2VLQA

F86a mutant of e9 dnase domain in complex with im9
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
84
structure length
84
Chain Sequence
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords COLICIN-E9 IMMUNITY PROTEIN
publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
source organism Escherichia coli
total genus 30
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vlqA00
1UNKA 1UJZA 1IMQA 1BXIA 3GJNA 7CEIA 2GYKA 4F37A 1MZ8A 2JAZA 2K5XA 4UHPB 2JBGA 1ZNVA 2GZIA 2VLQA 2NO8A 3GKLC 1E0HA 1FR2A 1IMPA 2GZGA 1EMVA 2JB0A 2WPTA 2GZFA 2GZJA 2VLPA 4QKOA 2GZEA 5EW5E 1GXGA 2VLNA 1CEIA 2ERHA 2VLOA 1GXHA 3U43A 2K0DX 1AYIA
chains in the Genus database with same CATH superfamily
1K8AQ 2KGEA 2PEMA 2PEQA 5HVCA 2EIAA 2QA4P 2M8NA 3CCEP 2LKIA 4BPGA 2ONTA 3MGEA 1N8RQ 4QKOA 2CQ8A 4WYMA 1E6JP 1KC8Q 3LMOA 2PEOA 1VQPP 3G4SP 3CMEP 1ZMBA 1M74A 1KLPA 5KP7B 2M8PA 2JYGA 3G21A 3VRLC 2M5RA 1AF8A 5BS2A 2DGYA 3DS1A 1T8KA 3EJBA 4COPA 1EIAA 4DG9A 1EOQA 3B4QA 1MZ8A 1VQOP 1VKUA 3CCJP 1A8OA 5HV8A 2KR5A 2AVAA 2JB0A 2L9FA 2Z44A 1YIJP 1RO2A 2KG9A 1AYIA 1YJ9P 2KWLA 2MVVA 2LPKA 2AF8A 3CCMP 5I4TG 4PXHB 3OW2O 2FACA 2KOSA 2JYLA 1OR5A 2MF4A 4R0MA 3DS5A 3CC7P 1QVGO 3G6EP 4XRQA 3U43A 2AFDA 3HZQA 2GDYA 1M1KQ 3CC2P 1UNKA 4XFYA 4CA3A 2QEXP 3G29A 2VSQA 1M6EX 2EG5A 3NTEA 4U0AA 2KGDA 2XT1A 5HGNA 2MD9A 2PENA 1AUMA 2LL8A 2N6ZA 2VLOA 2KW2A 1YJWP 1F80D 3G0VA 3CC4P 3H4EA 1IMQA 1BXIA 2PEJA 2K5XA 1VQLP 4UHPB 2XZ0D 3CCRP 2L6EA 2KGAA 2FQ0A 2CWOA 1D1DA 1NJIQ 2XZ1C 2VLPA 5EW5E 1GXGA 2FVFA 4PWVB 4PH1A 3HYBA 1L0IA 5HGLA 2FVEA 2OTLP 5F2NA 1KQSO 1X3OA 4COCA 3CCLP 5HGOA 4XROA 3CCVP 3I55P 2DNWA 2MVUA 2GZIA 1S72P 1VQ9P 2KOQA 2EHTA 1M6NA 1EMVA 2N98A 2XV6A 2JQ4A 2L4BA 5BS1A 2LTEA 4GR2A 3CMAP 1VQ8P 4BPHA 1KD1Q 4NEOA 4U0DA 2NO8A 2GZGA 1VQ7P 2WPTA 1Q7YQ 4M0IA 3CCUP 3G26A 1GXHA 2EFJA 1A43A 3GJNA 3DTJA 2K94A 4XFZA 3DS0A 3GKLC 5DCKA 4H2WC 2P9XA 1GPJA 4HKGA 2Z46A 2GDWA 4U0FA 3CE7A 3B5IA 2K0DX 3DS4A 2KOPA 3CPWO 7CEIA 1VQKP 4F37A 2JAZA 5JPAA 2CG5B 3G1GA 3CCSP 2PY8A 2VLQA 1FR2A 2LIWA 1IUQA 3CD6P 2BHVA 1Q82Q 3GZLA 1K73Q 3DS2A 2JGPA 3NY7B 1VQMP 2KODA 2QNWA 5F2OA 1VQ6P 1VQ5P 2M8LA 1HQBA 2MY5A 3H0DA 3Q20A 2FADA 4QNBA 1VQNP 5EJDA 3CCQP 1E0HA 2KOOA 2LF4A 5HGMA 4MRTC 1YJNP 2GZEA 2VLNA 1K30A 1VQ4P 3G71P 1YITP 4H2YC 1K9MQ 2L22A 1IMPA 1Q86Q 2K92A 2GZFA 5KP6B 4H2XC 2K2QA 4U0CA 2LOLA 2FVAA 1VHNA 2JO0A 1UJZA 2GDXA 2KG8A 2GYKA 4GR6A 1NQ4A 2KG6A 3G28A 3E2DA 3RG6C 1M90Q 2FAEA 2LIUA 2L0QA 1Q81Q 4IPYA 1YHQP 2N50A 3I56P 1BAJA 2OARA 2ERHA 1ACPA 1HY8A 3H47A 