2VPAA

High resolution crystal structure of the antibiotic resistance protein nima from deinococcus radiodurans
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NIMA-RELATED PROTEIN
publication title High-Resolution Structure of the Antibiotic Resistance Protein Nima from Deinococcus Radiodurans.
pubmed doi rcsb
source organism Deinococcus radiodurans
total genus 47
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2008-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2vpaA00
3H96A 3HMZA 2NR4A 3U0IA 3ZOEA 3K86A 1T9MA 1G76A 3IN6A 4Y9IA 2FURA 2RE7A 4YWNA 4R82A 1I0RA 1YLNA 3BPKA 4HMTA 4QVBA 3KYFA 1USFA 3R5LA 3K87A 2ECRA 3RH7A 2D5MA 1W3PA 2I51A 5JABA 3BA3A 1NRGA 2HQ9A 3R5PA 3K88A 3R5WA 1JNWA 3R5ZA 4HMVA 3CP3A 4YBNA 3F7EA 3A6RA 4F07A 1I0SA 1W3RA 2VPAA 2A2JA 4XHYA 3ZOCA 3B5MA 2ECUA 2HQ7A 3AMFA 2D38A 1WLIA 1WV4A 3U35A 2ARZA 4Z85A 1W9AA 3TGVA 1DNLA 2RDEA 3GASA 3ZOGA 1TY9A 1W3QA 1XHNA 4XJ2A 2QCKA 5CHEC 3A6QA 2IABA 4HMSA 5ESCA 3R5RA 3VY2A 3ZODA 3KYGA 2Q9KA 1XXOA 2GJGA 2OL5A 3DB0A 3ZOHA 3CB0A 2D37A 2HTDA 2X1JA 3AWHA 1G78A 2ASFA 2ED4A 1USCA 2D36A 2AQ6A 2R6VA 1YOAA 2OU5A 2PTFA 2FHQA 3VYAA 3PFTA 3SWJA 3FGEA 4N7RC 2HHZA 3FKHA 2X1KA 4ZKYA 3U34A 3A20A 4HX6A 1W3OA 4L82A 3ZOFA 4HMWA 2QEAA 3NFWA 1G79A 3HY8A 2I02A 3VY5A 2IG6A 1RZ1A 1WGBA 1RZ0A 5BNCA 2E83A 1EJEA 1VL7A 2HTIA 5CHOA 2R0XA 1RFEA 1Y30A 1G77A 3BNKA 3DMBA 4HMXA 1AXJA 3U5WA 4IRAA 1FLMA 1WLKA 1CI0A 3E4VA 3DNHA 2FG9A 4HMUA 3EC6A 3R5YA 2IMLA
chains in the Genus database with same CATH superfamily
3H96A 3HMZA 2NR4A 4HKHA 3U0IA 3ZOEA 3K86A 1T9MA 1G76A 3IN6A 4Y9IA 2FURA 2RE7A 4YWNA 4R82A 1I0RA 1YLNA 3BPKA 3EAAA 4HMTA 4QVBA 3KYFA 1USFA 3R5LA 3K87A 2ECRA 3RH7A 2D5MA 1W3PA 2I51A 5JABA 3BA3A 1NRGA 2HQ9A 3R5PA 3K88A 3R5WA 1JNWA 3R5ZA 4HMVA 3CP3A 2L1TA 4YBNA 3F7EA 3A6RA 4F07A 1I0SA 1W3RA 2VPAA 2A2JA 4XHYA 3ZOCA 3B5MA 2ECUA 2HQ7A 3AMFA 2D38A 1WLIA 1WV4A 3U35A 2ARZA 4Z85A 1W9AA 3TGVA 1DNLA 2K4QA 2RDEA 3GASA 3ZOGA 1TY9A 1W3QA 1XHNA 4XJ2A 2QCKA 5CHEC 3A6QA 2IABA 4HMSA 5ESCA 3V4HA 3R5RA 3VY2A 3ZODA 3KYGA 2Q9KA 1XXOA 2GJGA 