2VLQA

F86a mutant of e9 dnase domain in complex with im9
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
84
structure length
84
Chain Sequence
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein binding
molecule keywords COLICIN-E9 IMMUNITY PROTEIN
total genus 30
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2008-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2vlqA00
1E0HA 2K0DX 4QKOA 1FR2A 2VLOA 3GKLC 1AYIA 2ERHA 2GZGA 2VLPA 4UHPB 7CEIA 1CEIA 1MZ8A 2GZJA 1EMVA 2VLNA 1IMQA 2GYKA 1GXHA 3GJNA 1UJZA 2JBGA 2GZFA 2WPTA 5EW5E 2GZEA 2GZIA 2K5XA 3U43A 2NO8A 1GXGA 2VLQA 1UNKA 4F37A 1IMPA 1ZNVA 2JAZA 2JB0A 1BXIA
chains in the Genus database with same CATH superfamily
3RG2A 5HGNA 4PH1A 2GZGA 4XFYA 3G1GA 1NQ4A 1VHNA 2QNWA 2VLNA 4BPGA 1M1KQ 4BPFA 1E6JP 3DS3A 2GDXA 3CCUP 1YHQP 2K94A 5F2OA 1VQPP 2N98A 2K0YA 2DGYA 5HGOA 4DG9A 4PH0A 1KC8Q 2KOSA 2LIWA 2KGDA 4QKOA 1FR2A 2PEJA 2LF4A 3G0VA 2KODA 2E1MA 1EIAA 1HY8A 2PNGA 3DS1A 1IMPA 2ROQA 4M0IA 2CQ8A 2KGAA 4UHPB 2LTEA 2Z45A 5HV8A 1MZ8A 3OW2O 2N6ZA 1EOQA 5F2NA 2FVAA 2FQ0A 2KG8A 2XZ0D 2XT1A 2CGQA 4PWVB 4QNBA 1AF8A 4U0FA 2MR7A 4GR2A 3G71P 5F2KA 2KOPA 2FADA 1YJWP 2GZIA 3U43A 5I4TG 2N5HA 2K93A 2N6YA 3VRLC 4F37A 2JB0A 3CPWO 4COPA 1HQBA 2PENA 5BS2A 3CCLP 4COCA 5DCKA 1YITP 2N5IA 2EHTA 2K92A 1KLPA 3E2DA 3G1IA 4U0CA 3DTJA 4U0EA 1Q86Q 2L0QA 3HYBA 5EW5E 3G4SP 1L0HA 2XZ1C 5BS1A 1N8RQ 1VKUA 1Q82Q 1A43A 2GZJA 2JU1A 1Z6MA 2LOLA 1IMQA 2MY5A 1UJZA 3CC2P 2MVVA 3I56P 3EJBA 2LMLA 3B4QA 3DS5A 2PEQA 2PEOA 2FVFA 2ONTA 2K0XA 2XXMA 1QRJA 2BHVA 1YJ9P 1AYIA 2PY8A 5HGLA 3H4EA 1KD1Q 1VQ9P 2PEMA 3NTEA 2Z46A 1VQLP 4XFXA 2OARA 3EJEA 2JAZA 1VQNP 3G21A 1GXHA 3H47A 2LIUA 2VLPA 1QVGO 2JU2A 1EMVA 2DNWA 2KG9A 2FACA 3Q20A 3M1MA 2VLQA 1UNKA 2MF4A 1ACPA 2MD9A 3CE7A 1S72P 2PEKA 3CC7P 1NJIQ 2OTJP 2PEIA 2K5XA 3MGEA 2AFDA 1VQ4P 1VQ7P 2KOQA 2LL8A 1E0HA 2K0DX 2KOOA 2VLOA 5JPAA 3CMAP 3CCEP 2M5RA 3CD6P 2KW2A 2GZEA 2CG5B 1YJNP 2L22A 3DS4A 3DPHA 3G28A 3I55P 4R0MA 1M74A 1YI2P 1K30A 1QVFO 1GPJA 2KR5A 5KP6B 2JYLA 2AVAA 1RO0A 1AUMA 1BAJA 1DV5A 4U0BA 2JGPA 2KG6A 2LPKA 2KORA 1K9MQ 2FQ1A 1VQ8P 1VQMP 3B5IA 1K73Q 5EJDA 2KWLA 2AF8A 2N50A 2JYGA 4XRQA 4GR6A 2EFJA 1RO2A 1Q7YQ 3LRYA 2M8LA 3GKLC 2ERHA 2M8NA 4IZ6A 1CEIA 5KP7B 2BUOA 3LMOA 3GJNA 2AFEA 2JBGA 1T8KA 2FAEA 2FVEA 2KGCA 2EIAA 2XV6A 2P9XA 1K8AQ 2JO0A 3CCQP 2L6EA 1BXIA 3CCVP 3NY7B 2Z44A 3G29A 3DS0A 1M90Q 2CNRA 1X3OA 2EHSA 1KQSO 2WPTA 3CC4P 3CXCO 3G26A 1ZNVA 3H0DA 4H2YC 3CCMP 4WYMA 3CMEP 1OR5A 4PXHB 2QEXP 1ZMBA 1VQOP 2KGEA 2FHSC 2VSQA 