2LMLA 3M1MA 2JU1A 2K0XA 4BPFA 3P05A 2CNRA 2ROQA 2CGQA 2E1MA 2PNGA 2GZJA 2FQ1A 2MR7A 1JJ2O 2EHSA 2KORA 1RNIA 4PH0A 2AFEA 2KGCA 2N6YA 2X2BA 4U0EA 4IZ6A 3G1IA 2PEIA 1RO0A 1DV5A 1QRJA 2OTJP 2N5IA 2K93A 1W2BO 3EJEA 4U0BA 2PEKA 3DS3A 3GZMA 2N5HA 1CEIA 3LRYA 5CZDB 5KP8B 2FHSC 1DNYA 2XXMA 2FQ2A 1QVFO 3DPHA 5F2KA 2JBGA 2JU2A 4XFXA 1ZNVA 1L0HA 2MR8A 2BUOA 3CXCO 3EJDA 1Z6MA 1YI2P 2K0YA 3RG2A 3WBHA 2Z45A
chains in the Genus database with same CATH topology
1UNKA 1UJZA 1IMQA 1BXIA 3GJNA 7CEIA 2GYKA 4F37A 1MZ8A 2JAZA 2K5XA 4UHPB 2JBGA 1ZNVA 2GZIA 2VLQA 2NO8A 3GKLC 1E0HA 1FR2A 1IMPA 2GZGA 1EMVA 2JB0A 2WPTA 2GZFA 2GZJA 2VLPA 4QKOA 2GZEA 5EW5E 1GXGA 2VLNA 1CEIA 2ERHA 2VLOA 1GXHA 3U43A 2K0DX 1AYIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UNK A;  1UJZ A;  1IMQ A;  1BXI A;  3GJN A;  7CEI A;  2GYK A;  4F37 A;  1MZ8 A;  2JAZ A;  2K5X A;  4UHP B;  2JBG A;  1ZNV A;  2GZI A;  2VLQ A;  2NO8 A;  3GKL C;  1E0H A;  1FR2 A;  1IMP A;  2GZG A;  1EMV A;  2JB0 A;  2WPT A;  2GZF A;  2GZJ A;  2VLP A;  4QKO A;  2GZE A;  5EW5 E;  1GXG A;  2VLN A;  1CEI A;  2ERH A;  2VLO A;  1GXH A;  3U43 A;  2K0D X;  1AYI A; 
#chains in the Genus database with same CATH topology
 1K8A Q;  2KGE A;  2PEM A;  2PEQ A;  5HVC A;  2EIA A;  2QA4 P;  2M8N A;  3CCE P;  2LKI A;  4BPG A;  2ONT A;  3MGE A;  1N8R Q;  4QKO A;  2CQ8 A;  4WYM A;  1E6J P;  1KC8 Q;  3LMO A;  2PEO A;  1VQP P;  3G4S P;  3CME P;  1ZMB A;  1M74 A;  1KLP A;  5KP7 B;  2M8P A;  2JYG A;  3G21 A;  3VRL C;  2M5R A;  1AF8 A;  5BS2 A;  2DGY A;  3DS1 A;  1T8K A;  3EJB A;  4COP A;  1EIA A;  4DG9 A;  1EOQ A;  3B4Q A;  1MZ8 A;  1VQO P;  1VKU A;  3CCJ P;  1A8O A;  5HV8 A;  2KR5 A;  2AVA A;  2JB0 A;  2L9F A;  2Z44 A;  1YIJ P;  1RO2 A;  2KG9 A;  1AYI A;  1YJ9 P;  2KWL A;  2MVV A;  2LPK A;  2AF8 A;  3CCM P;  5I4T G;  4PXH B;  3OW2 O;  2FAC A;  2KOS A;  2JYL A;  1OR5 A;  2MF4 A;  4R0M A;  3DS5 A;  3CC7 P;  1QVG O;  3G6E P;  4XRQ A;  3U43 A;  2AFD A;  3HZQ A;  2GDY A;  1M1K Q;  3CC2 P;  1UNK A;  4XFY A;  4CA3 A;  2QEX P;  3G29 A;  2VSQ A;  1M6E X;  2EG5 A;  3NTE A;  4U0A A;  2KGD A;  2XT1 A;  5HGN A;  2MD9 A;  2PEN A;  1AUM A;  2LL8 A;  2N6Z A;  2VLO A;  2KW2 A;  1YJW P;  1F80 D;  3G0V A;  3CC4 P;  3H4E A;  1IMQ A;  1BXI A;  2PEJ A;  2K5X A;  1VQL P;  4UHP B;  2XZ0 D;  3CCR P;  2L6E A;  2KGA A;  2FQ0 A;  2CWO A;  1D1D A;  1NJI Q;  2XZ1 C;  2VLP A;  5EW5 E;  1GXG A;  2FVF A;  4PWV B;  4PH1 A;  3HYB A;  1L0I A;  5HGL A;  2FVE A;  2OTL P;  5F2N A;  1KQS O;  1X3O A;  4COC A;  3CCL P;  