYMA 5KP8B 4U0EA 1QVGO 1VQLP 1VQ4P 3GJNA 4F37A 1M90Q 1YJWP 4XFYA 2EG5A 2AVAA 2GZEA 3OW2O 2KG9A 2QEXP 1KD1Q 4GR2A 1K9MQ 2XZ0D 1M6NA 2KOOA 1VQ7P 2K93A 2PEMA 2LKIA 1NJIQ 2M8PA 1BXIA 2KODA 2KORA 2AFEA 2L4BA 2OTJP 2FQ0A 4PH0A 2BUOA 2N5IA 1L0IA 2OTLP 3NTEA 1UNKA 3GZLA 1DV5A 1YITP 4NEOA 5F2KA 3VRLC 3DPHA 1EIAA 1Q82Q 3CCQP 4BPHA 2AF8A 2MF4A 2M5RA 3CCEP 2PEJA 3CCJP 5HGNA 1ACPA 3CCUP 1OR5A 1AF8A 2KGDA 2LTEA 1AYIA 2LMLA 1K30A 2N6YA 2EHSA
chains in the Genus database with same CATH topology
5EW5E 2JB0A 2K5XA 1CEIA 2NO8A 2VLOA 2JBGA 7CEIA 2GZIA 1GXGA 1ZNVA 2VLNA 1E0HA 2ERHA 2VLQA 1GXHA 1IMPA 1IMQA 2GZGA 1UNKA 1FR2A 2WPTA 4QKOA 3GJNA 3GKLC 4F37A 4UHPB 2K0DX 2JAZA 2GZFA 2VLPA 2GZJA 1EMVA 1BXIA 1AYIA 1MZ8A 2GZEA 2GYKA 1UJZA 3U43A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EW5 E;  2JB0 A;  2K5X A;  1CEI A;  2NO8 A;  2VLO A;  2JBG A;  7CEI A;  2GZI A;  1GXG A;  1ZNV A;  2VLN A;  1E0H A;  2ERH A;  2VLQ A;  1GXH A;  1IMP A;  1IMQ A;  2GZG A;  1UNK A;  1FR2 A;  2WPT A;  4QKO A;  3GJN A;  3GKL C;  4F37 A;  4UHP B;  2K0D X;  2JAZ A;  2GZF A;  2VLP A;  2GZJ A;  1EMV A;  1BXI A;  1AYI A;  1MZ8 A;  2GZE A;  2GYK A;  1UJZ A;  3U43 A; 
#chains in the Genus database with same CATH topology
 5EW5 E;  2K2Q A;  1VQ5 P;  2JU2 A;  2L9F A;  4R0M A;  3G6E P;  2LL8 A;  3G28 A;  2WPT A;  1Q81 Q;  1YHQ P;  3MGE A;  2KGE A;  3M1M A;  2K0D X;  1Q86 Q;  3H47 A;  2KW2 A;  3CCL P;  3G1G A;  2GDY A;  1W2B O;  1VQK P;  4U0F A;  1X3O A;  2QA4 P;  2KG6 A;  1IUQ A;  2CG5 B;  4IPY A;  2M8N A;  2MR7 A;  4QKO A;  1YJN P;  1JJ2 O;  2JAZ A;  2KOP A;  1VQO P;  4M0I A;  3G1I A;  4XFZ A;  1M74 A;  1MZ8 A;  2GDW A;  2K5X A;  3LMO A;  2JBG A;  1T8K A;  5F2O A;  2VLN A;  3G71 P;  1E0H A;  4U0C A;  3HYB A;  5F2N A;  3CPW O;  4COC A;  5BS1 A;  2MVV A;  2PEK A;  1N8R Q;  4U0B A;  3GZM A;  3G4S P;  2CQ8 A;  3B5I A;  1VQ9 P;  4GR6 A;  2EHT A;  2CWO A;  2VLQ A;  2QNW A;  3U43 A;  2CGQ A;  2VLO A;  2Z45 A;  2E1M A;  2JGP A;  3RG6 C;  3G26 A;  1A8O A;  5BS2 A;  3EJD A;  4BPF A;  4PH1 A;  1VQ6 P;  2JQ4 A;  4DG9 A;  2K0Y A;  3G21 A;  4UHP B;  4H2Y C;  2VLP A;  1VQP P;  4XFX A;  2PY8 A;  2GZJ A;  1Q7Y Q;  4PXH B;  2JYL A;  2PEN A;  2X2B A;  2PEQ A;  3DS5 A;  1DNY A;  2N50 A;  4U0A A;  3DS3 A;  1ZMB A;  1A43 A;  1E6J P;  2L22 A;  2LF4 A;  2MD9 A;  2LIW A;  1KQS O;  5HGL A;  1YIJ P;  5KP7 B;  2GZI A;  2PEO A;  3H0D A;  2OAR A;  2KGA A;  1KC8 Q;  1K73 Q;  4IZ6 A;  1EOQ A;  2P9X A;  5HVC A;  2LPK A;  3HZQ A;  2K94 A;  2CNR A;  2L0Q A;  2FQ2 A;  1UJZ A;  2PNG A;  