4BPHA 1YIJP 3CCSP 1IUQA 2GYKA 2MR8A 2MVUA 1F80D 1M6NA 1W2BO 2OTLP 2GZFA 1VQ5P 2L9FA 1GXGA 4H2WC 4U0DA 5KP8B 1VQ6P 3HZQA 1JJ2O 3GZLA 2GDWA 4HKGA 4NEOA 2JQ4A 5CZDB 5HGMA 3P05A 3CCJP 2EG5A 3GZMA 3EJDA 4XROA 1D1DA 2K2QA 1VQKP 2NO8A 2GDYA 1A8OA 3G6EP 2LKIA 2QA4P 2L4BA 1DNYA 7CEIA 3DS2A 2M8PA 1Q81Q 1M6EX 2FQ2A 1RNIA 4H2XC 4CA3A 2X2BA 3RG6C 4MRTC 3WBHA 3CCRP 1L0IA 4XFZA 2CWOA 5HVCA 4IPYA 4U0AA
chains in the Genus database with same CATH topology
1E0HA 2K0DX 4QKOA 1FR2A 2VLOA 3GKLC 1AYIA 2ERHA 2GZGA 2VLPA 4UHPB 7CEIA 1CEIA 1MZ8A 2GZJA 1EMVA 2VLNA 1IMQA 2GYKA 1GXHA 3GJNA 1UJZA 2JBGA 2GZFA 2WPTA 5EW5E 2GZEA 2GZIA 2K5XA 3U43A 2NO8A 1GXGA 2VLQA 1UNKA 4F37A 1IMPA 1ZNVA 2JAZA 2JB0A 1BXIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E0H A;  2K0D X;  4QKO A;  1FR2 A;  2VLO A;  3GKL C;  1AYI A;  2ERH A;  2GZG A;  2VLP A;  4UHP B;  7CEI A;  1CEI A;  1MZ8 A;  2GZJ A;  1EMV A;  2VLN A;  1IMQ A;  2GYK A;  1GXH A;  3GJN A;  1UJZ A;  2JBG A;  2GZF A;  2WPT A;  5EW5 E;  2GZE A;  2GZI A;  2K5X A;  3U43 A;  2NO8 A;  1GXG A;  2VLQ A;  1UNK A;  4F37 A;  1IMP A;  1ZNV A;  2JAZ A;  2JB0 A;  1BXI A; 
#chains in the Genus database with same CATH topology
 3RG2 A;  5HGN A;  4PH1 A;  2GZG A;  4XFY A;  3G1G A;  1NQ4 A;  1VHN A;  2QNW A;  2VLN A;  4BPG A;  1M1K Q;  4BPF A;  1E6J P;  3DS3 A;  2GDX A;  3CCU P;  1YHQ P;  2K94 A;  5F2O A;  1VQP P;  2N98 A;  2K0Y A;  2DGY A;  5HGO A;  4DG9 A;  4PH0 A;  1KC8 Q;  2KOS A;  2LIW A;  2KGD A;  4QKO A;  1FR2 A;  2PEJ A;  2LF4 A;  3G0V A;  2KOD A;  2E1M A;  1EIA A;  1HY8 A;  2PNG A;  3DS1 A;  1IMP A;  2ROQ A;  4M0I A;  2CQ8 A;  2KGA A;  4UHP B;  2LTE A;  2Z45 A;  5HV8 A;  1MZ8 A;  3OW2 O;  2N6Z A;  1EOQ A;  5F2N A;  2FVA A;  2FQ0 A;  2KG8 A;  2XZ0 D;  2XT1 A;  2CGQ A;  4PWV B;  4QNB A;  1AF8 A;  4U0F A;  2MR7 A;  4GR2 A;  3G71 P;  5F2K A;  2KOP A;  2FAD A;  1YJW P;  2GZI A;  3U43 A;  5I4T G;  2N5H A;  2K93 A;  2N6Y A;  3VRL C;  4F37 A;  2JB0 A;  3CPW O;  4COP A;  1HQB A;  2PEN A;  5BS2 A;  3CCL P;  4COC A;  5DCK A;  1YIT P;  2N5I A;  2EHT A;  2K92 A;  1KLP A;  3E2D A;  3G1I A;  4U0C A;  3DTJ A;  4U0E A;  1Q86 Q;  2L0Q A;  3HYB A;  5EW5 E;  3G4S P;  1L0H A;  2XZ1 C;  5BS1 A;  1N8R Q;  1VKU A;  1Q82 Q;  1A43 A;  2GZJ A;  2JU1 A;  1Z6M A;  2LOL A;  1IMQ A;  2MY5 A;  1UJZ A;  3CC2 P;  2MVV A;  3I56 P;  3EJB A;  2LML A;  3B4Q A;  3DS5 A;  2PEQ A;  2PEO A;  2FVF A;  2ONT A;  2K0X A;  2XXM A;  1QRJ A;  2BHV A;  1YJ9 P;  1AYI A;  2PY8 A;  5HGL A;  3H4E A;  1KD1 Q;  1VQ9 P;  2PEM