2VNLA

Mutant y108wdel of the headbinding domain of phage p22 tailspike c- terminally fused to isoleucine zipper piigcn4 (chimera ii)
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
147
structure length
147
Chain Sequence
TANVVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKWDPDQYSIEADKKFKQIEDKIEEILSKIYHIENEIARIKKLIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords BIFUNCTIONAL TAIL PROTEIN, PIIGCN4
publication title Bacteriophage P22 Tailspike: Structure of the Complete Protein and Function of the Interdomain Linker
pubmed doi rcsb
source organism Enterobacteria phage p22
total genus 35
structure length 147
sequence length 147
ec nomenclature
pdb deposition date 2008-02-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.14.10 Mainly Beta Beta Complex Tailspike Protein; Chain Phage P22 tailspike-like, N-terminal domain 2vnlA01
2VNLA 2XC1A 1LKTA 2VKYB
chains in the Genus database with same CATH superfamily
2VNLA 2XC1A 1LKTA 2VKYB
chains in the Genus database with same CATH topology
2VNLA 2XC1A 1LKTA 2VKYB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VNL A;  2XC1 A;  1LKT A;  2VKY B; 
#chains in the Genus database with same CATH topology
 2VNL A;  2XC1 A;  1LKT A;  2VKY B; 
#chains in the Genus database with same CATH homology
 2VNL A;  2XC1 A;  1LKT A;  2VKY B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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