5HGO A;  4XRO A;  3CCV P;  3I55 P;  2DNW A;  2MVU A;  2GZI A;  1S72 P;  1VQ9 P;  2KOQ A;  2EHT A;  1M6N A;  1EMV A;  2N98 A;  2XV6 A;  2JQ4 A;  2L4B A;  5BS1 A;  2LTE A;  4GR2 A;  3CMA P;  1VQ8 P;  4BPH A;  1KD1 Q;  4NEO A;  4U0D A;  2NO8 A;  2GZG A;  1VQ7 P;  2WPT A;  1Q7Y Q;  4M0I A;  3CCU P;  3G26 A;  1GXH A;  2EFJ A;  1A43 A;  3GJN A;  3DTJ A;  2K94 A;  4XFZ A;  3DS0 A;  3GKL C;  5DCK A;  4H2W C;  2P9X A;  1GPJ A;  4HKG A;  2Z46 A;  2GDW A;  4U0F A;  3CE7 A;  3B5I A;  2K0D X;  3DS4 A;  2KOP A;  3CPW O;  7CEI A;  1VQK P;  4F37 A;  2JAZ A;  5JPA A;  2CG5 B;  3G1G A;  3CCS P;  2PY8 A;  2VLQ A;  1FR2 A;  2LIW A;  1IUQ A;  3CD6 P;  2BHV A;  1Q82 Q;  3GZL A;  1K73 Q;  3DS2 A;  2JGP A;  3NY7 B;  1VQM P;  2KOD A;  2QNW A;  5F2O A;  1VQ6 P;  1VQ5 P;  2M8L A;  1HQB A;  2MY5 A;  3H0D A;  3Q20 A;  2FAD A;  4QNB A;  1VQN P;  5EJD A;  3CCQ P;  1E0H A;  2KOO A;  2LF4 A;  5HGM A;  4MRT C;  1YJN P;  2GZE A;  2VLN A;  1K30 A;  1VQ4 P;  3G71 P;  1YIT P;  4H2Y C;  1K9M Q;  2L22 A;  1IMP A;  1Q86 Q;  2K92 A;  2GZF A;  5KP6 B;  4H2X C;  2K2Q A;  4U0C A;  2LOL A;  2FVA A;  1VHN A;  2JO0 A;  1UJZ A;  2GDX A;  2KG8 A;  2GYK A;  4GR6 A;  1NQ4 A;  2KG6 A;  3G28 A;  3E2D A;  3RG6 C;  1M90 Q;  2FAE A;  2LIU A;  2L0Q A;  1Q81 Q;  4IPY A;  1YHQ P;  2N50 A;  3I56 P;  1BAJ A;  2OAR A;  2ERH A;  1ACP A;  1HY8 A;  3H47 A;  2LML A;  3M1M A;  2JU1 A;  2K0X A;  4BPF A;  3P05 A;  2CNR A;  2ROQ A;  2CGQ A;  2E1M A;  2PNG A;  2GZJ A;  2FQ1 A;  2MR7 A;  1JJ2 O;  2EHS A;  2KOR A;  1RNI A;  4PH0 A;  2AFE A;  2KGC A;  2N6Y A;  2X2B A;  4U0E A;  4IZ6 A;  3G1I A;  2PEI A;  1RO0 A;  1DV5 A;  1QRJ A;  2OTJ P;  2N5I A;  2K93 A;  1W2B O;  3EJE A;  4U0B A;  2PEK A;  3DS3 A;  3GZM A;  2N5H A;  1CEI A;  3LRY A;  5CZD B;  5KP8 B;  2FHS C;  1DNY A;  2XXM A;  2FQ2 A;  1QVF O;  3DPH A;  5F2K A;  2JBG A;  2JU2 A;  4XFX A;  1ZNV A;  1L0H A;  2MR8 A;  2BUO A;  3CXC O;  3EJD A;  1Z6M A;  1YI2 P;  2K0Y A;  3RG2 A;  3WBH A;  2Z45 A; 
#chains in the Genus database with same CATH homology
 1UNK A;  1UJZ A;  1IMQ A;  1BXI A;  3GJN A;  7CEI A;  2GYK A;  4F37 A;  1MZ8 A;  2JAZ A;  2K5X A;  4UHP B;  2JBG A;  1ZNV A;  2GZI A;  2VLQ A;  2NO8 A;  3GKL C;  1E0H A;  1FR2 A;  1IMP A;  2GZG A;  1EMV A;  2JB0 A;  2WPT A;  2GZF A;  2GZJ A;  2VLP A;  4QKO A;  2GZE A;  5EW5 E;  1GXG A;  2VLN A;  1CEI A;  2ERH A;  2VLO A;  1GXH A;  3U43 A;  2K0D X;  1AYI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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