A;  3NTE A;  2Z46 A;  1VQL P;  4XFX A;  2OAR A;  3EJE A;  2JAZ A;  1VQN P;  3G21 A;  1GXH A;  3H47 A;  2LIU A;  2VLP A;  1QVG O;  2JU2 A;  1EMV A;  2DNW A;  2KG9 A;  2FAC A;  3Q20 A;  3M1M A;  2VLQ A;  1UNK A;  2MF4 A;  1ACP A;  2MD9 A;  3CE7 A;  1S72 P;  2PEK A;  3CC7 P;  1NJI Q;  2OTJ P;  2PEI A;  2K5X A;  3MGE A;  2AFD A;  1VQ4 P;  1VQ7 P;  2KOQ A;  2LL8 A;  1E0H A;  2K0D X;  2KOO A;  2VLO A;  5JPA A;  3CMA P;  3CCE P;  2M5R A;  3CD6 P;  2KW2 A;  2GZE A;  2CG5 B;  1YJN P;  2L22 A;  3DS4 A;  3DPH A;  3G28 A;  3I55 P;  4R0M A;  1M74 A;  1YI2 P;  1K30 A;  1QVF O;  1GPJ A;  2KR5 A;  5KP6 B;  2JYL A;  2AVA A;  1RO0 A;  1AUM A;  1BAJ A;  1DV5 A;  4U0B A;  2JGP A;  2KG6 A;  2LPK A;  2KOR A;  1K9M Q;  2FQ1 A;  1VQ8 P;  1VQM P;  3B5I A;  1K73 Q;  5EJD A;  2KWL A;  2AF8 A;  2N50 A;  2JYG A;  4XRQ A;  4GR6 A;  2EFJ A;  1RO2 A;  1Q7Y Q;  3LRY A;  2M8L A;  3GKL C;  2ERH A;  2M8N A;  4IZ6 A;  1CEI A;  5KP7 B;  2BUO A;  3LMO A;  3GJN A;  2AFE A;  2JBG A;  1T8K A;  2FAE A;  2FVE A;  2KGC A;  2EIA A;  2XV6 A;  2P9X A;  1K8A Q;  2JO0 A;  3CCQ P;  2L6E A;  1BXI A;  3CCV P;  3NY7 B;  2Z44 A;  3G29 A;  3DS0 A;  1M90 Q;  2CNR A;  1X3O A;  2EHS A;  1KQS O;  2WPT A;  3CC4 P;  3CXC O;  3G26 A;  1ZNV A;  3H0D A;  4H2Y C;  3CCM P;  4WYM A;  3CME P;  1OR5 A;  4PXH B;  2QEX P;  1ZMB A;  1VQO P;  2KGE A;  2FHS C;  2VSQ A;  4BPH A;  1YIJ P;  3CCS P;  1IUQ A;  2GYK A;  2MR8 A;  2MVU A;  1F80 D;  1M6N A;  1W2B O;  2OTL P;  2GZF A;  1VQ5 P;  2L9F A;  1GXG A;  4H2W C;  4U0D A;  5KP8 B;  1VQ6 P;  3HZQ A;  1JJ2 O;  3GZL A;  2GDW A;  4HKG A;  4NEO A;  2JQ4 A;  5CZD B;  5HGM A;  3P05 A;  3CCJ P;  2EG5 A;  3GZM A;  3EJD A;  4XRO A;  1D1D A;  2K2Q A;  1VQK P;  2NO8 A;  2GDY A;  1A8O A;  3G6E P;  2LKI A;  2QA4 P;  2L4B A;  1DNY A;  7CEI A;  3DS2 A;  2M8P A;  1Q81 Q;  1M6E X;  2FQ2 A;  1RNI A;  4H2X C;  4CA3 A;  2X2B A;  3RG6 C;  4MRT C;  3WBH A;  3CCR P;  1L0I A;  4XFZ A;  2CWO A;  5HVC A;  4IPY A;  4U0A A; 
#chains in the Genus database with same CATH homology
 1E0H A;  2K0D X;  4QKO A;  1FR2 A;  2VLO A;  3GKL C;  1AYI A;  2ERH A;  2GZG A;  2VLP A;  4UHP B;  7CEI A;  1CEI A;  1MZ8 A;  2GZJ A;  1EMV A;  2VLN A;  1IMQ A;  2GYK A;  1GXH A;  3GJN A;  1UJZ A;  2JBG A;  2GZF A;  2WPT A;  5EW5 E;  2GZE A;  2GZI A;  2K5X A;  3U43 A;  2NO8 A;  1GXG A;  2VLQ A;  1UNK A;  4F37 A;  1IMP A;  1ZNV A;  2JAZ A;  2JB0 A;  1BXI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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