2OL5A 3DB0A 3ZOHA 3CB0A 2D37A 2HTDA 2X1JA 3AWHA 1G78A 2ASFA 2ED4A 4MTKA 1USCA 2D36A 2AQ6A 2R6VA 1YOAA 2OU5A 2PTFA 2FHQA 3VYAA 3PFTA 3SWJA 3FGEA 4N7RC 2HHZA 3FKHA 2X1KA 4ZKYA 4TV4A 3U34A 3A20A 4HX6A 1W3OA 4L82A 3ZOFA 4HMWA 2QEAA 3NFWA 1G79A 3HY8A 2I02A 3VY5A 2IG6A 1RZ1A 1WGBA 1RZ0A 5BNCA 2E83A 2GUJA 4W64A 1EJEA 1VL7A 2HTIA 5CHOA 4UHVA 2R0XA 1RFEA 1Y30A 2P5ZX 1G77A 3BNKA 3DMBA 1Y12A 4HMXA 1AXJA 3HE1A 3U5WA 4IRAA 1FLMA 1WLKA 1CI0A 3E4VA 3DNHA 2FG9A 4HMUA 3EC6A 3R5YA 2IMLA
chains in the Genus database with same CATH topology
3H96A 3HMZA 2NR4A 3U0IA 3ZOEA 3K86A 1T9MA 1G76A 3IN6A 4Y9IA 2FURA 2RE7A 4YWNA 4R82A 1I0RA 1YLNA 3BPKA 4HMTA 4QVBA 3KYFA 1USFA 3R5LA 3K87A 2ECRA 3RH7A 2D5MA 1W3PA 2I51A 5JABA 3BA3A 1NRGA 2HQ9A 3R5PA 3K88A 3R5WA 1JNWA 3R5ZA 4HMVA 3CP3A 4YBNA 3F7EA 3A6RA 4F07A 1I0SA 1W3RA 2VPAA 2A2JA 4XHYA 3ZOCA 3B5MA 2ECUA 2HQ7A 3AMFA 2D38A 1WLIA 1WV4A 3U35A 2ARZA 4Z85A 1W9AA 3TGVA 1DNLA 2RDEA 3GASA 3ZOGA 1TY9A 1W3QA 1XHNA 4XJ2A 2QCKA 5CHEC 3A6QA 2IABA 4HMSA 5ESCA 3R5RA 3VY2A 3ZODA 3KYGA 2Q9KA 1XXOA 2GJGA 2OL5A 3DB0A 3ZOHA 3CB0A 2D37A 2HTDA 2X1JA 3AWHA 1G78A 2ASFA 2ED4A 1USCA 2D36A 2AQ6A 2R6VA 1YOAA 2OU5A 2PTFA 2FHQA 3VYAA 3PFTA 3SWJA 3FGEA 4N7RC 2HHZA 3FKHA 2X1KA 4ZKYA 3U34A 3A20A 4HX6A 1W3OA 4L82A 3ZOFA 4HMWA 2QEAA 3NFWA 1G79A 3HY8A 2I02A 3VY5A 2IG6A 1RZ1A 1WGBA 1RZ0A 5BNCA 2E83A 1EJEA 1VL7A 2HTIA 5CHOA 2R0XA 1RFEA 1Y30A 1G77A 3BNKA 3DMBA 4HMXA 1AXJA 3U5WA 4IRAA 1FLMA 1WLKA 1CI0A 3E4VA 3DNHA 2FG9A 4HMUA 3EC6A 3R5YA 2IMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H96 A;  3HMZ A;  2NR4 A;  3U0I A;  3ZOE A;  3K86 A;  1T9M A;  1G76 A;  3IN6 A;  4Y9I A;  2FUR A;  2RE7 A;  4YWN A;  4R82 A;  1I0R A;  1YLN A;  3BPK A;  4HMT A;  4QVB A;  3KYF A;  1USF A;  3R5L A;  3K87 A;  2ECR A;  3RH7 A;  2D5M A;  1W3P A;  2I51 A;  5JAB A;  3BA3 A;  1NRG A;  2HQ9 A;  3R5P A;  3K88 A;  3R5W A;  1JNW A;  3R5Z A;  4HMV A;  3CP3 A;  4YBN A;  3F7E A;  3A6R A;  4F07 A;  1I0S A;  1W3R A;  2VPA A;  2A2J A;  4XHY A;  3ZOC A;  3B5M A;  2ECU A;  2HQ7 A;  3AMF A;  2D38 A;  1WLI