4COP A;  1CEI A;  2KWL A;  2PEI A;  3CCR P;  1RNI A;  4XRQ A;  1GPJ A;  1FR2 A;  1RO0 A;  3EJE A;  3LRY A;  3CMA P;  2N98 A;  2KR5 A;  2GZF A;  2KOS A;  4BPG A;  3RG2 A;  3G0V A;  1RO2 A;  2EIA A;  2JB0 A;  3CXC O;  7CEI A;  2MVU A;  5HGM A;  1IMP A;  1L0H A;  3CC2 P;  4H2X C;  2KG8 A;  3CC7 P;  3DS0 A;  2FHS C;  1VHN A;  2FVA A;  4PWV B;  2JYG A;  3G29 A;  5HGO A;  4XRO A;  2GYK A;  3EJB A;  2XZ1 C;  2EFJ A;  2LOL A;  1F80 D;  2K0X A;  3DS2 A;  2ROQ A;  2L6E A;  3CCM P;  2BHV A;  5KP6 B;  4MRT C;  2GDX A;  3CC4 P;  3E2D A;  2FAE A;  3CD6 P;  2XV6 A;  3CCS P;  2AFD A;  2NO8 A;  1HQB A;  2XXM A;  3B4Q A;  3I56 P;  1QRJ A;  3CCV P;  1GXH A;  2KGC A;  1D1D A;  1Z6M A;  4HKG A;  2JU1 A;  3I55 P;  3DS4 A;  5CZD B;  3GKL C;  3Q20 A;  1VKU A;  5EJD A;  1BAJ A;  3CE7 A;  2Z44 A;  1GXG A;  1QVF O;  3DS1 A;  4CA3 A;  3NY7 B;  4QNB A;  2GZG A;  5HV8 A;  2M8L A;  2VSQ A;  2FQ1 A;  2ONT A;  5DCK A;  2DNW A;  2XT1 A;  4U0D A;  2Z46 A;  2DGY A;  2N6Z A;  3DTJ A;  2FVE A;  3CME P;  1K8A Q;  1ZNV A;  2N5H A;  2ERH A;  4H2W C;  1YJ9 P;  1IMQ A;  1HY8 A;  2FAD A;  2JO0 A;  2MR8 A;  1M1K Q;  1VQM P;  2FAC A;  3H4E A;  1AUM A;  2LIU A;  3P05 A;  1EMV A;  1YI2 P;  3WBH A;  1M6E X;  1S72 P;  1NQ4 A;  5I4T G;  1VQN P;  2MY5 A;  1VQ8 P;  2FVF A;  5JPA A;  1KLP A;  2K92 A;  2KOQ A;  4WYM A;  5KP8 B;  4U0E A;  1QVG O;  1VQL P;  1VQ4 P;  3GJN A;  4F37 A;  1M90 Q;  1YJW P;  4XFY A;  2EG5 A;  2AVA A;  2GZE A;  3OW2 O;  2KG9 A;  2QEX P;  1KD1 Q;  4GR2 A;  1K9M Q;  2XZ0 D;  1M6N A;  2KOO A;  1VQ7 P;  2K93 A;  2PEM A;  2LKI A;  1NJI Q;  2M8P A;  1BXI A;  2KOD A;  2KOR A;  2AFE A;  2L4B A;  2OTJ P;  2FQ0 A;  4PH0 A;  2BUO A;  2N5I A;  1L0I A;  2OTL P;  3NTE A;  1UNK A;  3GZL A;  1DV5 A;  1YIT P;  4NEO A;  5F2K A;  3VRL C;  3DPH A;  1EIA A;  1Q82 Q;  3CCQ P;  4BPH A;  2AF8 A;  2MF4 A;  2M5R A;  3CCE P;  2PEJ A;  3CCJ P;  5HGN A;  1ACP A;  3CCU P;  1OR5 A;  1AF8 A;  2KGD A;  2LTE A;  1AYI A;  2LML A;  1K30 A;  2N6Y A;  2EHS A; 
#chains in the Genus database with same CATH homology
 5EW5 E;  2JB0 A;  2K5X A;  1CEI A;  2NO8 A;  2VLO A;  2JBG A;  7CEI A;  2GZI A;  1GXG A;  1ZNV A;  2VLN A;  1E0H A;  2ERH A;  2VLQ A;  1GXH A;  1IMP A;  1IMQ A;  2GZG A;  1UNK A;  1FR2 A;  2WPT A;  4QKO A;  3GJN A;  3GKL C;  4F37 A;  4UHP B;  2K0D X;  2JAZ A;  2GZF A;  2VLP A;  2GZJ A;  1EMV A;  1BXI A;  1AYI A;  1MZ8 A;  2GZE A;  2GYK A;  1UJZ A;  3U43 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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