A;  1WV4 A;  3U35 A;  2ARZ A;  4Z85 A;  1W9A A;  3TGV A;  1DNL A;  2RDE A;  3GAS A;  3ZOG A;  1TY9 A;  1W3Q A;  1XHN A;  4XJ2 A;  2QCK A;  5CHE C;  3A6Q A;  2IAB A;  4HMS A;  5ESC A;  3R5R A;  3VY2 A;  3ZOD A;  3KYG A;  2Q9K A;  1XXO A;  2GJG A;  2OL5 A;  3DB0 A;  3ZOH A;  3CB0 A;  2D37 A;  2HTD A;  2X1J A;  3AWH A;  1G78 A;  2ASF A;  2ED4 A;  1USC A;  2D36 A;  2AQ6 A;  2R6V A;  1YOA A;  2OU5 A;  2PTF A;  2FHQ A;  3VYA A;  3PFT A;  3SWJ A;  3FGE A;  4N7R C;  2HHZ A;  3FKH A;  2X1K A;  4ZKY A;  3U34 A;  3A20 A;  4HX6 A;  1W3O A;  4L82 A;  3ZOF A;  4HMW A;  2QEA A;  3NFW A;  1G79 A;  3HY8 A;  2I02 A;  3VY5 A;  2IG6 A;  1RZ1 A;  1WGB A;  1RZ0 A;  5BNC A;  2E83 A;  1EJE A;  1VL7 A;  2HTI A;  5CHO A;  2R0X A;  1RFE A;  1Y30 A;  1G77 A;  3BNK A;  3DMB A;  4HMX A;  1AXJ A;  3U5W A;  4IRA A;  1FLM A;  1WLK A;  1CI0 A;  3E4V A;  3DNH A;  2FG9 A;  4HMU A;  3EC6 A;  3R5Y A;  2IML A; 
#chains in the Genus database with same CATH topology
 3H96 A;  3HMZ A;  2NR4 A;  4HKH A;  3U0I A;  3ZOE A;  3K86 A;  1T9M A;  1G76 A;  3IN6 A;  4Y9I A;  2FUR A;  2RE7 A;  4YWN A;  4R82 A;  1I0R A;  1YLN A;  3BPK A;  3EAA A;  4HMT A;  4QVB A;  3KYF A;  1USF A;  3R5L A;  3K87 A;  2ECR A;  3RH7 A;  2D5M A;  1W3P A;  2I51 A;  5JAB A;  3BA3 A;  1NRG A;  2HQ9 A;  3R5P A;  3K88 A;  3R5W A;  1JNW A;  3R5Z A;  4HMV A;  3CP3 A;  2L1T A;  4YBN A;  3F7E A;  3A6R A;  4F07 A;  1I0S A;  1W3R A;  2VPA A;  2A2J A;  4XHY A;  3ZOC A;  3B5M A;  2ECU A;  2HQ7 A;  3AMF A;  2D38 A;  1WLI A;  1WV4 A;  3U35 A;  2ARZ A;  4Z85 A;  1W9A A;  3TGV A;  1DNL A;  2K4Q A;  2RDE A;  3GAS A;  3ZOG A;  1TY9 A;  1W3Q A;  1XHN A;  4XJ2 A;  2QCK A;  5CHE C;  3A6Q A;  2IAB A;  4HMS A;  5ESC A;  3V4H A;  3R5R A;  3VY2 A;  3ZOD A;  3KYG A;  2Q9K A;  1XXO A;  2GJG A;  2OL5 A;  3DB0 A;  3ZOH A;  3CB0 A;  2D37 A;  2HTD A;  2X1J A;  3AWH A;  1G78 A;  2ASF A;  2ED4 A;  4MTK A;  1USC A;  2D36 A;  2AQ6 A;  2R6V A;  1YOA A;  2OU5 A;  2PTF A;  2FHQ A;  3VYA A;  3PFT A;  3SWJ A;  3FGE A;  4N7R C;  2HHZ A;  3FKH A;  2X1K A;  4ZKY A;  4TV4 A;  3U34 A;  3A20 A;  4HX6 A;  1W3O A;  4L82 A;  3ZOF A;  4HMW A;  2QEA A;  3NFW A;  1G79 A;  3HY8 A;  2I02 A;  3VY5 A;  2IG6 A;  1RZ1 A;  1WGB A;  1RZ0 A;  5BNC A;  2E83 A;  2GUJ A;  4W64 A;  1EJE A;  1VL7 A;  2HTI A;  5CHO A;  4UHV A;  2R0X A;  1RFE A;  1Y30 A;  2P5Z X;  1G77 A;  3BNK A;  3DMB A;  1Y12 A;  4HMX A;  1AXJ A;  3HE1 A;  3U5W A;  4IRA A;  1FLM A;  1WLK A;  1CI0 A;  3E4V A;  3DNH A;  2FG9 A;  4HMU A;  3EC6 A;  3R5Y A;  2IML A; 
#chains in the Genus database with same CATH homology
 3H96 A;  3HMZ A;  2NR4 A;  3U0I A;  3ZOE A;  3K86 A;  1T9M A;  1G76 A;  3IN6 A;  4Y9I A;  2FUR A;  2RE7 A;  4YWN A;  4R82 A;  1I0R A;  1YLN A;  3BPK A;  4HMT A;  4QVB A;  3KYF A;  1USF A;  3R5L A;  3K87 A;  2ECR A;  3RH7 A;  2D5M A;  1W3P A;  2I51 A;  5JAB A;  3BA3 A;  1NRG A;  2HQ9 A;  3R5P A;  3K88 A;  3R5W A;  1JNW A;  3R5Z A;  4HMV A;  3CP3 A;  4YBN A;  3F7E A;  3A6R A;  4F07 A;  1I0S A;  1W3R A;  2VPA A;  2A2J A;  4XHY A;  3ZOC A;  3B5M A;  2ECU A;  2HQ7 A;  3AMF A;  2D38 A;  1WLI A;  1WV4 A;  3U35 A;  2ARZ A;  4Z85 A;  1W9A A;  3TGV A;  1DNL A;  2RDE A;  3GAS A;  3ZOG A;  1TY9 A;  1W3Q A;  1XHN A;  4XJ2 A;  2QCK A;  5CHE C;  3A6Q A;  2IAB A;  4HMS A;  5ESC A;  3R5R A;  3VY2 A;  3ZOD A;  3KYG A;  2Q9K A;  1XXO A;  2GJG A;  2OL5 A;  3DB0 A;  3ZOH A;  3CB0 A;  2D37 A;  2HTD A;  2X1J A;  3AWH A;  1G78 A;  2ASF A;  2ED4 A;  1USC A;  2D36 A;  2AQ6 A;  2R6V A;  1YOA A;  2OU5 A;  2PTF A;  2FHQ A;  3VYA A;  3PFT A;  3SWJ A;  3FGE A;  4N7R C;  2HHZ A;  3FKH A;  2X1K A;  4ZKY A;  3U34 A;  3A20 A;  4HX6 A;  1W3O A;  4L82 A;  3ZOF A;  4HMW A;  2QEA A;  3NFW A;  1G79 A;  3HY8 A;  2I02 A;  3VY5 A;  2IG6 A;  1RZ1 A;  1WGB A;  1RZ0 A;  5BNC A;  2E83 A;  1EJE A;  1VL7 A;  2HTI A;  5CHO A;  2R0X A;  1RFE A;  1Y30 A;  1G77 A;  3BNK A;  3DMB A;  4HMX A;  1AXJ A;  3U5W A;  4IRA A;  1FLM A;  1WLK A;  1CI0 A;  3E4V A;  3DNH A;  2FG9 A;  4HMU A;  3EC6 A;  3R5Y A;  2IML A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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